genome.fa.s21.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  160  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49237213--49237289	25	3.3	25	67	20	76	19	2	32	45	1.64
49237180--49237313	44	3.0	44	96	2	243	21	2	32	43	1.65
49237297--49237321	13	1.9	13	100	0	50	16	0	44	40	1.47
49238894--49238964	25	2.8	25	86	0	106	29	22	21	26	1.99
49246531--49246594	25	2.5	25	84	5	74	26	25	23	25	2.00
49256485--49256635	75	2.0	75	94	0	266	37	11	19	30	1.88
49258669--49258704	18	2.0	18	100	0	72	38	16	5	38	1.72
49259465--49259526	31	2.0	31	90	0	97	33	3	24	38	1.71
49261457--49261559	44	2.3	44	96	0	188	31	15	24	29	1.96
49261510--49261636	57	2.2	58	95	1	229	33	12	25	28	1.92
49261600--49261659	7	8.6	7	90	0	93	41	3	26	28	1.71
49264265--49264303	5	7.6	5	83	16	53	38	2	0	58	1.12
49264263--49264304	21	1.9	23	90	9	70	40	2	0	57	1.12
49270508--49270562	11	4.8	11	80	8	65	85	10	3	0	0.72
49270512--49270550	8	4.9	8	81	12	53	87	12	0	0	0.55
49270508--49270550	9	4.9	9	78	16	54	86	13	0	0	0.58
49270508--49270550	18	2.5	17	85	14	61	86	13	0	0	0.58
49270509--49270562	16	3.3	16	78	2	63	87	9	3	0	0.67
49271054--49271100	15	3.1	15	82	8	60	72	0	14	12	1.13
49272459--49272931	50	9.5	50	69	1	293	29	23	24	22	1.99
49272459--49272965	100	5.1	99	86	1	638	29	23	24	23	1.99
49272453--49272934	199	2.4	199	86	2	635	29	23	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49272459--49273014	299	1.9	299	83	2	731	29	23	24	23	1.99
49273025--49273226	44	4.7	43	72	10	160	29	20	22	27	1.99
49276459--49276540	40	2.0	40	100	0	164	43	4	28	23	1.74
49286490--49286552	20	3.2	20	84	8	76	36	1	4	57	1.30
49286496--49286562	20	3.4	20	82	12	68	37	1	4	56	1.29
49289199--49289225	6	4.5	6	100	0	54	14	33	0	51	1.43
49289932--49289970	3	13.0	3	83	0	51	35	5	0	58	1.20
49289943--49289971	15	1.9	15	100	0	58	41	0	0	58	0.98
49292135--49292185	22	2.3	22	86	6	68	80	5	7	5	1.02
49292641--49292788	77	1.9	77	88	0	224	28	14	10	46	1.77
49297445--49297506	32	2.0	32	84	12	85	53	1	6	38	1.37
49297444--49297509	35	1.9	34	87	3	96	56	1	6	36	1.34
49300501--49300614	41	2.8	41	84	1	156	25	26	21	27	1.99
49300840--49300895	26	2.2	25	81	12	60	44	14	1	39	1.55
49307237--49307334	44	2.2	45	85	1	126	27	24	14	33	1.94
49307855--49308048	44	4.4	43	67	6	129	25	25	18	30	1.98
49307311--49310513	132	24.3	132	89	1	4472	28	23	18	29	1.98
49311785--49311823	20	2.0	19	90	5	60	10	25	0	64	1.25
49311806--49311841	16	2.2	17	90	9	58	13	19	0	66	1.24
49315575--49315929	176	2.0	175	97	0	665	36	20	15	27	1.93
49317139--49317199	32	1.9	32	90	9	99	49	11	4	34	1.61
49323417--49323545	43	3.0	43	80	2	152	32	27	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49324790--49324832	21	2.0	21	90	0	68	51	16	6	25	1.69
49324743--49324877	68	2.0	68	92	0	225	51	14	8	26	1.70
49324811--49324903	47	2.0	47	86	0	132	52	12	8	25	1.68
49324870--49324933	30	2.1	30	88	0	92	51	12	9	26	1.70
49324828--49324979	77	2.0	77	86	2	216	52	13	10	23	1.71
49324914--49325005	49	1.9	48	86	4	132	54	10	9	25	1.65
49324984--49325026	21	2.0	21	86	0	59	51	13	6	27	1.67
49325005--49325135	47	2.8	47	81	2	156	50	9	12	26	1.72
49324743--49325097	194	1.8	192	87	1	530	52	11	10	25	1.69
49328526--49328657	51	2.6	51	83	3	160	24	18	28	29	1.98
49328654--49328748	45	2.1	45	88	0	145	27	20	23	29	1.98
49330248--49330304	21	2.8	20	76	20	55	38	1	15	43	1.57
49335800--49335843	21	2.2	20	91	4	70	20	27	9	43	1.82
49339523--49339577	21	2.6	21	88	0	83	23	9	38	29	1.85
49339689--49339744	18	3.1	18	72	23	55	55	3	1	39	1.28
49351582--49351610	15	1.9	15	100	0	58	27	0	6	65	1.18
49364072--49364109	6	6.3	6	96	0	67	21	34	15	28	1.94
49370066--49370137	30	2.3	32	77	20	82	44	16	9	29	1.80
49370894--49370932	15	2.7	14	80	7	51	35	2	12	48	1.55
49392874--49393054	69	2.6	69	95	0	326	33	18	10	37	1.85
49402851--49402906	22	2.6	21	78	10	60	41	0	1	57	1.09
49416359--49416423	30	2.1	31	94	2	114	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49421003--49421095	47	2.0	47	97	0	177	15	27	34	22	1.94
49424265--49424343	41	1.9	39	87	12	115	16	26	17	39	1.91
49424576--49424678	51	2.0	51	96	0	188	39	13	27	19	1.89
49424998--49425125	64	2.0	64	95	0	229	21	26	28	23	1.99
49429191--49429487	26	11.8	25	70	11	153	30	6	4	58	1.44
49429277--49429434	48	3.2	49	76	10	169	29	5	6	58	1.44
49431434--49431478	5	9.4	5	77	18	51	22	20	13	44	1.85
49431434--49431487	9	5.8	9	80	20	58	24	18	12	44	1.85
49431434--49431487	19	2.9	18	77	22	58	24	18	12	44	1.85
49431440--49431480	19	2.1	19	90	9	64	24	19	12	43	1.85
49434182--49434231	6	8.0	6	84	8	64	86	0	12	2	0.67
49434174--49434231	18	3.0	19	85	7	73	84	0	10	5	0.77
49434173--49434224	26	1.9	27	92	7	88	84	0	7	7	0.77
49442783--49442885	52	2.0	52	94	0	179	28	3	34	33	1.75
49443358--49443548	36	5.0	36	81	12	238	36	13	20	29	1.90
49443322--49443512	82	2.3	82	93	0	319	36	12	21	29	1.90
49443890--49443959	35	2.0	35	97	0	131	28	11	21	38	1.88
49445572--49446768	143	8.4	143	84	1	1459	30	19	21	28	1.97
49447329--49447372	18	2.5	18	81	3	54	75	4	9	11	1.19
49447426--49447464	19	2.0	21	85	10	55	10	12	2	74	1.17
49447674--49447779	27	3.9	27	80	10	119	29	8	0	61	1.32
49447674--49447797	25	4.8	25	76	16	85	29	8	1	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49447674--49448003	26	13.0	25	71	13	169	29	6	4	60	1.40
49447939--49448003	27	2.4	28	87	7	91	29	3	1	66	1.16
49447947--49448014	27	2.8	23	75	25	68	29	4	0	66	1.11
49447948--49448087	50	2.8	47	75	15	122	30	7	2	60	1.38
49450164--49450438	147	1.9	147	89	0	424	29	10	40	20	1.85
49450856--49450897	20	2.1	20	95	0	75	42	9	21	26	1.83
49450593--49451310	396	1.8	396	99	0	1427	35	13	15	35	1.87
49451252--49451293	20	2.1	20	95	0	75	42	9	21	26	1.83
49457693--49457794	43	2.4	43	76	12	102	28	28	20	22	1.99
49468721--49468784	28	2.3	26	80	15	67	37	3	6	53	1.42
49474566--49474639	37	2.0	36	86	2	103	28	28	10	31	1.90
49481294--49481353	12	4.9	12	74	22	54	46	1	1	50	1.21
49484896--49485170	147	1.9	147	88	0	415	28	10	41	18	1.84
49495526--49495596	22	3.1	23	75	6	72	35	16	16	30	1.92
49497472--49497518	22	2.1	23	84	4	60	36	4	8	51	1.52
49497677--49497800	65	2.0	64	84	7	166	43	17	8	30	1.78
49498104--49498135	15	2.2	15	94	5	57	31	0	6	62	1.20
49500180--49500309	63	2.1	63	83	2	163	28	20	27	23	1.99
49503115--49503157	23	1.9	23	86	13	63	27	4	18	48	1.68
49504978--49505004	14	1.9	14	100	0	54	51	7	0	40	1.30
49505322--49505366	21	2.1	22	87	4	65	42	15	13	28	1.85
49505322--49506556	140	8.8	140	98	0	2339	40	14	12	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49506810--49506844	15	2.3	15	90	9	54	51	22	0	25	1.48
49507502--49507619	43	2.7	43	79	8	123	32	29	18	19	1.96
49512024--49512058	15	2.3	15	100	0	70	22	48	22	5	1.72
49512019--49512058	15	2.7	14	92	3	53	20	45	25	10	1.81
49512287--49512339	19	3.0	17	78	10	61	35	7	18	37	1.80
49512311--49512355	23	2.0	23	91	4	74	37	4	17	40	1.70
49512321--49512365	23	2.0	23	86	4	65	33	4	15	46	1.66
49512543--49512581	19	2.0	21	85	10	55	15	10	5	69	1.34
49550312--49550390	31	2.5	31	89	0	122	13	36	27	21	1.92
49560203--49560723	223	2.3	223	86	4	728	28	22	18	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182