genome.fa.s21.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  126  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38747982--38748028	21	2.2	21	85	7	60	6	21	36	36	1.79
38748937--38748974	20	1.9	20	84	10	51	55	7	2	34	1.43
38749911--38750010	51	2.0	51	86	4	139	45	2	27	26	1.65
38749970--38750034	11	5.9	11	76	16	64	41	1	32	24	1.64
38749970--38750037	22	3.0	23	80	20	81	41	1	33	23	1.64
38750215--38750292	40	2.0	40	86	0	111	21	30	26	20	1.98
38750215--38750323	40	2.7	40	78	2	110	20	29	27	22	1.98
38759003--38759051	22	2.1	25	88	11	77	51	4	2	42	1.32
38759015--38759065	24	2.3	21	81	18	59	50	3	0	45	1.20
38765196--38765238	17	2.5	17	80	0	59	25	16	23	34	1.95
38779658--38779780	42	2.9	42	77	8	124	23	17	18	40	1.91
38779748--38779843	42	2.3	42	81	3	113	26	23	16	33	1.96
38779833--38779932	43	2.3	45	78	13	120	21	17	24	38	1.93
38782068--38782305	39	6.0	40	82	4	277	21	28	17	33	1.96
38782068--38782305	79	3.0	79	82	7	277	21	28	17	33	1.96
38782070--38782295	118	1.9	118	89	1	355	20	28	17	33	1.95
38788737--38788802	20	3.3	20	64	8	53	19	33	18	28	1.95
38788705--38788903	40	5.0	40	88	0	265	20	28	17	33	1.95
38792396--38792532	40	3.6	39	70	11	122	22	23	23	30	1.99
38792218--38792538	75	4.4	74	75	8	298	23	22	22	32	1.98
38792383--38792492	40	3.0	35	68	12	103	23	22	25	28	2.00
38792239--38792499	144	1.8	144	83	5	348	23	21	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38800319--38800572	127	2.0	127	96	0	472	16	20	14	48	1.81
38807440--38807464	4	6.2	4	100	0	50	52	24	0	24	1.48
38808031--38808057	5	5.4	5	100	0	54	77	0	0	22	0.76
38812602--38812646	24	1.9	24	90	4	74	48	0	13	37	1.42
38819431--38819742	127	2.4	128	87	4	443	23	21	22	33	1.97
38819393--38820896	44	34.7	44	67	13	454	27	24	20	28	1.99
38819736--38820916	218	5.4	218	92	0	1927	28	25	19	26	1.99
38825084--38825223	60	2.3	60	82	0	172	25	32	18	23	1.97
38837819--38837918	25	4.0	25	74	5	78	20	24	18	38	1.93
38841952--38842000	24	2.0	25	88	4	73	40	0	16	42	1.48
38858633--38858682	25	2.0	25	100	0	100	32	20	12	36	1.89
38860430--38860506	39	2.0	39	97	0	145	33	20	28	16	1.95
38860572--38860838	32	8.3	32	80	2	209	35	22	21	20	1.96
38860568--38860841	64	4.3	64	83	3	286	36	22	21	19	1.95
38860540--38860739	96	2.1	95	85	0	265	37	22	21	19	1.95
38860568--38860835	96	2.8	96	82	3	290	36	22	21	19	1.95
38861090--38861258	27	6.3	27	89	4	220	27	25	15	31	1.95
38864006--38864046	19	2.2	19	100	0	82	36	0	14	48	1.44
38866437--38866541	32	3.2	32	64	15	86	56	5	10	27	1.56
38866379--38866607	67	3.4	68	95	2	401	56	5	11	26	1.57
38869666--38869841	81	2.1	85	84	8	229	32	12	11	42	1.79
38871746--38871783	16	2.4	16	90	0	58	31	0	34	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38871762--38871871	45	2.6	43	80	9	129	33	5	29	31	1.80
38872017--38872051	18	2.0	17	88	5	52	54	0	0	45	0.99
38871904--38872220	157	2.0	157	97	0	598	44	3	4	47	1.40
38872154--38872195	15	2.7	16	82	14	52	52	2	0	45	1.13
38872163--38872204	15	2.9	15	82	10	52	52	0	0	47	1.00
38872157--38872448	120	2.4	121	88	6	434	50	5	2	41	1.40
38871956--38872286	157	2.1	155	83	6	378	47	4	3	44	1.41
38872294--38872328	18	2.0	17	94	5	61	57	0	0	42	0.99
38872192--38872375	59	3.1	59	66	22	157	49	7	2	41	1.42
38872409--38872447	17	2.5	15	80	15	51	51	0	5	43	1.24
38872414--38872447	17	2.0	17	94	0	59	50	0	5	44	1.26
38872490--38872537	26	1.9	25	84	16	64	52	2	0	45	1.12
38874207--38874253	19	2.4	19	96	3	85	44	21	4	29	1.71
38874261--38874353	41	2.2	41	98	1	177	39	33	2	24	1.67
38874986--38875020	14	2.4	14	95	4	61	65	0	25	8	1.21
38874996--38875040	19	2.5	18	82	17	58	66	0	26	6	1.16
38876480--38876529	23	2.2	23	86	13	68	50	24	8	18	1.73
38876495--38876541	22	2.1	22	84	7	60	59	19	4	17	1.53
38877270--38877305	17	2.1	17	100	0	72	66	11	11	11	1.45
38877281--38877455	88	2.0	88	98	0	341	44	15	21	18	1.86
38886859--38886956	27	3.5	28	90	2	135	26	13	28	31	1.94
38886887--38886969	27	3.0	27	87	5	96	30	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38886859--38886970	28	4.0	27	83	6	98	28	12	25	33	1.92
38891959--38891995	19	1.9	19	100	0	74	35	16	10	37	1.83
38891962--38892003	19	2.3	19	88	8	61	38	11	14	35	1.83
38893610--38893657	22	2.1	23	84	3	62	31	10	0	58	1.32
38893955--38894082	9	12.9	10	69	20	65	35	2	0	61	1.09
38893977--38894080	28	3.6	28	86	8	131	35	0	0	63	1.01
38900440--38900475	18	2.1	18	89	5	56	80	2	16	0	0.83
38902772--38903121	126	2.8	126	96	1	632	29	16	22	32	1.95
38905508--38905733	23	10.2	23	86	5	306	25	0	26	48	1.52
38905508--38905733	44	5.1	45	88	4	293	25	0	26	48	1.52
38905764--38905800	9	4.2	9	96	3	67	59	10	0	29	1.31
38905803--38905850	25	1.9	25	91	0	78	37	18	0	43	1.51
38908961--38908998	20	1.9	20	84	10	51	57	7	0	34	1.28
38909938--38910037	51	2.0	51	86	4	139	45	3	27	25	1.68
38909997--38910065	22	3.0	23	76	18	72	42	2	33	21	1.68
38909962--38910061	11	9.4	11	67	17	59	43	3	31	23	1.69
38912329--38912366	20	1.9	20	84	10	51	57	7	0	34	1.28
38913307--38913406	51	2.0	51	86	4	139	45	3	27	25	1.68
38913366--38913434	22	3.0	23	76	18	72	42	2	33	21	1.68
38913331--38913430	11	9.4	11	67	17	59	43	3	31	23	1.69
38915432--38915556	63	2.0	63	80	3	144	30	20	23	25	1.99
38924869--38924993	62	2.0	63	87	4	182	23	20	30	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38929656--38929691	15	2.5	14	86	8	54	44	8	0	47	1.33
38932325--38932350	13	2.0	13	100	0	52	53	15	7	23	1.67
38933993--38934071	39	2.0	39	100	0	158	36	7	25	30	1.84
38935673--38935729	24	2.4	25	80	16	68	38	5	24	31	1.78
38942026--38942130	21	5.1	21	66	13	74	30	16	32	20	1.95
38942016--38942130	41	2.8	41	93	0	185	33	15	31	20	1.94
38944345--38944386	21	2.0	21	100	0	84	9	14	33	42	1.78
38945198--38945238	6	6.5	6	89	10	64	65	0	19	14	1.26
38952672--38952722	26	2.0	26	81	14	61	27	3	1	66	1.20
38952817--38952854	17	2.3	16	83	16	51	18	0	2	78	0.86
38954174--38954218	19	2.4	19	96	0	81	51	13	20	15	1.76
38968699--38968798	20	5.1	20	74	7	96	42	22	27	9	1.83
38969469--38969503	17	2.1	17	89	10	54	42	14	0	42	1.45
38971465--38971564	42	2.4	42	91	1	164	29	26	17	28	1.97
38975869--38975941	23	3.2	23	71	11	69	32	17	23	26	1.97
38975851--38975996	45	3.2	45	88	0	211	33	21	21	23	1.97
38975851--38975965	21	5.2	21	68	12	68	34	21	20	23	1.96
38977135--38977171	18	2.0	19	85	15	51	70	0	27	2	1.01
38980716--38980781	35	1.9	35	85	11	93	48	16	21	13	1.80
38987873--38987912	20	2.0	21	90	5	64	62	0	0	37	0.95
38991349--38991448	34	2.9	34	95	0	173	64	10	8	18	1.48
38991495--38991581	40	2.2	40	85	2	111	58	11	2	27	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39002411--39002455	23	2.0	23	100	0	90	40	0	8	51	1.33
39002414--39002456	13	3.5	13	75	18	56	37	0	11	51	1.39
39010511--39010543	13	2.5	13	95	0	57	39	0	12	48	1.40
39020314--39020346	16	2.1	16	100	0	66	36	6	36	21	1.78
39020326--39020422	44	2.2	44	88	5	142	30	5	29	34	1.79
39020579--39020613	18	2.0	17	88	5	52	54	0	0	45	0.99
39020672--39020713	16	2.8	15	75	10	50	59	0	0	40	0.97
39020592--39020789	106	1.9	106	96	0	369	52	6	1	40	1.34
39020655--39020713	15	3.9	16	73	22	56	59	1	0	38	1.08
39020596--39020773	37	5.0	34	69	19	105	50	7	1	41	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182