genome.fa.s21.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  119  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36459823--36459893	33	2.2	33	92	5	117	22	25	25	26	2.00
36467175--36467285	45	2.5	45	83	0	141	26	16	23	34	1.95
36471238--36471297	23	2.7	22	69	20	52	48	1	10	40	1.47
36477861--36477901	20	2.0	21	86	13	59	58	0	7	34	1.26
36481853--36483057	603	2.0	603	98	0	2347	31	23	16	28	1.96
36485859--36485932	21	3.5	22	85	10	100	35	27	22	14	1.94
36485858--36485945	21	4.0	23	82	10	96	34	25	22	18	1.96
36485859--36485945	44	2.0	41	82	6	102	34	25	22	17	1.96
36487108--36487136	3	9.7	3	100	0	58	65	0	0	34	0.93
36487265--36487301	14	2.6	14	91	0	65	56	2	0	40	1.13
36487612--36487861	89	2.8	90	84	3	317	25	23	20	30	1.99
36487612--36488041	45	9.7	45	76	9	341	26	23	19	30	1.98
36487879--36487991	44	2.6	44	82	2	138	30	22	18	28	1.97
36500391--36500439	15	3.1	16	77	14	57	61	0	4	34	1.15
36500447--36500487	20	2.0	21	86	13	59	58	0	7	34	1.26
36505995--36506038	21	2.1	21	83	8	54	52	2	2	43	1.26
36505996--36506056	29	2.0	30	81	12	72	44	3	3	49	1.35
36506633--36506678	17	2.6	17	75	3	56	41	4	4	50	1.42
36506641--36506679	16	2.4	17	86	4	62	41	5	5	48	1.47
36508154--36508213	20	3.3	18	73	15	52	63	0	0	36	0.95
36508706--36508735	14	2.1	14	100	0	60	26	0	6	66	1.16
36520855--36522004	574	2.0	572	98	0	2228	37	16	10	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36530644--36530677	17	2.0	17	94	0	59	29	14	29	26	1.95
36530796--36530845	3	17.0	3	87	4	75	28	0	2	70	0.99
36532459--36532484	12	2.2	12	100	0	52	30	15	0	53	1.42
36540201--36540399	38	5.3	37	70	11	118	25	23	23	27	2.00
36543371--36543481	35	3.2	35	80	2	89	30	16	24	28	1.96
36543982--36544157	58	3.0	58	78	4	167	34	14	27	23	1.93
36545493--36545543	25	2.0	26	88	3	77	43	9	5	41	1.62
36546543--36546571	15	1.9	15	100	0	58	48	6	6	37	1.57
36547791--36547854	27	2.4	26	84	5	83	50	7	4	37	1.52
36548105--36548135	15	2.1	15	93	0	53	61	9	0	29	1.28
36551143--36551213	6	13.2	6	80	14	50	50	12	4	32	1.59
36551210--36551237	14	2.0	14	100	0	56	71	0	14	14	1.15
36551170--36551263	32	3.0	29	74	21	84	60	4	10	24	1.47
36551188--36551259	36	2.0	36	86	10	103	62	4	11	22	1.45
36552423--36552468	17	2.6	17	93	3	74	50	19	4	26	1.66
36553594--36553637	20	2.3	19	84	4	52	27	13	2	56	1.49
36553645--36553684	18	2.2	18	90	0	62	30	20	5	45	1.72
36555779--36555883	34	3.1	34	79	5	140	17	21	16	44	1.86
36564255--36564294	13	3.0	13	85	7	53	50	7	2	40	1.44
36566571--36566676	45	2.4	45	79	6	126	19	19	22	37	1.94
36566987--36567030	14	3.1	14	83	9	54	25	2	0	72	0.96
36566992--36567037	14	3.3	13	82	14	56	26	2	0	71	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36568704--36568747	21	2.1	21	100	0	88	27	4	20	47	1.69
36573883--36573908	13	2.0	13	100	0	52	69	7	0	23	1.14
36575950--36576111	37	4.6	36	67	18	106	25	18	17	38	1.92
36575955--36576158	105	1.9	105	98	0	399	28	18	15	37	1.91
36576980--36577012	12	2.8	12	100	0	66	66	15	9	9	1.43
36577962--36577996	18	1.9	18	100	0	70	34	25	17	22	1.96
36582403--36582521	63	1.9	63	86	5	172	52	5	6	36	1.50
36587282--36587348	30	2.2	30	86	0	89	22	14	31	31	1.94
36587428--36587492	26	2.4	27	74	5	69	18	20	24	36	1.94
36588839--36588874	17	2.1	17	89	0	54	30	13	11	44	1.79
36596413--36596447	18	1.9	18	88	0	52	20	34	2	42	1.66
36601507--36601636	27	4.8	27	83	3	145	20	14	22	43	1.88
36601516--36601636	54	2.2	54	85	2	163	19	15	20	44	1.86
36608608--36608676	31	2.2	31	89	5	104	36	8	15	39	1.79
36608724--36608762	21	1.9	20	84	5	51	41	10	12	35	1.77
36610201--36610257	27	2.1	28	83	3	71	68	10	0	21	1.19
36616351--36616382	16	2.0	16	93	0	55	34	21	0	43	1.53
36624913--36624944	16	2.0	16	93	0	55	34	21	0	43	1.53
36636183--36636236	26	2.1	26	85	0	72	38	9	9	42	1.69
36650962--36651026	29	2.2	29	86	5	94	47	13	7	30	1.71
36654997--36655027	16	1.9	16	100	0	62	45	0	0	54	0.99
36655281--36655413	23	5.8	23	79	5	117	30	19	12	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36655281--36655390	46	2.4	46	83	3	132	30	19	13	37	1.90
36657282--36657343	31	2.0	31	81	3	72	33	4	8	53	1.52
36656894--36657330	149	2.9	148	87	6	639	43	3	11	42	1.57
36656919--36657330	150	2.8	146	86	7	546	43	3	11	41	1.57
36657507--36657551	22	2.1	21	83	4	54	42	0	8	48	1.34
36659506--36659555	20	2.3	22	86	10	68	26	4	12	58	1.51
36674423--36674654	56	4.1	56	98	0	446	22	21	9	45	1.81
36678676--36678797	61	2.0	61	100	0	244	44	14	9	31	1.78
36696034--36696098	23	2.8	23	81	4	60	24	23	13	38	1.91
36698984--36699161	27	6.6	27	84	3	205	29	28	15	26	1.96
36699005--36699160	82	1.9	81	88	3	233	29	28	15	26	1.96
36707046--36707223	27	6.6	27	77	6	137	30	28	15	25	1.96
36707046--36707223	54	3.3	54	78	7	164	30	28	15	25	1.96
36722776--36722871	45	2.2	45	83	3	115	45	1	5	47	1.32
36725255--36725299	24	1.9	23	95	4	81	4	24	0	71	1.05
36729405--36729503	44	2.2	45	83	1	119	32	24	21	22	1.98
36741330--36742758	717	2.0	715	92	1	2371	38	15	16	29	1.89
36743017--36743064	20	2.4	20	86	6	62	60	0	2	37	1.09
36743022--36743086	25	2.7	23	75	13	60	61	1	3	33	1.21
36743163--36743196	3	11.3	3	100	0	68	67	0	0	32	0.91
36744712--36744798	44	2.0	44	83	0	111	25	22	20	31	1.98
36744816--36745026	51	4.2	51	75	6	189	28	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36744816--36744993	97	1.8	97	85	0	248	28	23	17	31	1.97
36745213--36746001	89	8.9	89	82	2	821	25	22	23	28	1.99
36745203--36746009	267	3.0	267	81	3	924	25	22	23	29	1.99
36747242--36747326	44	1.9	45	90	7	138	17	24	16	41	1.90
36747337--36747372	11	3.4	11	88	3	56	0	19	0	80	0.71
36747335--36747373	16	2.4	17	91	4	62	0	20	0	79	0.73
36747336--36747395	19	3.3	19	82	13	56	3	18	0	78	0.89
36747335--36747384	17	3.0	17	85	8	59	4	20	0	76	0.95
36754772--36754856	3	28.3	3	84	0	98	57	3	5	32	1.40
36766654--36766718	26	2.5	25	78	9	76	21	10	23	44	1.83
36791306--36791498	51	3.8	50	86	4	262	29	26	17	26	1.97
36793694--36794376	105	6.5	106	80	5	678	34	15	18	30	1.93
36793707--36794330	210	3.0	209	84	4	758	34	15	18	31	1.93
36794316--36794591	75	3.7	74	74	8	236	39	15	18	26	1.91
36794319--36794601	150	1.9	150	81	4	347	38	15	19	27	1.91
36800434--36800465	15	2.1	15	100	0	64	25	6	31	37	1.81
36801419--36801444	13	2.0	13	100	0	52	23	0	7	69	1.14
36822257--36822316	25	2.4	23	79	15	66	40	0	1	58	1.08
36822642--36822703	29	2.4	24	69	23	61	19	17	27	35	1.94
36833714--36833856	50	2.8	50	83	1	187	20	30	23	25	1.99
36835151--36835210	29	2.1	29	93	0	102	10	40	11	38	1.75
36842570--36842619	3	16.7	3	87	0	73	30	4	2	64	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36842852--36842898	20	2.5	20	76	16	55	23	6	10	59	1.53
36853431--36853478	24	2.0	24	91	0	78	10	35	10	43	1.73
36855211--36855465	44	5.8	44	82	2	307	27	20	25	26	1.99
36855211--36855464	132	1.9	131	89	2	393	27	20	25	25	1.99
36856860--36856915	3	18.7	3	84	0	76	30	5	0	64	1.16
36876022--36876199	27	6.6	27	83	3	205	26	15	28	29	1.96
36876023--36876178	82	1.9	81	88	3	233	26	15	28	29	1.96
36876019--36876199	82	2.2	81	83	2	229	27	15	27	29	1.96
36879093--36879162	26	2.7	26	79	0	86	24	11	18	45	1.82
36896184--36896218	17	2.0	18	88	5	54	8	14	25	51	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182