genome.fa.s21.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  35  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11420453--11420526	30	2.5	30	86	8	98	21	20	18	39	1.93
11420453--11420517	20	3.2	20	71	16	53	23	21	16	38	1.93
11425841--11426042	42	4.8	42	83	3	255	38	21	17	22	1.93
11426586--11426751	41	4.0	41	81	1	181	21	27	16	34	1.94
11429509--11429556	20	2.5	20	76	10	55	75	2	2	20	1.02
11437111--11437162	20	2.5	20	81	6	59	36	23	13	26	1.92
11452205--11452229	13	1.9	13	100	0	50	56	12	8	24	1.62
11452270--11452342	37	2.0	37	91	5	121	36	8	15	39	1.77
11457136--11457320	79	2.3	81	83	9	229	24	22	27	25	2.00
11457137--11457320	40	4.6	39	81	11	189	25	22	27	25	2.00
11457137--11457353	79	2.7	79	80	9	194	26	22	27	24	2.00
11457479--11457572	47	2.0	47	100	0	188	19	19	27	34	1.96
11468777--11468806	11	2.7	11	94	0	51	23	0	6	70	1.11
11478573--11478708	69	2.0	69	98	0	263	27	32	13	26	1.93
11481722--11481808	45	1.9	45	83	4	113	26	21	12	39	1.89
11489123--11489148	9	2.9	9	100	0	52	88	0	0	11	0.52
11493552--11493595	5	9.6	5	80	14	51	84	0	0	15	0.63
11493557--11493595	13	3.1	13	89	10	55	84	0	0	15	0.62
11495214--11495436	46	4.9	45	77	1	158	34	19	19	26	1.96
11495179--11495433	92	2.8	93	77	2	280	33	19	19	27	1.96
11499871--11500046	46	3.8	45	75	10	176	22	20	27	29	1.98
11499867--11500038	93	1.8	93	89	0	272	22	20	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11507789--11507969	40	4.5	40	86	7	235	24	27	23	24	2.00
11507750--11507969	80	2.8	80	79	10	243	25	27	22	24	2.00
11512487--11512803	158	2.0	158	100	0	634	26	18	23	31	1.98
11513446--11513522	18	4.5	17	77	11	77	9	16	3	70	1.29
11513415--11513522	12	9.1	12	69	19	66	9	18	2	69	1.28
11513416--11513508	6	15.3	6	69	5	62	6	18	3	72	1.20
11516129--11516167	20	2.0	20	89	0	60	33	15	25	25	1.95
11519778--11520039	39	6.7	40	87	7	337	25	22	27	24	2.00
11536328--11536398	29	2.5	28	88	4	97	36	9	25	28	1.88
11547819--11547844	12	2.2	12	100	0	52	53	15	7	23	1.67
11548483--11548552	34	2.1	34	100	0	140	35	24	14	25	1.93
11553273--11553324	16	3.2	16	94	0	86	28	0	36	34	1.58
11553305--11553399	44	2.1	44	86	1	127	33	6	26	33	1.82
11553560--11553594	18	2.0	17	88	5	52	54	0	0	45	0.99
11553447--11553761	155	2.0	157	94	1	553	44	2	5	46	1.41
11553695--11553736	15	2.7	16	82	14	52	52	2	0	45	1.13
11553704--11553745	15	2.9	15	82	10	52	52	0	0	47	1.00
11553814--11553865	15	3.6	15	80	12	56	53	1	0	44	1.11
11556320--11556489	40	4.3	40	85	0	207	24	30	21	23	1.99
11560908--11560965	10	5.7	10	76	11	64	29	27	13	29	1.94
11560908--11560968	20	3.0	20	83	9	79	27	26	13	32	1.93
11567611--11567648	18	2.2	17	90	9	60	63	5	10	21	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11573829--11574352	165	3.2	165	100	0	1048	28	11	29	29	1.92
11574649--11574700	18	2.9	18	80	8	61	15	19	5	59	1.56
11574705--11574796	6	14.8	6	73	4	76	5	19	2	72	1.14
11575750--11575788	21	1.9	20	89	5	60	7	5	0	87	0.68
11575750--11575798	10	4.7	10	82	7	53	12	4	0	83	0.77
11575749--11575788	11	3.6	11	83	10	55	7	5	0	87	0.66
11575749--11575798	20	2.4	21	86	6	66	12	4	0	84	0.76
11577326--11577364	20	1.9	21	89	5	62	35	12	28	23	1.91
11583030--11583137	54	2.0	54	98	0	207	25	25	3	46	1.69
11583149--11583185	14	2.6	14	95	0	65	43	0	2	54	1.14
11587017--11587080	22	2.9	22	78	0	83	26	31	6	35	1.81
11591533--11591564	13	2.6	12	95	5	55	78	6	3	12	1.06
11591530--11591566	11	3.2	11	85	14	56	67	8	2	21	1.29
11596091--11596130	18	2.2	18	86	4	53	12	27	0	60	1.33
11597189--11597237	14	3.6	14	97	2	91	18	10	0	71	1.13
11597280--11597324	12	3.7	12	85	5	63	11	4	8	75	1.17
11597279--11597328	13	3.9	13	92	5	84	12	6	10	72	1.28
11597643--11597736	46	2.0	46	93	4	163	35	22	18	24	1.96
11606446--11606775	19	17.6	18	67	19	106	46	11	12	30	1.76
11606446--11606501	18	3.1	17	85	14	69	50	10	10	28	1.71
11606453--11606540	42	2.0	42	85	8	115	48	13	12	25	1.77
11606497--11606587	37	2.5	36	76	15	98	41	12	10	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11606632--11606687	16	3.4	16	78	4	67	46	8	10	33	1.70
11606692--11606742	25	2.0	25	84	7	66	52	13	11	21	1.72
11606673--11606766	46	2.1	46	86	7	131	52	10	11	25	1.70
11606799--11606890	23	4.2	23	81	12	113	39	11	7	41	1.71
11606869--11606903	18	1.9	18	88	0	52	48	14	11	25	1.77
11608178--11608279	30	3.4	30	82	2	107	43	3	22	30	1.71
11608291--11608405	60	1.9	60	100	0	230	40	8	10	40	1.70
11609694--11609735	20	2.0	20	86	9	57	45	0	0	54	0.99
11609717--11609751	17	2.1	16	89	5	52	42	0	0	57	0.99
11610473--11610889	17	23.2	18	69	14	193	47	7	12	32	1.70
11610758--11610876	35	3.4	34	78	12	116	50	5	10	32	1.61
11610524--11610876	36	9.9	34	68	15	121	47	7	11	32	1.68
11610994--11611036	22	2.0	22	86	4	61	39	6	13	39	1.72
11611203--11611265	5	12.0	5	90	6	54	71	0	0	28	0.86
11611204--11611254	22	2.4	22	83	3	59	74	0	0	25	0.82
11611416--11611457	17	2.5	16	82	17	50	0	19	2	78	0.86
11611747--11611805	3	18.0	3	86	13	73	0	33	0	66	0.92
11611737--11611804	16	4.1	16	87	7	91	0	29	0	70	0.87
11611737--11611801	34	1.9	33	87	3	94	0	29	0	70	0.87
11612164--11612280	30	3.9	29	79	11	103	45	3	21	29	1.68
11612179--11612280	30	3.4	30	87	2	143	45	3	21	29	1.70
11612145--11612280	60	2.3	59	83	5	159	42	3	22	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11613550--11613633	26	3.2	26	96	0	150	34	5	23	35	1.80
11615420--11615706	137	2.1	137	96	0	520	25	18	24	32	1.97
11617866--11617898	16	2.1	16	88	11	50	60	12	6	21	1.53
11619120--11619149	15	1.9	16	93	6	53	10	3	33	53	1.51
11619521--11620272	205	3.7	205	91	0	1182	28	22	18	30	1.97
11628681--11628713	16	2.1	16	88	11	50	57	12	6	24	1.57
11629922--11629951	15	1.9	16	93	6	53	10	3	33	53	1.51
11630882--11630914	10	3.4	10	87	4	50	18	6	0	75	1.00
11631623--11631692	3	23.7	3	74	8	54	34	4	2	58	1.32
11631730--11631820	26	3.5	26	71	15	71	28	9	1	60	1.36
11631996--11632196	3	67.3	3	72	5	122	30	8	1	58	1.38
11632186--11632220	18	1.9	18	88	0	52	20	11	8	60	1.57
11633871--11633919	25	2.0	25	95	0	89	46	0	18	34	1.49
11635277--11635336	29	2.1	28	87	6	84	45	5	0	50	1.23
11635326--11635362	17	2.1	17	90	5	56	45	0	0	54	1.00
11642494--11642548	21	2.6	22	91	8	96	23	9	40	27	1.85
11642660--11642706	19	2.6	18	82	3	58	59	4	0	36	1.17
11642830--11642910	36	2.3	34	80	18	94	51	4	2	40	1.37
11646084--11646157	29	2.6	29	81	12	82	60	1	1	36	1.13
11646383--11646418	18	2.0	18	94	0	63	47	2	0	50	1.15
11646439--11646514	29	2.6	30	76	4	82	34	0	1	64	1.02
11647137--11647186	17	3.0	16	82	5	55	68	2	2	28	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11647137--11647199	26	2.4	27	87	10	80	69	3	1	25	1.12
11647267--11647349	26	3.2	26	62	21	66	48	8	7	36	1.61
11647293--11647374	25	3.2	25	62	21	62	47	6	7	39	1.56
11647240--11647394	51	3.0	51	98	0	292	45	7	7	40	1.59
11648376--11648423	19	2.6	18	84	15	55	27	0	6	66	1.15
11650197--11650225	15	1.9	15	100	0	58	37	6	48	6	1.57
11651063--11651108	20	2.3	21	82	14	62	26	17	28	28	1.98
11660298--11660348	25	2.0	26	84	3	68	72	0	1	25	0.95
11666838--11666943	53	2.0	53	96	0	194	34	12	9	43	1.75
11667946--11667974	14	2.1	14	100	0	58	20	6	6	65	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182