genome.fa.s21.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  106  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32038756--32038787	7	4.6	7	100	0	64	25	0	12	62	1.30
32039275--32039316	21	2.0	21	86	9	59	30	16	19	33	1.94
32040734--32040811	15	5.2	15	68	11	61	43	7	21	26	1.80
32040728--32040821	30	3.1	30	93	1	152	42	6	24	26	1.78
32047416--32047454	21	2.0	20	85	10	53	35	25	20	17	1.95
32048975--32049028	24	2.2	25	77	9	58	44	12	12	29	1.80
32063931--32063992	25	2.5	25	97	0	115	0	20	25	53	1.46
32065022--32065075	15	3.5	16	78	12	60	42	5	9	42	1.60
32066038--32066267	43	5.4	43	78	3	205	25	16	19	39	1.91
32066027--32066267	86	2.8	86	79	1	252	25	15	18	39	1.91
32068657--32068786	69	1.9	69	83	0	170	26	22	16	34	1.95
32069437--32069747	156	2.0	155	96	1	579	38	17	15	28	1.90
32071597--32071663	29	2.4	28	78	9	73	26	14	14	43	1.85
32071939--32072292	125	2.8	126	89	2	561	28	14	22	34	1.94
32074423--32074447	7	3.6	7	100	0	50	60	12	0	28	1.32
32074779--32075946	587	2.0	586	97	0	2192	24	28	21	25	1.99
32075992--32076022	15	2.0	16	93	6	55	67	6	0	25	1.14
32076115--32076178	30	2.1	31	94	2	112	67	0	0	32	0.91
32076767--32076818	19	2.7	20	79	11	63	30	0	3	65	1.10
32078370--32078433	31	2.1	31	81	0	74	23	21	17	37	1.94
32078842--32078882	20	2.0	20	85	4	55	29	9	12	48	1.72
32078827--32078894	35	1.9	35	88	5	102	33	8	11	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32079887--32079916	4	7.5	4	92	0	51	26	3	23	46	1.68
32082117--32082167	18	2.8	18	75	0	66	39	3	43	13	1.63
32084603--32084647	15	3.0	15	80	0	54	40	2	8	48	1.47
32085145--32085215	23	3.0	24	73	8	74	36	14	18	30	1.90
32085212--32085253	22	1.9	22	85	0	57	38	7	19	35	1.79
32085319--32085531	36	5.7	35	73	10	158	42	13	19	24	1.87
32085292--32085864	75	7.7	75	81	2	535	40	13	20	25	1.90
32085292--32085566	39	7.3	39	71	11	178	41	13	19	25	1.88
32085701--32085825	36	3.4	34	73	10	97	40	14	20	25	1.90
32085888--32085955	27	2.5	27	95	0	118	41	16	17	25	1.89
32085936--32086185	36	6.7	38	70	6	143	41	13	18	26	1.88
32085974--32086185	39	5.6	39	70	8	150	41	13	18	26	1.88
32085963--32086181	75	2.9	75	82	0	276	41	12	18	26	1.87
32100233--32100286	26	2.1	26	92	0	90	59	7	9	24	1.54
32101398--32101425	5	5.6	5	100	0	56	21	0	0	78	0.75
32101397--32101436	15	2.7	15	84	0	53	25	5	0	70	1.08
32105137--32105188	23	2.3	23	86	0	68	25	25	17	32	1.97
32116577--32116792	6	36.0	6	76	5	150	60	0	6	31	1.30
32116572--32116790	21	10.0	21	72	11	91	60	0	6	31	1.29
32117354--32117400	18	2.6	18	86	0	58	42	42	2	12	1.55
32117491--32117575	9	9.4	9	86	0	125	23	11	23	41	1.87
32117486--32117575	36	2.5	36	92	1	144	23	12	23	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32118100--32118137	17	2.2	17	90	0	58	76	0	21	2	0.91
32118979--32119004	8	3.2	8	100	0	52	0	11	0	88	0.52
32125276--32125372	48	2.0	50	82	8	119	43	11	14	30	1.81
32131675--32131715	7	5.9	7	100	0	82	73	0	0	26	0.84
32132840--32132905	23	2.9	23	75	8	71	33	15	13	37	1.86
32141059--32141093	14	2.5	14	95	0	61	51	0	0	48	1.00
32142330--32142390	32	1.9	32	96	0	113	50	18	3	27	1.62
32142330--32142403	32	2.5	30	87	10	100	51	18	2	27	1.60
32142331--32142417	27	3.0	27	83	11	77	51	18	3	26	1.62
32142606--32142634	12	2.5	12	94	5	51	0	34	0	65	0.93
32148987--32149035	21	2.3	21	89	0	80	24	6	24	44	1.76
32175252--32175321	14	5.0	14	80	16	83	70	1	28	0	0.96
32175255--32175321	7	9.6	7	71	28	54	70	1	28	0	0.96
32175256--32175321	28	2.4	28	92	5	107	69	1	28	0	0.97
32177492--32177536	23	2.0	23	87	8	67	33	17	8	40	1.81
32180809--32180955	35	4.2	35	75	5	127	31	19	22	26	1.97
32180828--32180960	70	1.9	70	84	0	176	32	16	21	29	1.95
32180867--32180969	35	3.0	34	81	5	118	31	16	23	29	1.96
32183352--32183386	12	2.9	12	82	0	52	74	11	8	5	1.22
32184854--32184923	27	2.6	28	75	4	72	24	30	17	28	1.97
32192205--32192238	12	2.7	13	86	9	52	47	0	5	47	1.26
32200392--32200588	102	1.9	102	97	0	376	32	10	12	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32201343--32201374	15	2.1	15	94	0	55	84	0	0	15	0.63
32201343--32201377	8	4.5	8	89	7	54	82	0	0	17	0.66
32205373--32205522	43	3.5	42	66	17	110	39	11	22	27	1.88
32205379--32205549	87	2.0	87	96	0	315	39	9	21	28	1.85
32213840--32213882	21	2.1	21	87	8	63	23	11	0	65	1.25
32214563--32214613	17	2.8	18	82	17	61	37	0	0	62	0.95
32214579--32214662	38	2.3	38	84	10	104	34	1	0	64	1.02
32214579--32214641	21	3.0	21	80	2	63	34	0	0	65	0.93
32214595--32214657	8	8.2	8	75	15	53	34	1	0	63	1.04
32215817--32215851	18	2.1	18	89	10	56	11	11	0	77	1.00
32224940--32224994	19	2.9	18	78	13	58	60	0	1	38	1.08
32230672--32230754	33	2.5	34	78	9	91	28	10	15	44	1.80
32230820--32230937	45	2.6	45	83	4	148	26	22	16	35	1.94
32239483--32239605	45	3.0	39	81	14	158	50	29	3	17	1.61
32239500--32239600	45	2.3	44	91	1	166	54	25	2	16	1.56
32239734--32239808	37	2.0	37	94	0	114	38	2	13	45	1.57
32239807--32239837	9	3.4	9	95	0	53	25	9	25	38	1.86
32241005--32241057	21	2.5	21	75	6	54	32	0	3	64	1.12
32242412--32242463	26	2.0	26	81	11	61	65	3	21	9	1.38
32244030--32244068	18	2.2	18	90	0	60	20	15	15	48	1.81
32249323--32249425	43	2.4	43	93	4	172	35	16	5	41	1.72
32259271--32259330	22	2.8	22	84	2	77	13	38	21	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32260845--32260889	23	1.9	24	86	4	65	77	2	15	4	1.02
32260833--32260892	18	3.4	18	76	2	68	81	1	13	3	0.89
32261603--32261645	22	2.0	22	85	0	59	23	16	9	51	1.73
32272656--32272904	85	2.9	85	87	0	336	33	14	18	32	1.91
32273181--32273234	26	2.1	26	100	0	108	27	14	7	50	1.70
32276766--32276810	23	2.0	23	86	0	63	35	6	0	57	1.25
32298723--32298768	23	2.0	23	95	0	83	41	17	19	21	1.90
32307977--32308091	42	2.7	42	97	1	212	41	22	11	24	1.86
32342422--32342489	32	2.1	32	89	5	102	26	26	10	36	1.88
32343623--32343882	135	1.9	135	84	1	351	31	20	12	36	1.89
32354726--32354765	19	2.2	18	90	4	62	40	15	2	42	1.60
32365882--32365942	27	2.3	27	97	0	113	40	13	4	40	1.65
32369939--32370137	66	3.0	66	85	2	258	12	24	13	49	1.76
32370897--32370976	5	16.0	5	97	0	151	40	20	1	38	1.60
32376657--32376724	31	2.2	31	78	0	73	32	11	11	44	1.77
32385301--32385448	73	2.0	73	92	2	244	30	18	7	43	1.78
32385528--32385556	14	2.0	15	93	6	51	75	0	20	3	0.94
32389187--32389523	63	5.2	63	64	11	187	39	11	16	32	1.85
32388919--32389652	390	1.9	390	85	2	1010	38	12	16	32	1.86
32388900--32389657	130	5.8	130	85	2	907	39	12	16	31	1.86
32391312--32391340	14	2.0	15	93	6	51	75	0	20	3	0.94
32394971--32395307	63	5.2	63	64	11	187	39	11	16	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32394703--32395436	390	1.9	390	85	2	1010	38	12	16	32	1.86
32394684--32395441	130	5.8	130	85	2	907	39	12	16	31	1.86
32402518--32402564	20	2.4	20	83	13	62	48	4	6	40	1.48
32402513--32402560	25	1.9	25	82	0	60	47	4	8	39	1.53
32404138--32404172	6	5.5	6	87	12	52	17	0	2	80	0.84
32405362--32405413	27	2.0	26	85	11	70	19	1	11	67	1.31
32407014--32407064	22	2.3	22	80	6	59	54	7	5	31	1.53
32408118--32408280	80	2.0	80	84	1	211	39	6	20	33	1.79
32408360--32408603	95	2.6	93	83	3	272	41	7	15	35	1.76
32408686--32408918	94	2.5	92	80	8	238	39	8	17	35	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182