genome.fa.s21.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  103  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30997701--30997828	53	2.5	53	72	12	120	57	2	2	37	1.24
30998968--30999007	17	2.5	15	81	14	53	5	17	35	42	1.71
31002084--31002127	22	1.9	24	86	9	65	43	2	13	40	1.57
31002227--31002268	20	2.1	20	90	0	66	50	4	7	38	1.51
31004252--31004296	23	2.0	23	82	4	56	28	11	11	48	1.73
31010107--31010147	19	2.2	19	91	4	66	48	0	2	48	1.14
31014921--31014961	19	2.2	19	91	4	66	48	0	2	48	1.14
31022471--31022507	15	2.5	15	84	16	51	37	8	2	51	1.46
31027198--31027321	50	2.5	50	80	2	142	19	29	25	25	1.99
31033116--31033140	13	1.9	13	100	0	50	40	28	0	32	1.57
31034956--31035008	21	2.5	21	93	0	88	33	9	13	43	1.76
31044885--31044948	13	4.9	13	81	7	85	29	7	26	35	1.85
31055468--31055508	15	2.4	18	80	11	52	65	7	7	19	1.41
31058033--31058062	14	2.1	14	93	0	51	40	0	43	16	1.48
31060866--31060932	29	2.3	28	75	14	66	74	1	1	22	0.98
31061313--31061421	54	2.0	54	96	0	200	32	18	12	36	1.89
31063213--31063259	12	4.0	12	84	13	62	25	0	4	70	1.05
31063215--31063258	23	1.9	23	90	9	72	25	0	2	72	0.96
31063846--31063976	40	3.3	39	73	11	113	37	22	23	16	1.94
31064022--31064341	41	7.8	41	77	5	263	15	25	23	35	1.95
31064022--31064341	82	3.9	82	83	2	358	15	25	23	35	1.95
31064812--31064849	15	2.5	15	86	0	58	21	0	42	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31064785--31064852	15	4.9	14	74	13	52	23	0	35	41	1.55
31075837--31076328	42	11.8	42	87	0	585	21	19	21	36	1.95
31076224--31076347	39	3.1	38	81	8	131	22	16	24	37	1.94
31077273--31077518	52	4.8	49	67	17	133	40	4	11	43	1.61
31077100--31077533	154	2.8	155	88	6	600	41	5	10	43	1.61
31078055--31078101	24	1.9	24	83	12	60	31	6	6	55	1.51
31078107--31078154	21	2.3	21	88	0	69	29	8	0	62	1.24
31078117--31078158	21	2.0	21	100	0	84	28	4	0	66	1.12
31094767--31094811	23	2.0	23	95	0	81	42	8	22	26	1.83
31101335--31101391	30	1.9	30	82	7	71	19	42	1	36	1.62
31101744--31101823	38	2.2	37	82	8	92	41	8	1	48	1.42
31101784--31101817	17	1.9	18	94	5	61	41	2	0	55	1.15
31102367--31102495	43	3.0	42	90	2	204	29	34	17	19	1.94
31111736--31112083	41	8.5	41	83	1	403	19	24	27	28	1.99
31112526--31112634	7	15.1	7	77	5	65	22	0	44	33	1.53
31112526--31112632	22	5.0	21	66	14	56	22	0	42	34	1.54
31112576--31112619	22	2.0	22	86	8	63	18	0	47	34	1.49
31112581--31112639	29	2.0	30	86	3	84	23	0	44	32	1.54
31113309--31113364	16	3.5	16	76	7	60	64	3	7	25	1.35
31113680--31113725	24	2.0	24	86	4	67	26	43	2	28	1.66
31115126--31115167	22	1.9	22	95	0	75	47	14	0	38	1.44
31115411--31115461	25	2.1	24	89	10	77	33	0	3	62	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31115465--31115633	25	6.8	25	88	2	216	47	17	0	34	1.47
31115469--31115638	9	20.2	9	75	14	150	46	17	0	35	1.53
31115469--31115638	16	10.1	17	76	13	133	46	17	0	35	1.53
31121163--31121199	19	1.9	19	94	0	65	27	10	2	59	1.44
31121450--31121601	43	3.6	41	81	8	162	24	19	30	25	1.98
31123904--31124171	142	1.9	142	99	0	527	35	5	8	49	1.59
31126690--31126740	21	2.4	22	80	3	59	72	0	25	1	0.95
31130695--31130744	18	2.8	17	80	19	57	28	4	2	66	1.21
31130759--31130795	19	2.0	19	94	5	67	35	0	5	59	1.20
31130759--31130812	19	2.9	18	86	8	65	40	0	3	55	1.17
31130733--31130812	19	4.6	18	74	14	60	43	0	2	53	1.14
31130889--31130927	18	2.2	18	90	0	60	30	7	7	53	1.57
31133853--31134252	40	10.0	40	83	3	448	29	23	15	32	1.95
31152327--31152504	27	6.6	27	83	3	205	26	15	28	29	1.96
31152328--31152483	82	1.9	81	88	3	233	26	15	28	29	1.96
31152324--31152504	82	2.2	81	83	2	229	27	15	27	29	1.96
31156028--31156098	27	2.6	27	82	8	74	11	19	38	30	1.87
31156087--31156139	25	2.1	25	100	0	106	15	15	39	30	1.87
31156235--31156277	19	2.3	18	80	11	52	27	18	25	27	1.98
31157026--31157069	18	2.4	18	81	7	54	22	29	15	31	1.95
31157217--31157444	68	3.4	68	85	3	289	23	12	21	42	1.87
31158105--31158248	54	2.7	54	82	2	155	20	25	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31159128--31159233	37	2.9	37	85	0	131	40	29	11	18	1.86
31159857--31159912	23	2.5	23	74	11	62	60	19	0	19	1.36
31166813--31166870	28	2.1	28	100	0	116	17	10	29	43	1.82
31169127--31169201	36	2.1	36	92	0	123	25	17	12	45	1.82
31170009--31170052	6	7.2	6	89	5	70	50	13	15	20	1.78
31170032--31170131	45	2.2	45	81	0	119	40	16	19	25	1.91
31171343--31171399	30	1.9	29	86	10	80	49	5	0	45	1.24
31171492--31171535	16	2.6	16	79	10	52	47	4	0	47	1.22
31190389--31190506	50	2.3	50	85	5	148	33	16	13	36	1.88
31191892--31191929	11	3.5	11	85	0	58	68	2	7	21	1.28
31192834--31192872	18	2.2	18	85	0	51	71	2	20	5	1.17
31192917--31192958	18	2.4	18	76	4	50	69	4	16	9	1.33
31195213--31195255	22	2.0	21	90	4	68	65	2	6	25	1.30
31196244--31196283	20	2.0	20	90	0	62	12	27	17	42	1.85
31200564--31200682	62	1.9	62	89	3	186	26	31	20	22	1.98
31203122--31203203	25	3.3	25	87	0	128	39	37	8	14	1.77
31218563--31218649	29	3.0	29	81	1	93	42	21	13	21	1.88
31225001--31225028	8	3.5	8	100	0	56	25	0	0	75	0.81
31225092--31225141	17	3.0	17	91	5	84	24	16	8	52	1.70
31225095--31225144	16	3.1	16	94	2	82	24	14	10	52	1.71
31227571--31227755	101	1.8	101	91	5	311	22	18	28	30	1.97
31227677--31227757	26	3.2	26	62	28	64	23	14	29	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31227566--31227763	51	3.9	50	80	3	222	22	18	29	29	1.97
31232145--31232214	27	2.6	27	86	2	86	30	27	14	28	1.95
31235124--31235188	27	2.4	27	78	0	76	26	24	10	38	1.88
31235272--31235325	27	2.0	27	85	10	74	35	22	9	33	1.86
31235281--31235370	27	3.3	27	76	1	90	33	22	10	34	1.87
31237607--31237771	66	2.5	66	77	2	188	32	16	23	28	1.96
31242221--31242749	263	2.0	263	100	0	1058	24	8	41	25	1.83
31245225--31245265	15	2.8	15	75	17	50	31	2	0	65	1.05
31258480--31258520	18	2.2	19	91	4	66	39	0	0	60	0.96
31258477--31258535	19	3.0	20	80	14	68	40	3	1	54	1.27
31260004--31260134	57	2.3	58	84	9	178	51	6	15	27	1.67
31260105--31260184	7	11.4	7	100	0	160	72	0	13	13	1.12
31265554--31265953	44	9.1	44	89	2	581	29	24	19	26	1.98
31268175--31268210	6	5.7	6	93	6	54	0	13	0	86	0.58
31268175--31268210	7	5.4	7	96	3	58	0	13	0	86	0.58
31268175--31268210	13	2.8	12	88	12	54	0	13	0	86	0.58
31268222--31268270	20	2.6	18	79	20	55	10	6	12	71	1.30
31272741--31272791	9	5.7	9	77	9	50	58	3	7	29	1.44
31272728--31272809	27	2.8	29	76	14	80	54	7	8	29	1.57
31272752--31272803	12	4.1	12	74	13	50	57	0	9	32	1.31
31289327--31289384	28	2.1	28	100	0	116	36	13	29	20	1.91
31291474--31291547	27	2.7	27	91	0	121	40	24	14	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31291510--31291584	37	2.0	37	94	0	132	40	30	12	17	1.86
31291547--31291781	27	8.8	27	82	3	278	43	20	16	19	1.88
31291487--31291611	64	2.0	63	88	1	187	40	24	13	20	1.89
31291547--31291781	53	4.4	53	82	7	255	43	20	16	19	1.88
31291547--31291780	80	2.9	80	85	3	292	44	20	16	19	1.87
31293109--31293430	27	12.0	27	80	4	321	21	19	19	39	1.92
31294127--31294186	29	2.0	31	87	6	88	48	11	30	10	1.72
31302247--31302300	28	1.9	28	92	0	90	27	22	22	27	1.99
31302413--31302482	26	2.7	26	95	0	131	38	22	22	15	1.92
31302664--31302947	27	10.5	27	81	4	154	22	19	18	40	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182