genome.fa.s21.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  132  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40734063--40734218	82	1.9	81	81	6	190	25	16	28	30	1.96
40737499--40737622	45	2.7	46	81	3	135	22	17	13	45	1.84
40740241--40740386	40	3.7	40	85	7	172	24	22	26	26	2.00
40740245--40740419	80	2.2	79	80	8	185	26	21	26	25	1.99
40744158--40744197	21	2.0	21	85	5	55	32	15	7	45	1.74
40745273--40745465	106	1.8	106	89	2	307	23	19	17	38	1.93
40751540--40751587	21	2.2	22	85	3	62	52	0	6	41	1.27
40752063--40752094	13	2.5	13	95	5	57	3	40	0	56	1.15
40753184--40753243	14	4.0	15	78	16	54	28	3	0	68	1.05
40753177--40753244	21	3.2	20	73	10	57	26	2	2	67	1.19
40753218--40753243	7	3.7	7	100	0	52	30	0	0	69	0.89
40756048--40756156	41	2.7	40	84	2	119	31	22	18	27	1.97
40757816--40757840	13	1.9	13	100	0	50	40	24	4	32	1.73
40758052--40758092	22	1.9	22	90	5	66	63	2	17	17	1.42
40770050--40770085	15	2.5	14	86	8	54	44	8	0	47	1.33
40772009--40772062	13	4.4	13	76	15	53	70	1	1	25	1.07
40772009--40772060	17	3.0	17	79	20	63	71	1	1	25	1.07
40771999--40772049	25	2.0	25	88	7	77	68	0	5	25	1.12
40779784--40779964	40	4.5	40	82	5	179	30	20	16	32	1.95
40779783--40779964	80	2.3	80	79	4	197	30	20	15	32	1.94
40779979--40780050	36	2.0	36	83	0	90	45	16	8	29	1.76
40781449--40781521	25	2.9	25	82	13	96	23	28	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40781451--40781530	25	3.2	24	75	19	74	23	28	21	26	1.99
40791017--40791146	61	2.1	61	88	0	206	23	21	30	24	1.99
40801452--40801597	50	2.9	50	83	4	195	22	28	22	26	1.99
40809708--40809734	14	1.9	14	100	0	54	44	7	18	29	1.77
40810724--40810754	12	2.7	11	90	9	53	77	3	19	0	0.90
40812139--40812216	41	1.9	40	82	7	95	44	1	1	52	1.17
40812139--40812205	20	3.2	20	78	4	71	46	1	1	50	1.19
40820695--40820728	18	1.9	17	88	5	50	17	0	17	64	1.29
40820695--40820737	17	2.4	18	84	3	52	16	2	16	65	1.38
40824875--40824926	6	8.3	6	85	8	50	82	5	9	1	0.90
40824850--40824914	29	2.3	29	86	7	89	81	7	6	4	0.98
40824849--40824958	38	2.8	42	81	14	135	75	8	9	7	1.19
40825827--40825871	7	6.4	7	82	17	58	68	0	15	15	1.21
40825827--40825853	13	2.1	13	100	0	54	70	0	14	14	1.17
40825812--40825862	8	6.4	8	80	19	54	72	0	13	13	1.12
40825827--40825871	15	3.2	14	87	9	58	68	0	15	15	1.21
40827073--40827596	44	11.9	43	71	13	252	25	20	27	26	1.99
40827073--40827595	89	5.9	87	75	8	423	26	20	27	26	1.99
40827076--40827596	133	3.9	133	72	7	382	25	20	27	26	1.99
40827079--40828209	262	4.3	264	75	9	612	26	19	26	27	1.98
40827167--40827849	174	3.9	174	75	11	705	26	19	26	28	1.99
40827737--40828289	44	12.6	44	68	12	242	26	17	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40827185--40828115	133	7.1	133	75	8	747	26	18	26	28	1.98
40827970--40828498	174	3.1	174	87	3	644	26	19	26	27	1.99
40830066--40830098	3	11.0	3	93	0	57	33	3	0	63	1.10
40830803--40830836	18	1.9	17	88	5	50	17	0	17	64	1.29
40830803--40830845	17	2.4	18	84	3	52	16	2	16	65	1.38
40838851--40838963	41	2.8	41	82	5	140	33	23	23	19	1.97
40842934--40843071	41	3.4	41	80	0	150	32	27	19	20	1.97
40844154--40844225	33	2.2	34	78	14	87	58	9	2	29	1.44
40848243--40848449	106	2.0	104	85	7	285	36	5	15	42	1.70
40865639--40865675	12	3.2	12	96	3	67	70	0	16	13	1.17
40866177--40866214	14	2.6	16	84	16	55	44	0	0	55	0.99
40873322--40873386	27	2.4	27	89	0	94	41	9	13	35	1.77
40883904--40883972	16	4.2	16	96	3	129	24	0	37	37	1.56
40883904--40883972	33	2.1	32	97	2	129	24	0	37	37	1.56
40883953--40884043	45	2.0	45	85	2	121	27	6	28	37	1.82
40884188--40884242	15	3.4	16	80	16	53	54	1	0	43	1.10
40884194--40884242	16	2.9	18	80	20	61	55	0	0	44	0.99
40884223--40884422	61	3.3	61	70	14	189	49	7	1	42	1.39
40884307--40884358	15	3.6	15	80	12	56	53	1	0	44	1.11
40884191--40884483	120	2.4	121	93	1	500	50	5	1	42	1.34
40884442--40884482	16	2.5	17	85	14	52	53	0	2	43	1.13
40894673--40894699	14	1.9	14	100	0	54	22	18	7	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40895156--40895313	48	3.3	48	89	0	235	38	20	5	35	1.76
40900897--40900921	13	1.9	13	100	0	50	32	20	16	32	1.94
40901470--40901647	27	6.6	26	82	6	178	26	15	28	29	1.96
40901471--40901626	82	1.9	81	86	3	224	26	16	28	28	1.97
40901467--40901647	82	2.2	81	82	2	220	27	16	27	29	1.97
40901552--40901658	27	3.9	27	85	1	70	26	14	28	30	1.95
40909948--40910125	27	6.6	27	83	3	205	26	15	28	29	1.96
40909949--40910104	82	1.9	81	88	3	233	26	15	28	29	1.96
40909945--40910125	82	2.2	81	83	2	229	27	15	27	29	1.96
40921517--40921691	44	4.0	44	87	1	255	25	23	3	48	1.67
40928066--40928350	50	5.6	50	91	2	426	25	21	31	21	1.98
40934941--40935226	50	5.6	50	82	4	304	26	20	28	24	1.99
40936923--40937021	39	2.5	39	81	3	119	31	5	23	40	1.76
40938518--40938762	31	7.8	30	68	12	89	42	20	7	28	1.80
40938655--40938762	30	3.6	30	71	8	85	45	23	6	25	1.76
40959315--40959363	23	2.1	23	88	0	71	44	22	6	26	1.76
40973557--40973610	20	2.7	20	82	0	63	31	9	9	50	1.66
40982390--40982431	20	2.2	19	83	12	50	19	19	2	59	1.49
40983074--40983168	25	3.8	25	91	0	154	35	24	20	20	1.95
40983074--40983168	50	1.9	50	95	0	172	35	24	20	20	1.95
40988221--40988256	16	2.2	16	90	0	54	55	2	16	25	1.55
40989633--40989844	40	5.3	40	90	1	293	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40992444--40992506	21	3.2	20	74	24	55	42	19	1	36	1.61
40999733--40999835	21	4.8	20	68	21	59	63	1	0	33	1.12
40999767--40999834	18	3.6	19	76	9	68	61	1	1	35	1.14
41000344--41000591	10	25.4	9	64	21	58	33	2	3	60	1.25
41000355--41000396	10	4.3	10	81	6	59	35	0	0	64	0.94
41000476--41000525	20	2.5	20	83	0	64	24	0	4	72	1.02
41000514--41000562	19	2.6	18	78	9	53	36	0	2	61	1.08
41001311--41001364	11	4.8	12	76	19	62	25	29	1	42	1.66
41001311--41001364	22	2.4	23	84	12	76	25	29	1	42	1.66
41001326--41001423	51	1.9	50	83	8	126	25	24	2	47	1.62
41003243--41003282	18	2.2	18	90	0	62	20	30	10	40	1.85
41008061--41008100	18	2.2	18	90	0	62	20	30	10	40	1.85
41008355--41008404	21	2.4	21	76	6	57	36	34	28	2	1.69
41008510--41008605	45	2.1	46	84	5	133	34	0	12	53	1.39
41008574--41008621	25	1.9	25	91	0	78	50	0	8	41	1.33
41008529--41008659	70	1.9	70	91	0	217	38	0	12	49	1.40
41008634--41008771	60	2.3	60	97	0	258	34	4	13	47	1.62
41011590--41011887	125	2.4	125	88	2	438	30	22	18	29	1.97
41017053--41017211	80	2.0	80	97	0	300	35	20	6	38	1.78
41018165--41018349	51	3.7	50	79	6	212	30	28	16	24	1.97
41018163--41018347	101	1.8	101	89	3	291	30	27	16	24	1.97
41019983--41020041	3	19.7	3	100	0	118	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41025407--41025437	16	1.9	16	93	0	53	48	16	9	25	1.76
41028423--41028479	21	2.8	21	86	5	73	14	22	17	45	1.84
41028724--41028761	19	2.1	19	85	14	53	36	23	7	31	1.84
41042824--41043269	67	6.7	68	80	7	441	25	21	16	37	1.93
41042824--41043270	133	3.3	132	81	6	499	25	21	16	37	1.93
41042838--41043269	200	2.2	200	84	4	550	25	21	16	37	1.93
41047465--41047510	24	1.9	24	95	0	83	41	15	13	30	1.85
41047680--41047712	11	2.8	12	86	9	50	51	12	18	18	1.76
41047704--41047751	12	4.0	12	75	0	51	43	16	14	25	1.86
41047692--41047749	24	2.4	24	85	0	80	46	17	15	20	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182