genome.fa.s21.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  157  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48379254--48379306	27	1.9	27	84	3	70	64	1	0	33	1.05
48379310--48379359	23	2.1	24	82	10	59	62	2	6	30	1.31
48379322--48379391	30	2.3	33	83	16	89	60	2	5	31	1.35
48379425--48379485	12	5.5	11	76	18	63	57	1	4	36	1.30
48379433--48379486	3	18.0	3	83	7	65	59	1	3	35	1.26
48380825--48381742	143	6.4	143	86	0	1198	28	24	18	28	1.98
48380906--48381316	44	8.8	45	66	15	172	26	24	20	28	1.99
48383001--48383044	14	3.1	14	90	3	61	18	4	0	77	0.94
48383001--48383044	15	2.9	16	87	9	58	18	4	0	77	0.94
48383033--48383149	50	2.3	51	86	5	155	13	20	17	47	1.81
48384091--48384122	14	2.3	14	94	0	55	15	0	6	78	0.95
48384091--48384130	20	2.0	20	85	9	55	15	0	7	77	0.98
48386386--48386428	16	2.7	16	77	0	50	34	23	20	20	1.96
48388449--48388499	23	2.3	21	81	15	59	54	3	5	35	1.43
48391421--48391477	26	2.3	23	78	18	62	52	3	0	43	1.18
48391546--48391615	21	3.3	21	93	0	122	5	12	44	37	1.67
48392692--48392724	13	2.5	13	100	0	66	27	24	6	42	1.78
48393918--48393953	18	2.0	18	94	0	63	38	8	27	25	1.84
48396325--48396387	22	2.8	22	79	11	65	9	14	0	76	1.02
48402663--48402692	12	2.6	12	94	5	53	6	20	16	56	1.62
48403382--48403421	20	2.1	19	85	4	53	45	5	7	42	1.54
48406002--48406059	22	2.6	22	78	5	55	39	1	6	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48411506--48411548	18	2.5	17	79	20	54	58	0	0	41	0.98
48416056--48416085	16	1.9	15	93	6	51	46	3	6	43	1.46
48416056--48416096	16	2.6	16	85	11	50	43	2	9	43	1.50
48416424--48416468	22	2.0	22	91	0	72	15	24	22	37	1.93
48417734--48417905	35	4.9	35	78	12	158	44	12	15	28	1.82
48417751--48417905	17	8.9	16	76	17	114	45	12	14	27	1.81
48417919--48417974	29	1.9	29	96	0	103	57	14	14	14	1.66
48417966--48418004	20	2.0	20	94	0	69	38	10	7	43	1.67
48418122--48418179	27	2.1	28	90	3	91	37	6	6	48	1.57
48418427--48418473	10	4.7	10	83	0	58	0	19	0	80	0.70
48418421--48418468	20	2.3	22	85	7	64	0	22	0	77	0.78
48418766--48418810	13	3.8	12	77	22	51	0	20	0	80	0.72
48418757--48418804	22	2.2	21	85	10	62	4	14	0	81	0.84
48418767--48418809	22	2.0	22	90	9	70	0	20	0	79	0.74
48418936--48418987	26	2.0	26	81	7	61	5	38	0	55	1.24
48419331--48419385	22	2.5	22	76	2	58	10	21	1	65	1.33
48419659--48419691	16	2.1	16	94	0	57	21	0	6	72	1.05
48420021--48420484	73	6.0	75	85	7	479	36	19	15	27	1.92
48420021--48420493	160	3.1	154	81	8	541	37	19	15	27	1.92
48432032--48432097	30	2.2	30	94	0	114	18	4	36	40	1.71
48432047--48432103	18	3.4	18	66	28	54	17	1	36	43	1.60
48433493--48433651	18	9.0	18	71	15	82	47	12	12	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48433493--48433603	35	3.2	34	80	11	111	46	11	11	29	1.76
48433496--48433594	17	5.7	17	75	13	85	47	13	13	26	1.79
48433548--48433620	17	4.0	18	75	10	60	46	12	6	34	1.68
48433548--48433656	53	2.0	55	84	7	143	44	12	10	32	1.76
48433778--48433831	28	1.9	28	88	7	83	40	7	9	42	1.65
48434248--48434292	6	7.3	6	80	14	56	0	17	0	82	0.68
48434413--48434480	26	2.7	25	80	13	70	2	30	0	66	1.07
48434812--48434866	22	2.5	22	76	2	58	10	21	1	65	1.33
48435140--48435174	17	2.1	17	94	0	61	20	0	5	74	1.02
48435808--48436200	194	2.0	194	87	3	569	28	23	23	24	2.00
48440260--48440345	13	6.5	14	77	10	58	36	17	2	44	1.62
48440260--48440345	26	3.3	26	75	4	84	36	17	2	44	1.62
48440260--48440345	39	2.2	39	87	2	118	36	17	2	44	1.62
48440325--48440368	13	3.4	13	77	0	52	29	22	0	47	1.51
48446605--48446639	16	2.1	17	89	5	54	62	2	5	28	1.32
48454609--48454731	62	2.0	62	95	0	219	39	7	18	34	1.79
48456775--48457005	44	5.2	44	89	1	331	25	24	22	27	2.00
48466339--48466439	49	2.1	49	100	0	202	60	11	11	15	1.59
48466340--48466420	27	3.2	27	62	16	73	59	11	13	16	1.61
48467559--48467591	17	1.9	17	93	0	57	18	0	6	75	1.00
48467559--48467591	9	3.8	9	88	8	50	18	0	6	75	1.00
48467669--48467708	6	6.5	6	82	5	53	80	2	15	2	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48471599--48471645	24	2.0	24	91	0	76	14	21	25	38	1.92
48473653--48473690	20	1.9	20	88	0	58	47	0	5	47	1.24
48473816--48473846	16	2.0	16	93	6	55	41	0	0	58	0.98
48479787--48479845	31	1.9	31	86	10	86	33	3	8	54	1.48
48483820--48483850	16	1.9	16	93	0	53	16	9	3	70	1.26
48485499--48485551	20	2.8	19	76	18	58	37	1	1	58	1.20
48486926--48486960	17	2.1	17	94	0	61	48	8	17	25	1.75
48487433--48487480	24	2.0	24	95	0	87	27	25	6	41	1.79
48494371--48494456	21	4.1	21	72	1	66	47	13	19	18	1.82
48494325--48494456	42	3.2	41	78	5	131	45	15	21	17	1.85
48494528--48494575	24	2.0	24	91	0	78	25	27	4	43	1.72
48498958--48499023	26	2.5	26	92	0	114	21	24	27	27	1.99
48499015--48499076	25	2.5	25	84	5	81	24	16	24	35	1.95
48505585--48505645	28	2.1	29	84	3	79	21	19	21	37	1.94
48505585--48505663	29	2.8	29	82	5	81	25	17	18	37	1.93
48518783--48518901	60	2.0	60	91	0	193	32	0	13	52	1.46
48521246--48521316	33	2.2	33	82	5	81	14	42	11	32	1.81
48524869--48525257	192	2.0	196	89	5	594	41	10	13	34	1.79
48526754--48526816	31	2.0	32	87	3	92	3	0	57	39	1.15
48530336--48530389	7	7.7	7	91	0	90	27	12	0	59	1.34
48530323--48530396	21	3.5	21	81	0	76	28	21	0	50	1.49
48530414--48530448	15	2.2	16	90	5	54	14	8	8	68	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48532119--48532334	54	3.8	54	75	10	198	30	31	7	31	1.85
48532168--48532371	63	3.4	62	76	13	246	31	32	7	27	1.85
48532097--48532361	117	2.3	117	95	0	476	31	32	7	27	1.86
48534396--48534453	30	1.9	30	100	0	116	27	15	13	43	1.85
48540574--48540622	24	2.0	24	100	0	98	28	18	12	40	1.86
48541185--48541245	25	2.4	25	81	5	70	32	19	24	22	1.97
48541205--48541265	25	2.4	25	86	5	79	31	16	29	22	1.96
48541329--48541388	25	2.4	25	83	8	77	23	20	30	26	1.98
48541692--48541731	20	2.1	19	85	4	53	47	17	2	32	1.61
48542360--48542429	18	3.7	19	72	16	56	0	21	5	72	1.05
48546900--48547005	37	2.8	37	78	5	104	32	24	17	25	1.97
48547878--48547935	14	3.9	14	73	20	55	5	17	1	75	1.06
48553100--48553203	50	2.2	46	82	8	127	48	9	6	35	1.63
48553865--48553950	9	9.6	9	71	16	54	66	1	2	30	1.12
48554196--48554220	11	2.3	11	100	0	50	24	0	0	76	0.80
48554165--48554218	19	2.8	20	72	8	58	31	3	1	62	1.23
48554268--48554313	19	2.4	19	85	3	56	32	4	2	60	1.28
48557653--48557702	22	2.4	20	84	12	73	60	2	0	38	1.09
48557658--48557700	22	2.0	22	95	0	77	58	2	0	39	1.11
48561959--48562002	23	1.9	23	90	0	70	40	11	15	31	1.83
48561959--48562010	23	2.3	23	86	0	68	38	11	17	32	1.85
48562033--48562175	23	6.1	23	77	9	146	41	12	18	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48561990--48562112	47	2.6	48	80	3	124	40	16	16	26	1.89
48562033--48562175	70	2.0	70	91	0	232	41	12	18	27	1.86
48563021--48563145	43	2.9	43	81	15	150	28	28	20	22	1.98
48571771--48571825	3	18.7	3	92	3	94	69	0	30	0	0.89
48582039--48582089	24	2.2	23	92	3	84	43	7	17	31	1.78
48588746--48588773	14	2.0	14	100	0	56	64	7	14	14	1.48
48592129--48592154	12	2.2	12	100	0	52	15	7	19	57	1.62
48596716--48596749	18	1.9	18	88	5	52	76	8	0	14	1.01
48596902--48596958	30	1.9	30	89	7	89	57	3	3	35	1.33
48596992--48597035	23	1.9	23	85	0	61	52	0	6	40	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182