genome.fa.s21.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  125  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38397610--38397856	127	2.0	125	86	4	345	38	15	12	33	1.86
38401034--38401095	29	2.1	29	84	3	79	30	20	6	41	1.78
38402720--38402795	27	2.9	27	86	9	95	27	22	22	27	1.99
38408219--38408285	28	2.3	29	87	2	91	32	13	20	32	1.92
38410541--38410601	18	3.4	18	67	13	54	57	0	4	37	1.20
38413049--38413120	11	6.6	10	76	16	63	47	0	2	50	1.15
38413047--38413108	22	2.8	21	77	18	72	46	0	1	51	1.10
38413054--38413129	23	3.4	22	81	13	84	47	0	2	50	1.15
38414233--38414284	20	2.5	21	80	20	65	65	7	3	23	1.35
38415523--38417300	889	2.0	888	99	0	3502	29	12	17	40	1.86
38419908--38419945	13	2.9	13	92	0	58	39	23	10	26	1.87
38421369--38421473	25	4.3	25	81	9	110	18	20	20	40	1.91
38421369--38421473	50	2.2	47	83	8	122	18	20	20	40	1.91
38423773--38423822	24	2.1	23	81	3	55	66	8	6	20	1.40
38426888--38426927	20	2.0	20	85	4	55	30	15	10	45	1.78
38429467--38429495	12	2.3	13	94	5	51	20	6	13	58	1.58
38432554--38432606	22	2.4	22	74	0	52	16	9	11	62	1.54
38436012--38436083	36	2.0	35	82	15	85	38	2	2	55	1.29
38437575--38437626	12	4.1	12	74	13	50	55	1	5	36	1.35
38437569--38437623	27	2.0	27	100	0	110	60	3	3	32	1.32
38448187--38448251	30	2.2	30	86	10	89	36	3	4	55	1.36
38448197--38448258	28	2.1	30	88	5	92	40	1	4	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38448519--38448579	29	2.1	28	84	3	77	24	14	18	42	1.88
38448781--38448869	40	2.2	40	97	0	169	31	26	0	41	1.56
38448883--38448930	10	4.6	10	84	5	60	43	0	0	56	0.99
38448883--38448930	21	2.3	22	82	10	64	43	0	0	56	0.99
38448894--38448939	21	2.2	21	92	3	76	34	0	0	65	0.93
38448894--38448942	20	2.4	21	86	3	73	34	0	0	65	0.93
38450318--38450372	28	2.0	28	96	0	101	30	16	29	23	1.96
38450575--38450618	18	2.4	18	88	0	61	18	29	9	43	1.80
38450916--38451261	125	2.8	123	88	3	520	32	22	15	29	1.95
38456882--38457250	187	2.0	188	88	2	546	36	10	17	36	1.84
38459993--38460041	21	2.3	22	82	10	66	30	20	0	48	1.50
38461124--38461174	26	2.0	25	81	11	59	82	3	11	1	0.89
38461123--38461174	15	3.3	15	83	8	59	82	3	11	1	0.88
38465451--38465488	17	2.2	17	100	0	76	39	0	36	23	1.55
38467149--38467376	89	2.5	89	82	2	249	34	27	13	24	1.93
38467981--38468029	19	2.5	19	90	9	73	42	0	0	57	0.99
38468339--38468396	30	1.9	30	89	0	89	41	3	24	31	1.71
38468608--38468639	13	2.5	13	94	0	55	31	0	12	56	1.37
38468734--38468975	50	4.7	50	86	4	297	26	24	29	19	1.99
38468734--38468983	100	2.4	103	88	6	364	26	24	29	20	1.99
38482619--38482651	17	2.0	17	88	5	50	15	9	18	57	1.63
38482896--38482937	21	2.0	21	95	0	75	33	9	16	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38486657--38486854	102	1.9	102	89	2	308	29	27	21	20	1.98
38486758--38486894	42	3.5	41	74	18	155	32	27	18	21	1.97
38486756--38486932	75	2.4	75	95	0	309	32	27	19	20	1.97
38490570--38490612	21	2.0	21	82	8	52	55	4	2	37	1.33
38491653--38491696	21	2.1	21	91	4	72	56	0	4	38	1.20
38492434--38492475	18	2.3	18	87	0	57	28	2	2	66	1.16
38502271--38502313	20	2.2	19	84	16	52	37	4	9	48	1.56
38502396--38502440	9	5.1	9	78	21	51	53	2	0	44	1.13
38502669--38502714	23	2.0	23	82	0	56	32	6	4	56	1.45
38503503--38503551	26	1.9	26	83	4	64	46	10	20	22	1.80
38505971--38506022	26	2.0	27	88	3	79	15	3	40	40	1.65
38513910--38514303	191	2.0	195	87	3	571	35	16	19	28	1.94
38514798--38514823	6	4.3	6	100	0	52	69	0	0	30	0.89
38519744--38520020	27	10.2	27	85	1	331	39	16	17	25	1.91
38520140--38520199	27	2.2	27	82	5	68	23	23	15	38	1.92
38526079--38526131	23	2.4	22	76	20	56	9	18	1	69	1.25
38527915--38528083	27	6.2	27	81	2	178	41	17	14	26	1.88
38527915--38528083	81	2.1	82	85	1	223	41	17	14	26	1.88
38529316--38529382	29	2.2	29	78	5	71	50	4	17	26	1.65
38531448--38531490	22	2.0	22	90	0	68	18	25	20	34	1.96
38532269--38532305	18	2.1	18	89	0	56	35	0	18	45	1.50
38533744--38533800	5	11.2	5	98	1	105	59	0	19	21	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38536336--38536378	12	3.7	11	78	9	50	32	0	4	62	1.15
38546535--38546575	22	2.0	22	85	9	59	21	0	14	63	1.30
38553007--38553042	18	2.1	18	94	5	65	16	25	41	16	1.89
38556756--38556788	10	3.0	11	86	13	50	18	3	0	78	0.87
38556767--38556824	28	2.1	28	87	6	82	18	8	5	67	1.37
38558399--38558452	21	2.5	22	80	16	69	14	5	7	72	1.26
38572910--38572943	16	2.2	15	89	5	50	55	0	0	44	0.99
38573003--38573062	30	2.0	30	90	3	95	53	10	6	30	1.60
38582992--38583233	50	4.7	50	81	5	252	27	22	28	20	1.99
38585723--38585769	19	2.4	20	86	10	62	57	0	17	25	1.40
38586264--38586315	22	2.4	22	86	0	68	13	23	17	46	1.83
38586279--38586346	22	3.1	22	86	0	91	11	20	25	42	1.86
38594596--38594636	22	1.9	21	90	5	64	21	2	4	70	1.18
38597914--38597996	42	2.0	42	83	4	105	20	19	38	21	1.93
38598025--38598184	42	3.8	42	73	6	135	23	25	35	15	1.94
38599166--38599251	20	4.3	20	70	11	59	6	25	16	51	1.69
38599209--38599259	25	2.0	25	84	0	66	7	23	13	54	1.65
38614301--38614403	28	3.7	28	93	0	170	28	23	23	25	2.00
38615501--38615547	24	1.9	24	86	4	67	27	38	0	34	1.57
38616382--38616412	16	1.9	16	93	0	53	9	9	9	70	1.33
38617332--38617448	62	1.9	59	84	5	153	41	4	4	50	1.41
38619705--38619742	20	1.9	20	100	0	76	36	15	15	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38632613--38632669	15	3.8	16	73	17	50	19	1	5	73	1.11
38639251--38639328	37	2.1	37	85	4	104	37	30	14	17	1.90
38651050--38651094	22	2.0	22	95	0	81	24	13	13	48	1.78
38675820--38676054	27	8.5	28	85	4	230	30	28	14	26	1.95
38675820--38676054	56	4.3	55	81	4	249	30	28	14	26	1.95
38678098--38678139	21	1.9	23	85	9	61	23	4	21	50	1.68
38680614--38680658	22	2.0	22	87	8	65	51	20	2	26	1.59
38684358--38684404	23	2.0	24	83	4	60	17	17	19	46	1.84
38689327--38689364	20	2.0	20	89	5	60	23	26	18	31	1.97
38694851--38694923	37	2.0	37	83	5	94	34	15	23	27	1.94
38697400--38697434	11	3.1	11	84	8	52	48	8	2	40	1.49
38697396--38697434	12	3.3	12	85	7	62	48	7	2	41	1.45
38698480--38698526	18	2.6	18	100	0	94	74	0	14	10	1.07
38705690--38705736	17	2.8	17	87	9	62	74	8	0	17	1.05
38707866--38707896	16	1.9	16	93	0	53	70	9	9	9	1.33
38714707--38715400	100	6.9	98	79	7	503	23	20	22	34	1.97
38714707--38715400	200	3.5	199	78	5	634	23	20	22	34	1.97
38714706--38715371	50	13.3	49	64	11	208	23	19	22	34	1.97
38715509--38715875	44	7.9	44	67	20	167	26	20	19	32	1.97
38715447--38715875	142	3.0	142	94	0	734	27	20	18	33	1.96
38717199--38717265	7	9.7	7	91	8	95	13	13	0	73	1.11
38718122--38718163	10	4.1	10	80	17	50	2	19	0	78	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38729832--38729896	28	2.3	29	83	2	78	47	9	18	24	1.77
38729871--38730052	57	3.2	57	79	6	181	35	20	21	22	1.96
38729908--38730099	28	6.8	29	76	5	178	36	21	20	20	1.95
38729918--38730085	85	2.0	85	82	4	205	33	21	22	22	1.97
38738926--38738956	9	3.4	9	90	0	53	25	12	22	38	1.90
38739562--38739608	17	2.8	17	79	20	62	36	2	6	55	1.37
38745596--38746165	127	4.5	125	92	1	865	29	16	24	29	1.96
38747212--38747694	22	22.3	22	82	4	547	26	0	27	46	1.55
38747212--38747694	43	11.2	43	82	6	492	26	0	27	46	1.55
38747215--38747694	87	5.5	86	83	5	538	26	0	27	46	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182