genome.fa.s21.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  15  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5146026--5146077	27	1.9	27	88	0	77	30	19	32	17	1.95
5146511--5146566	18	3.0	19	78	5	78	37	12	0	50	1.41
5146506--5146568	18	3.4	18	72	12	65	39	11	1	47	1.49
5146563--5146618	18	3.0	18	78	5	67	48	1	12	37	1.52
5147244--5147310	26	2.5	27	95	2	118	49	0	7	43	1.31
5147573--5147601	13	2.2	13	100	0	58	41	0	0	58	0.98
5151007--5151194	45	4.2	45	86	4	229	35	27	16	21	1.94
5155662--5155688	4	6.8	4	100	0	54	48	0	0	51	1.00
5159486--5159525	12	3.2	12	82	6	53	2	15	10	72	1.21
5160731--5160768	15	2.5	15	91	0	67	15	31	34	18	1.92
5162447--5162515	26	2.7	26	88	0	102	23	21	30	24	1.99
5163959--5164036	20	3.9	19	81	3	84	10	24	21	43	1.83
5163980--5164044	20	3.2	20	70	20	55	10	26	20	43	1.84
5163959--5164036	40	2.0	40	94	0	138	10	24	21	43	1.83
5170648--5170695	12	4.0	12	86	0	69	22	16	18	41	1.90
5170650--5170696	24	2.0	24	95	0	85	19	17	19	44	1.87
5170655--5170707	24	2.2	24	86	0	70	24	15	13	47	1.81
5175333--5175433	51	2.0	51	88	3	150	28	20	23	26	1.99
5180641--5180718	41	1.9	41	94	0	138	34	15	6	43	1.72
5186082--5186143	29	2.1	29	96	0	115	32	3	32	32	1.74
5190654--5190711	13	4.5	13	82	0	71	39	5	24	31	1.77
5193099--5193210	40	2.8	39	82	5	136	38	18	11	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5193099--5193227	39	3.3	40	84	2	154	36	18	12	32	1.88
5194214--5194248	14	2.4	14	85	4	52	54	5	0	40	1.24
5201173--5201233	4	15.2	4	96	0	113	24	1	24	49	1.60
5206351--5206552	99	2.0	99	98	0	386	34	18	21	25	1.96
5215687--5215949	40	6.6	39	86	4	278	25	27	21	25	1.99
5215687--5215949	120	2.2	119	82	4	307	25	27	21	25	1.99
5215881--5215958	40	1.9	41	82	10	97	26	28	20	24	1.99
5223636--5223860	40	5.7	40	83	6	242	25	27	21	25	1.99
5223792--5223869	40	1.9	41	82	10	97	26	28	20	24	1.99
5235596--5235755	25	6.4	25	75	7	128	36	23	15	25	1.93
5235608--5235758	50	3.0	51	80	3	164	37	23	15	24	1.93
5237408--5237507	39	2.6	38	83	1	119	49	8	5	38	1.54
5240812--5240944	52	2.6	48	77	12	124	39	7	3	50	1.46
5241342--5241369	14	2.0	14	100	0	56	21	21	7	50	1.72
5243133--5243272	40	3.5	40	78	6	142	32	24	17	26	1.97
5243433--5243479	24	2.0	24	84	16	62	51	17	0	31	1.46
5245562--5245595	14	2.3	15	90	10	61	47	5	0	47	1.26
5245614--5245668	22	2.5	23	70	8	60	43	1	0	54	1.10
5246821--5246875	27	2.2	24	77	20	67	27	29	12	30	1.93
5246829--5246883	27	2.0	27	100	0	110	29	29	12	29	1.93
5255678--5255723	24	2.0	23	87	8	67	26	21	26	26	2.00
5257446--5257499	23	2.5	22	82	11	58	70	1	1	25	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5258192--5258301	42	2.6	42	78	7	116	60	2	0	36	1.18
5258592--5258638	20	2.3	20	80	16	53	17	6	36	40	1.75
5262181--5262233	27	2.0	27	92	0	88	18	28	20	32	1.97
5264776--5265063	143	2.0	145	89	4	449	30	12	6	49	1.67
5265799--5265944	37	4.0	37	93	1	242	24	21	16	36	1.94
5276106--5276151	24	1.9	24	95	0	83	41	10	32	15	1.82
5276305--5276765	230	2.0	230	95	0	823	38	12	20	28	1.88
5278856--5278930	20	3.8	20	72	13	73	10	30	18	40	1.85
5280726--5280767	18	2.4	18	80	11	52	45	33	0	21	1.52
5283509--5283636	63	2.0	63	100	0	256	29	10	21	38	1.87
5285991--5286019	15	1.9	15	100	0	58	27	0	20	51	1.47
5296813--5296842	15	2.0	15	100	0	60	20	26	20	33	1.97
5296828--5297240	220	1.9	220	89	1	648	28	19	22	29	1.98
5297037--5297413	173	2.2	173	92	1	623	28	19	20	30	1.97
5296868--5297344	44	10.9	44	70	13	281	29	20	21	29	1.98
5302016--5302068	25	2.2	24	86	3	70	22	7	16	52	1.69
5306067--5306266	18	11.1	18	77	0	184	40	16	14	29	1.87
5306067--5306262	54	3.6	54	83	0	212	40	15	14	29	1.87
5327601--5327726	30	4.3	29	79	7	130	30	25	23	19	1.98
5327849--5327910	26	2.4	26	81	5	72	40	17	19	22	1.91
5328160--5328244	27	3.2	26	81	8	91	25	15	15	43	1.86
5332176--5332284	30	3.4	30	65	20	85	33	25	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5332148--5332311	67	2.4	67	100	0	328	35	22	20	21	1.96
5334402--5334493	42	2.2	42	92	0	157	32	9	10	46	1.72
5335294--5335407	30	3.9	30	80	8	121	26	22	26	24	2.00
5335802--5335860	26	2.2	27	82	14	70	23	15	16	44	1.86
5336591--5336615	11	2.3	11	100	0	50	72	0	28	0	0.86
5338542--5338840	73	4.1	73	99	0	571	38	6	21	33	1.79
5339617--5339667	27	1.9	26	88	4	75	9	35	1	52	1.46
5349925--5350799	62	14.1	62	99	0	1723	37	20	6	35	1.79
5350773--5350872	50	2.0	50	94	0	173	39	20	9	32	1.83
5352836--5353157	40	8.1	40	84	0	374	21	29	14	34	1.93
5352896--5352955	20	3.0	20	66	9	59	20	26	15	38	1.91
5352836--5353157	120	2.7	120	84	2	441	21	29	14	34	1.93
5356930--5357190	40	6.5	40	82	0	288	22	29	15	33	1.94
5357085--5357147	20	3.2	20	67	0	54	19	34	17	28	1.94
5356963--5357187	120	1.9	120	85	1	317	21	29	15	33	1.94
5359127--5359259	64	2.1	64	97	0	248	54	3	15	27	1.55
5360087--5360376	50	5.7	50	82	3	278	27	22	28	21	1.99
5367656--5367951	49	5.8	50	83	2	236	28	21	26	23	1.99
5374425--5374535	41	2.7	41	80	8	127	30	16	29	23	1.96
5376458--5376487	11	2.7	11	100	0	60	26	0	10	63	1.26
5382816--5382875	25	2.3	26	80	8	68	26	23	20	30	1.98
5393364--5393429	21	3.0	22	86	4	80	30	4	30	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5395270--5395388	63	1.9	63	96	0	220	53	9	22	14	1.69
5399948--5399981	17	2.0	17	94	0	59	20	8	5	64	1.43
5400066--5400097	11	2.9	11	95	0	55	18	6	0	75	1.01
5403884--5403980	30	3.2	30	75	2	106	28	14	26	29	1.95
5404447--5404647	100	2.0	100	100	0	402	36	15	13	33	1.87
5406260--5406302	12	3.6	12	100	0	86	25	16	13	44	1.85
5406363--5406412	6	8.2	6	81	16	50	2	20	2	76	0.99
5406352--5406422	37	1.9	37	86	11	101	2	18	2	76	1.04
5406348--5406408	16	3.8	16	77	14	63	3	19	1	75	1.03
5407407--5407438	11	2.6	13	90	9	50	3	12	3	81	0.93
5407421--5407462	10	3.8	11	84	6	50	7	9	4	78	1.08
5407403--5407462	12	5.2	12	76	17	56	8	11	6	73	1.25
5407431--5407469	11	3.2	13	86	13	57	12	5	7	74	1.20
5408149--5408216	35	1.9	35	96	0	127	45	16	13	25	1.83
5408149--5408235	35	2.5	35	88	3	113	45	16	12	25	1.82
5422547--5422603	29	2.0	29	85	0	78	24	12	31	31	1.92
5424021--5427319	613	5.4	614	91	2	4651	33	15	11	39	1.84
5428524--5428639	25	4.7	25	77	11	96	25	25	20	29	1.99
5429946--5429976	13	2.4	13	94	0	53	3	19	45	32	1.66
5430385--5431952	600	2.6	604	86	5	2191	32	14	13	40	1.84
5432258--5432322	30	2.2	30	94	0	112	60	15	1	23	1.44
5432359--5432398	11	3.6	11	79	0	53	52	10	15	22	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5432360--5432407	22	2.2	22	81	7	53	56	6	18	18	1.62
5432392--5432433	21	2.0	22	85	4	59	69	16	9	4	1.33
5438262--5438289	4	7.0	4	100	0	56	75	0	0	25	0.81
5438743--5438771	10	2.7	11	94	5	51	6	3	6	82	0.93
5440285--5440349	20	3.3	19	73	16	51	38	16	21	23	1.93
5442012--5442186	86	2.0	86	100	0	350	42	14	24	18	1.88
5442273--5442409	21	6.7	21	73	14	51	9	18	2	69	1.29
5442293--5442419	12	10.6	12	71	12	55	10	18	2	68	1.29
5442290--5442410	18	6.4	18	71	9	98	9	19	2	69	1.27
5442290--5442397	6	17.7	6	71	5	74	8	18	2	70	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182