genome.fa.s21.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  98  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29628593--29629146	62	9.3	62	83	10	660	24	0	25	49	1.52
29628589--29629129	89	6.1	88	88	7	749	24	0	24	49	1.52
29629207--29629255	25	1.9	25	87	4	71	38	16	4	40	1.67
29629370--29629421	24	2.2	24	89	0	77	1	23	32	42	1.65
29629676--29629721	18	2.6	18	82	0	56	39	8	30	21	1.84
29630366--29630395	7	4.4	7	95	4	53	60	10	0	30	1.30
29631409--29631472	30	2.1	31	91	2	103	64	0	0	35	0.94
29631466--29631541	40	1.9	40	89	5	118	44	0	23	31	1.54
29633112--29633138	11	2.5	11	100	0	54	81	0	0	18	0.69
29649608--29649642	15	2.2	16	90	5	54	31	8	0	60	1.27
29650307--29650344	13	2.8	14	80	19	53	21	7	5	65	1.38
29652386--29652436	20	2.5	20	90	0	75	17	15	15	50	1.78
29654106--29654228	62	2.0	62	93	0	210	22	18	12	46	1.82
29668759--29668808	21	2.4	21	86	0	64	22	14	26	38	1.91
29670969--29671011	21	2.0	21	81	0	50	51	16	0	32	1.45
29678200--29678342	43	3.3	43	83	3	155	25	32	18	24	1.97
29678371--29678576	44	4.7	43	81	2	205	23	27	20	27	1.99
29678759--29678795	19	1.9	19	94	0	65	59	2	10	27	1.44
29683034--29683128	46	2.1	46	95	0	172	26	29	11	32	1.91
29684492--29684533	9	4.8	9	77	16	52	30	2	21	45	1.65
29684558--29684604	23	2.0	23	95	0	85	63	0	0	36	0.94
29684878--29684919	22	1.9	22	95	0	75	38	0	14	47	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29685819--29685858	12	3.3	12	85	0	53	55	12	7	25	1.63
29685808--29685869	24	2.7	24	76	14	67	51	14	8	25	1.69
29685907--29685932	12	2.2	12	100	0	52	57	11	7	23	1.59
29686550--29686605	16	3.5	16	80	7	69	23	7	3	66	1.33
29687284--29687326	22	2.0	22	85	0	59	37	44	0	18	1.50
29687394--29687420	14	1.9	14	100	0	54	44	33	0	22	1.53
29687422--29687454	14	2.3	15	94	5	59	36	33	0	30	1.58
29687833--29688152	41	7.8	41	83	2	338	29	28	23	18	1.98
29693655--29693706	27	1.9	27	88	0	77	25	15	17	42	1.88
29693664--29694253	27	22.4	27	80	5	600	19	15	21	43	1.88
29694009--29694204	46	4.1	46	78	12	180	20	17	17	44	1.87
29693979--29694258	100	2.8	100	91	1	420	18	16	20	45	1.86
29694082--29694226	73	2.0	73	87	0	209	18	16	20	44	1.86
29694136--29694172	19	1.9	19	88	0	56	18	21	10	48	1.78
29698011--29698055	6	7.5	6	85	9	65	73	0	0	26	0.84
29698010--29698067	17	3.3	17	87	4	71	70	1	1	25	1.06
29699432--29699544	19	5.8	19	82	4	145	37	9	15	37	1.81
29699433--29699544	59	1.9	59	86	0	161	37	9	15	37	1.80
29700733--29700929	98	2.0	98	93	0	340	28	10	23	36	1.89
29702582--29702672	32	2.8	32	96	0	164	38	14	17	29	1.89
29711165--29711333	27	6.3	26	81	6	160	45	20	17	15	1.85
29711165--29711333	54	3.1	54	85	3	216	45	20	17	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29711187--29711335	27	5.6	27	81	7	169	44	19	18	17	1.87
29714447--29714471	13	1.9	13	100	0	50	56	8	0	36	1.29
29717456--29717720	33	8.0	33	80	4	284	28	18	21	32	1.96
29717456--29717720	99	2.7	99	84	3	329	28	18	21	32	1.96
29720813--29720848	17	2.1	17	100	0	72	22	11	27	38	1.88
29721575--29721631	29	2.0	29	96	0	105	22	28	8	40	1.84
29723366--29723399	5	6.8	5	93	0	59	20	55	0	23	1.43
29725855--29725996	27	5.3	26	84	5	151	39	20	19	20	1.93
29732300--29732736	27	16.2	27	79	10	366	45	18	17	18	1.86
29732300--29732748	81	5.6	80	79	8	439	44	18	17	18	1.87
29732948--29733023	26	2.8	27	76	6	73	17	22	22	38	1.93
29737837--29737890	20	2.7	20	88	0	72	16	20	3	59	1.52
29738620--29738888	138	2.0	137	82	5	337	36	27	16	20	1.93
29739256--29739295	20	2.2	19	86	13	57	37	15	5	42	1.68
29741478--29741536	30	1.9	31	86	3	84	28	20	3	47	1.66
29742059--29742087	5	5.8	5	100	0	58	37	0	0	62	0.96
29744029--29744088	27	2.3	27	88	2	86	36	15	23	25	1.93
29744161--29744222	24	2.6	24	86	0	79	22	8	20	48	1.76
29744356--29744458	26	4.0	26	83	2	118	16	22	23	37	1.93
29750494--29750631	67	2.1	67	90	0	213	22	35	23	18	1.96
29750501--29750650	67	2.2	67	86	2	203	21	36	23	19	1.95
29752201--29752252	21	2.5	20	75	3	50	50	5	3	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29753795--29753836	20	2.2	19	87	12	59	16	21	4	57	1.58
29755350--29755391	20	2.2	19	87	12	59	16	21	4	57	1.58
29757406--29757590	79	2.3	82	83	7	229	24	27	22	24	2.00
29757387--29757590	40	5.1	40	81	8	229	24	27	22	25	2.00
29759496--29759520	2	12.5	2	100	0	50	52	0	0	48	1.00
29760121--29760158	20	1.9	20	88	0	58	15	21	7	55	1.66
29761777--29761954	27	6.6	25	82	11	131	42	23	15	19	1.89
29761777--29762276	54	9.1	54	71	11	223	42	21	16	19	1.89
29761944--29761971	14	2.0	14	100	0	56	35	42	7	14	1.73
29761918--29761995	41	1.9	41	86	0	111	41	28	16	14	1.87
29761864--29762046	94	1.9	95	85	3	253	42	24	14	18	1.88
29761956--29762277	27	12.1	27	79	6	316	43	20	17	19	1.89
29761993--29762276	106	2.7	107	84	3	367	43	19	16	19	1.88
29764472--29764513	12	3.5	12	75	12	50	33	0	42	23	1.55
29764472--29764518	24	1.9	24	91	4	76	34	0	38	27	1.57
29765123--29765585	27	17.2	27	77	3	403	43	21	15	19	1.87
29765123--29765585	81	5.7	80	80	4	448	43	21	15	19	1.87
29771774--29771815	20	2.2	19	87	12	59	16	21	4	57	1.58
29777466--29777549	16	5.2	16	75	5	80	47	11	17	22	1.80
29777466--29777533	33	2.1	33	82	0	82	48	11	17	22	1.79
29779453--29779481	14	2.0	15	93	6	51	10	13	0	75	1.04
29782538--29782586	17	2.6	19	73	26	59	22	8	36	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29793683--29793765	37	2.2	37	91	0	130	28	30	16	24	1.97
29793832--29793970	37	3.8	37	97	2	257	23	33	20	23	1.97
29794181--29794753	47	12.1	47	87	5	744	26	29	12	30	1.93
29794418--29794491	22	3.2	22	63	10	58	25	29	14	29	1.95
29797849--29797906	18	3.3	18	79	13	57	37	10	15	36	1.82
29803417--29803484	34	2.0	34	100	0	136	41	11	2	44	1.56
29808155--29808217	6	10.3	6	86	8	56	76	3	6	14	1.11
29808152--29808217	18	3.7	18	82	8	64	75	3	6	15	1.11
29811146--29811174	14	2.1	14	100	0	58	72	0	0	27	0.85
29814106--29814139	17	2.0	17	94	0	59	52	8	11	26	1.67
29814420--29814466	17	2.7	18	87	6	62	23	36	4	36	1.75
29824746--29824930	79	2.3	81	82	9	220	25	26	22	24	2.00
29824746--29824930	40	4.7	40	79	12	202	25	26	22	24	2.00
29837084--29837345	39	6.7	40	88	7	337	24	27	22	25	2.00
29840370--29840413	12	3.8	12	81	6	63	38	15	4	40	1.68
29840524--29840571	24	1.9	25	83	8	62	29	18	4	47	1.67
29841363--29841392	14	2.1	15	93	6	53	23	10	0	66	1.21
29844202--29844470	54	5.0	53	81	10	140	21	18	19	39	1.92
29844232--29844470	27	8.9	27	89	0	329	20	18	20	40	1.91
29851134--29851901	389	2.0	389	90	1	1207	27	12	20	39	1.88
29852113--29852151	21	1.9	20	84	5	51	15	10	23	51	1.73
29852312--29852337	10	2.6	10	100	0	52	11	34	7	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29852848--29852988	70	2.0	70	100	0	282	34	18	12	34	1.89
29854627--29854714	25	3.5	24	76	13	88	32	20	25	21	1.97
29859179--29859288	33	3.3	33	83	3	159	31	7	14	46	1.72
29859265--29859306	18	2.3	18	100	0	84	23	0	26	50	1.50
29860658--29860770	28	3.6	28	66	26	75	32	7	4	54	1.49
29860660--29860759	32	3.0	32	72	18	105	32	8	4	56	1.47
29860757--29860785	15	1.9	15	100	0	58	20	10	6	62	1.50
29865438--29866111	44	15.7	44	69	14	234	27	24	19	28	1.99
29865433--29866113	216	3.2	215	88	2	989	27	24	19	28	1.98
29878094--29878227	67	2.0	67	95	0	241	32	11	16	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182