genome.fa.s21.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  149  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45931462--45931734	94	2.9	92	83	10	347	44	12	3	39	1.60
45937199--45937368	66	2.6	66	86	3	218	39	17	28	14	1.89
45937339--45937408	21	3.3	21	83	0	86	31	17	45	5	1.71
45937718--45937924	43	4.9	42	85	4	274	24	19	24	32	1.98
45938712--45938819	29	3.7	29	74	15	87	57	4	0	37	1.20
45939988--45940030	21	2.0	23	82	17	56	27	32	2	37	1.70
45946098--45946137	18	2.1	20	86	9	57	37	0	5	57	1.21
45952425--45952625	104	1.9	104	90	0	321	42	9	3	43	1.56
45978382--45978454	32	2.5	27	78	19	92	26	2	20	50	1.61
45978391--45978461	32	2.2	32	94	0	124	28	2	19	49	1.62
45983680--45983712	16	2.1	16	88	5	50	45	9	0	45	1.35
45984476--45984620	23	6.3	23	82	0	182	30	24	21	24	1.99
45984484--45984619	46	3.0	45	89	4	209	30	24	21	23	1.99
45985063--45985120	30	2.0	30	83	10	75	31	25	5	37	1.78
45986357--45986399	18	2.4	18	88	7	61	48	4	0	46	1.22
45986696--45986735	10	3.9	10	86	3	53	42	0	2	55	1.13
45987868--45987918	20	2.5	21	78	9	61	54	5	1	37	1.36
45987925--45987963	20	2.0	20	85	10	53	58	7	0	33	1.26
45988759--45988783	6	4.2	6	100	0	50	84	0	0	16	0.63
45989004--45989033	15	2.0	15	93	0	51	70	0	3	26	1.03
45990374--45990409	3	12.0	3	100	0	72	66	0	0	33	0.92
45990602--45990698	43	2.3	43	88	0	140	20	20	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45990689--45990937	43	5.8	42	72	11	173	28	28	18	25	1.98
45990761--45990933	87	2.0	87	80	4	197	28	27	17	26	1.97
45990689--45990937	130	1.9	130	80	4	288	28	28	18	25	1.98
45994363--45994416	16	3.3	16	89	2	81	33	0	16	50	1.46
45994510--45994585	19	4.5	19	72	27	82	36	0	14	48	1.44
45994519--45994600	28	3.2	28	71	28	101	36	0	14	48	1.44
45994510--45994600	47	1.9	47	100	0	182	36	0	14	49	1.43
45994782--45994880	21	4.4	21	68	23	58	50	3	5	41	1.39
45994693--45994949	69	3.7	69	95	2	437	47	5	5	41	1.49
45996418--45996457	12	3.3	12	83	13	55	57	12	7	22	1.60
45996407--45996468	24	2.7	24	73	14	67	53	14	8	24	1.68
45996506--45996531	12	2.2	12	100	0	52	57	11	7	23	1.59
45996933--45996988	23	2.4	24	90	3	87	21	0	44	33	1.52
45996940--45996988	12	4.3	11	79	7	53	22	0	42	34	1.54
45997300--45997334	16	2.1	17	89	5	54	31	5	2	60	1.35
45997840--45997876	15	2.5	15	86	0	56	35	43	2	18	1.65
45997811--45997893	36	2.3	36	82	0	85	36	44	2	16	1.61
45997884--45997984	7	14.3	7	82	2	85	43	47	0	8	1.34
45997884--45997984	21	4.8	21	75	6	96	43	47	0	8	1.34
45997867--45997960	28	3.3	28	85	4	109	45	44	0	9	1.36
45999430--45999570	41	3.4	41	69	10	117	38	28	15	17	1.91
45999435--45999611	82	2.2	82	80	5	205	37	25	16	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46002140--46002166	13	2.1	13	100	0	54	22	7	40	29	1.81
46003656--46003760	51	2.1	50	90	1	165	27	9	20	42	1.82
46009657--46009698	18	2.3	19	79	8	50	23	2	2	71	1.10
46010960--46010997	20	1.9	20	89	10	60	21	0	2	76	0.91
46011523--46011588	23	3.0	23	78	14	68	27	4	0	68	1.09
46011509--46011608	40	2.3	42	80	11	105	28	4	0	68	1.08
46011546--46011612	20	3.4	20	70	10	57	32	1	0	65	1.02
46011575--46011635	26	2.6	24	80	17	67	37	0	1	60	1.07
46015302--46015353	21	2.4	21	81	18	63	67	3	1	26	1.18
46015319--46015416	41	2.5	40	84	14	139	65	0	3	31	1.08
46015348--46015381	17	2.0	17	88	0	50	70	0	0	29	0.87
46025506--46025552	20	2.3	20	81	0	58	40	23	12	23	1.89
46025609--46025663	20	2.7	20	94	2	92	41	20	9	29	1.82
46025739--46025776	20	1.9	20	88	0	58	52	13	7	26	1.67
46028651--46028697	19	2.5	19	89	0	76	38	4	0	57	1.18
46036430--46036461	12	2.6	13	85	14	50	56	6	0	37	1.25
46036508--46036549	21	2.0	21	100	0	84	23	33	9	33	1.87
46044357--46044593	117	2.0	117	100	0	474	41	13	19	25	1.88
46048906--46048945	20	2.0	20	90	0	62	50	12	10	27	1.72
46048894--46048960	34	1.9	35	87	3	100	47	11	8	31	1.71
46049349--46049388	22	1.9	20	85	10	53	65	2	0	32	1.06
46049350--46049402	21	2.8	17	81	16	52	66	1	1	30	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46049397--46049436	21	2.0	20	85	5	53	67	0	0	32	0.91
46049790--46049900	17	6.5	17	65	24	63	26	0	7	65	1.24
46049834--46049881	22	2.2	22	85	7	62	27	0	8	64	1.22
46049854--46049918	31	2.1	32	85	8	89	23	1	6	69	1.20
46049956--46050012	9	6.1	9	76	15	53	26	5	1	66	1.22
46049978--46050024	19	2.5	19	85	0	67	27	2	4	65	1.22
46051615--46051648	7	4.9	7	88	0	50	14	0	2	82	0.79
46052681--46052723	22	2.0	22	85	0	59	11	13	25	48	1.77
46052785--46053097	43	7.4	42	85	5	382	30	22	20	25	1.98
46052785--46053073	85	3.4	85	89	3	411	32	23	19	24	1.98
46053527--46053616	21	4.3	21	81	5	110	4	42	18	34	1.71
46053527--46053616	42	2.1	42	87	4	128	4	42	18	34	1.71
46058272--46058431	79	2.0	79	98	0	311	26	24	16	32	1.96
46059201--46059254	7	7.1	7	87	8	63	27	1	16	53	1.53
46059277--46059567	27	10.4	27	89	6	420	37	1	13	48	1.51
46059312--46059548	18	13.2	17	74	7	150	36	1	13	48	1.50
46059520--46059582	9	7.0	9	75	13	58	33	4	6	55	1.46
46060158--46060194	13	2.9	13	96	4	67	37	8	0	54	1.30
46062008--46062042	14	2.4	15	90	4	54	42	37	0	20	1.52
46064925--46064964	20	2.1	18	86	13	53	57	2	15	25	1.50
46066654--46067425	98	7.9	98	95	0	1310	21	21	24	32	1.98
46068728--46068767	20	2.0	20	90	0	62	0	7	5	87	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46068729--46068767	14	2.8	13	85	11	51	0	5	5	89	0.58
46079525--46079564	20	2.1	18	86	13	53	57	2	15	25	1.50
46080105--46082022	633	3.0	634	90	3	2746	32	24	20	22	1.98
46080912--46082217	653	2.0	653	100	0	2612	32	22	18	26	1.97
46084355--46084419	20	3.3	19	80	10	69	58	4	0	36	1.19
46084354--46084409	19	2.9	19	81	7	69	60	3	0	35	1.14
46084360--46084468	44	2.7	41	76	19	113	53	4	0	42	1.21
46085872--46085936	31	2.1	31	82	0	76	35	13	9	41	1.77
46089175--46089261	41	2.1	41	85	4	113	31	21	17	29	1.96
46090858--46090882	13	1.9	13	100	0	50	68	24	0	8	1.16
46094904--46095044	40	3.6	39	75	7	124	29	22	17	29	1.97
46095617--46095652	18	1.9	19	88	5	56	33	27	0	38	1.57
46095791--46095830	7	5.6	7	93	3	62	2	22	0	75	0.93
46097316--46097378	17	3.9	17	71	12	60	65	1	0	33	1.03
46097376--46097461	36	2.3	36	80	6	91	56	16	3	23	1.55
46098305--46098349	23	2.0	23	90	0	72	17	44	2	35	1.62
46100241--46100300	26	2.3	27	80	8	70	40	0	0	60	0.97
46104052--46104123	34	2.1	34	97	0	135	40	31	1	26	1.65
46104389--46104459	25	2.8	25	87	4	90	26	21	22	29	1.99
46106761--46106819	23	2.6	23	86	0	82	32	20	27	20	1.97
46106761--46106829	23	3.0	22	79	12	77	33	20	26	20	1.97
46113711--46113765	7	7.9	7	100	0	110	58	12	0	29	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46116676--46116869	106	1.8	105	85	3	273	31	13	21	32	1.93
46117304--46119288	992	2.0	992	98	0	3846	34	14	17	33	1.90
46120019--46120069	27	1.9	26	88	4	75	31	9	11	47	1.73
46127015--46127046	15	2.0	17	88	11	50	68	3	21	6	1.26
46127770--46127863	28	3.4	28	84	0	116	30	13	24	30	1.94
46128569--46129156	70	8.3	70	87	4	765	25	14	16	42	1.87
46128584--46129137	47	11.8	47	70	9	287	25	15	16	42	1.87
46135117--46135224	40	2.7	40	78	4	110	38	15	17	27	1.90
46135302--46135500	41	4.9	41	94	0	335	22	21	27	29	1.99
46136593--46136943	185	1.9	184	95	0	639	43	8	11	36	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182