genome.fa.s21.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  170  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51884758--51884783	7	3.7	7	100	0	52	26	0	15	57	1.38
51885358--51885656	97	3.1	96	80	8	322	42	17	2	37	1.64
51885754--51886099	69	5.0	69	98	0	665	27	25	26	20	1.99
51887093--51887168	23	3.2	23	62	17	55	46	9	1	43	1.44
51887084--51887181	49	2.0	49	97	0	187	41	12	2	43	1.53
51888542--51888588	21	2.2	21	84	0	58	19	31	23	25	1.98
51891855--51891886	15	2.1	15	100	0	64	15	6	43	34	1.72
51892467--51892617	41	3.7	41	88	0	212	35	28	19	15	1.93
51897849--51897893	3	15.0	3	80	0	54	60	2	4	33	1.29
51899461--51899557	50	1.9	50	85	0	131	26	22	18	31	1.97
51899813--51900187	132	2.8	132	85	2	495	24	24	21	29	1.99
51904902--51904934	11	3.0	11	100	0	66	63	9	9	18	1.49
51912618--51912662	3	15.0	3	80	0	54	60	2	4	33	1.29
51912761--51912796	16	2.2	16	100	0	72	25	0	36	38	1.56
51912777--51912867	45	2.0	45	85	2	121	27	6	28	37	1.82
51913032--51913068	19	2.0	19	85	15	51	54	0	0	45	1.00
51913012--51913301	120	2.4	120	88	3	438	49	4	2	43	1.35
51925096--51925142	15	3.1	15	81	9	51	51	12	2	34	1.52
51925171--51925202	13	2.5	13	94	0	55	56	15	9	18	1.66
51927506--51927716	84	2.5	83	85	1	260	23	39	15	21	1.92
51928443--51928482	21	2.0	21	85	5	55	50	12	0	37	1.41
51934204--51934273	31	2.3	31	83	11	90	41	1	5	51	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51934360--51934405	18	2.5	19	86	6	60	43	0	4	52	1.21
51934546--51934583	20	1.9	20	84	10	51	55	0	5	39	1.23
51934831--51934888	29	2.0	29	80	12	66	31	1	25	41	1.66
51941420--51941502	42	1.9	43	82	4	105	49	13	2	34	1.55
51943939--51943978	18	2.2	19	90	4	64	50	0	5	45	1.23
51961479--51961526	19	2.5	20	86	6	64	50	4	8	37	1.52
51961489--51961527	20	2.0	20	95	5	71	51	2	5	41	1.38
51961548--51961583	8	4.5	8	100	0	72	38	0	0	61	0.96
51968768--51968884	57	2.1	57	98	0	225	36	7	21	34	1.82
51972039--51972080	18	2.3	18	95	0	75	38	4	4	52	1.44
51975455--51975785	171	1.9	170	93	0	563	38	12	21	27	1.89
51980222--51980250	13	2.3	13	94	5	51	82	3	6	6	0.93
51980596--51980636	16	2.5	17	76	11	50	31	2	0	65	1.05
51982070--51982099	4	7.8	4	92	7	53	80	0	20	0	0.72
51982068--51982099	11	2.8	11	95	4	55	81	0	18	0	0.70
51982789--51982838	15	3.2	15	76	20	57	36	0	14	50	1.43
51984678--51984785	42	2.6	42	89	2	155	27	20	19	32	1.97
51996561--51996802	51	4.8	51	82	6	260	29	15	25	29	1.96
51996566--51996802	102	2.3	101	85	5	300	29	15	25	29	1.96
52004083--52004125	20	2.2	20	91	0	68	20	27	41	9	1.83
52004095--52004136	20	2.1	20	86	0	57	21	21	45	11	1.84
52015610--52015649	21	1.9	21	84	0	53	20	17	32	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52018906--52018961	29	2.0	28	86	10	78	42	0	21	35	1.53
52019475--52019567	30	3.0	31	68	22	79	32	5	18	44	1.72
52019388--52019558	92	1.9	91	88	1	261	32	7	18	42	1.77
52019590--52019721	61	2.1	63	79	8	146	28	9	17	43	1.81
52030778--52030814	2	18.5	2	100	0	74	0	51	0	48	1.00
52034014--52034087	37	2.0	37	91	2	114	29	20	9	39	1.84
52035546--52035595	14	3.5	14	81	5	64	48	10	0	42	1.37
52036724--52037145	211	2.0	211	99	0	835	32	20	15	31	1.94
52039089--52039140	28	1.9	27	92	7	88	23	15	15	46	1.83
52039304--52039330	9	3.0	9	100	0	54	33	11	0	55	1.35
52039384--52039430	26	2.0	24	84	16	62	38	19	6	36	1.77
52062793--52062849	30	1.9	30	85	0	78	19	26	26	28	1.99
52064660--52064725	6	10.5	6	80	9	60	77	6	4	12	1.10
52070114--52070150	6	6.0	6	96	3	65	81	0	0	18	0.70
52079360--52079412	26	2.0	26	96	0	97	18	16	11	52	1.73
52079367--52079412	14	3.4	14	73	11	51	19	15	10	54	1.70
52090933--52090990	26	2.2	25	85	11	73	53	8	20	17	1.70
52091686--52091712	3	9.0	3	100	0	54	33	0	66	0	0.92
52094331--52094364	12	2.7	13	86	9	52	32	0	0	67	0.91
52096992--52097044	24	2.1	24	86	10	70	66	0	5	28	1.15
52096991--52097053	22	2.8	22	81	15	67	65	0	6	28	1.17
52097030--52097102	8	9.4	8	76	16	55	76	0	15	8	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52097046--52097107	4	16.0	4	79	15	60	79	0	17	3	0.87
52097051--52097107	23	2.5	22	88	5	78	80	0	17	1	0.79
52097051--52097107	14	4.2	14	84	4	73	80	0	17	1	0.79
52097051--52097110	19	3.2	19	88	4	95	80	0	18	1	0.80
52097783--52097829	24	2.0	24	84	16	62	31	0	17	51	1.46
52097985--52098117	37	3.4	38	72	12	110	25	16	24	33	1.96
52097968--52098088	37	3.1	37	73	12	102	24	17	23	34	1.96
52100933--52100987	18	3.1	18	94	0	101	30	16	5	47	1.69
52103161--52103194	5	6.6	5	96	3	59	17	0	0	82	0.67
52108513--52108547	18	1.9	18	88	0	52	60	0	5	34	1.21
52108616--52108680	21	3.2	20	74	12	62	58	1	12	27	1.43
52108623--52108676	18	3.0	18	78	5	56	57	1	12	27	1.46
52113076--52113110	18	1.9	18	88	0	52	60	0	5	34	1.21
52113179--52113243	21	3.2	20	74	12	62	58	1	12	27	1.43
52113186--52113239	18	3.0	18	78	5	56	57	1	12	27	1.46
52114004--52114036	10	3.0	11	86	13	50	72	3	6	18	1.18
52114504--52114529	5	5.2	5	100	0	52	42	19	19	19	1.90
52115556--52115592	9	4.1	9	92	0	65	29	10	13	45	1.77
52121352--52121502	75	2.0	75	98	0	293	41	13	7	38	1.72
52126700--52126740	15	2.7	15	88	3	55	24	7	34	34	1.83
52134522--52134573	19	2.5	20	81	12	61	57	3	3	34	1.35
52134530--52134569	19	2.0	20	90	4	64	55	5	5	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52145709--52145746	20	1.9	20	89	10	60	34	0	5	60	1.19
52154383--52154431	20	2.5	19	83	3	53	28	2	6	63	1.30
52154505--52154619	23	4.9	22	66	20	63	35	5	4	54	1.43
52158585--52158638	25	2.2	25	86	6	74	22	14	5	57	1.58
52159400--52159468	27	2.5	26	82	17	79	79	4	2	13	0.99
52161715--52161970	44	5.8	44	85	1	318	29	17	26	27	1.97
52162753--52162787	13	2.6	13	90	4	52	74	0	0	25	0.82
52164559--52164589	16	1.9	16	93	0	53	0	9	3	87	0.66
52165599--52165659	9	6.8	9	74	12	54	75	0	4	19	0.98
52165606--52165666	5	11.0	5	74	19	50	77	0	3	19	0.91
52165600--52165667	24	2.7	24	73	17	66	76	0	4	19	0.95
52165607--52165668	17	3.6	16	77	12	61	77	0	3	19	0.90
52165607--52165668	12	5.5	11	77	11	63	77	0	3	19	0.90
52172248--52172296	20	2.5	19	83	3	53	28	2	6	63	1.30
52172374--52172488	23	4.9	22	67	20	72	35	4	4	55	1.39
52178924--52179193	147	1.8	147	88	3	409	19	38	10	31	1.85
52183559--52183591	17	2.0	17	94	5	59	21	6	24	48	1.72
52184235--52184275	21	2.0	21	90	0	64	29	21	31	17	1.96
52193903--52193940	6	6.5	6	84	3	51	15	0	5	78	0.91
52193903--52193940	18	2.2	17	90	4	58	15	0	5	78	0.91
52201516--52201546	14	2.2	14	94	0	53	38	0	12	48	1.42
52202368--52202422	12	4.7	12	77	16	53	69	0	5	25	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52203330--52203723	194	2.0	196	91	1	641	27	8	17	45	1.78
52208595--52208637	22	2.0	21	91	8	70	23	18	13	44	1.86
52216393--52216426	14	2.4	14	90	9	52	20	0	38	41	1.53
52216347--52216446	22	4.5	22	72	12	60	19	1	35	45	1.57
52216409--52216475	29	2.3	29	87	5	91	26	0	20	52	1.47
52216416--52216461	22	2.1	22	88	8	67	28	0	17	54	1.43
52216694--52216735	21	1.9	21	85	9	57	61	4	9	23	1.45
52216637--52216903	134	2.0	134	98	0	516	43	4	15	36	1.67
52216828--52216869	21	1.9	21	85	9	57	61	4	9	23	1.45
52217077--52217388	112	2.7	113	80	5	335	26	15	18	39	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182