genome.fa.s21.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  145  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44600521--44600576	21	2.7	21	86	2	69	37	1	0	60	1.07
44600819--44600901	35	2.3	37	79	12	100	26	14	9	49	1.74
44600788--44601075	18	16.3	18	70	14	161	30	14	11	44	1.80
44600845--44601076	35	6.6	35	76	12	147	30	14	11	43	1.80
44601012--44601093	35	2.4	34	81	4	83	35	9	9	45	1.70
44602769--44602793	4	6.2	4	100	0	50	24	24	0	52	1.48
44608451--44608498	16	3.3	15	83	11	64	83	12	4	0	0.79
44608451--44608498	15	3.2	16	85	8	66	83	12	4	0	0.79
44608451--44608506	10	5.5	10	75	12	51	83	10	3	1	0.83
44609351--44610079	77	9.2	74	75	15	489	27	16	18	36	1.93
44609351--44610079	154	4.6	152	79	12	714	27	16	18	36	1.93
44609650--44610072	78	5.3	78	81	8	421	28	17	18	35	1.93
44609484--44609805	167	1.9	167	92	1	538	27	16	19	35	1.94
44609518--44610079	78	6.9	85	72	16	309	28	16	18	35	1.93
44609351--44610079	245	3.1	231	79	12	701	27	16	18	36	1.93
44609673--44610049	155	2.4	153	81	8	400	28	16	18	36	1.92
44610272--44610370	30	3.4	30	87	2	130	32	21	5	41	1.75
44610752--44610798	23	2.0	23	83	0	58	76	6	14	2	1.08
44610772--44610821	17	3.0	17	72	13	50	78	2	20	0	0.86
44610913--44611002	7	12.7	7	68	13	51	74	0	24	1	0.89
44610960--44611003	12	3.7	11	82	14	52	81	0	15	2	0.78
44611089--44611134	22	2.0	22	87	8	65	71	2	21	4	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44611087--44611141	27	2.1	26	82	3	65	70	7	18	3	1.25
44611232--44611319	35	2.5	35	83	10	115	84	0	15	0	0.63
44611232--44611329	21	4.5	22	82	10	114	82	0	17	0	0.67
44611235--44611316	1	82.0	1	70	0	56	85	0	14	0	0.60
44611230--44611329	11	9.2	11	82	16	104	82	0	18	0	0.68
44611485--44611511	5	5.4	5	100	0	54	37	0	0	62	0.95
44611515--44611540	5	5.2	5	100	0	52	23	0	0	76	0.78
44611843--44612143	17	16.9	18	74	13	214	29	13	10	45	1.78
44611843--44611981	54	2.6	53	84	5	167	29	13	10	46	1.77
44611843--44612144	35	8.5	34	75	14	209	30	13	10	45	1.78
44611897--44612144	35	6.9	35	79	6	214	29	13	11	45	1.79
44611884--44612152	71	3.8	70	74	10	222	30	13	10	46	1.77
44620877--44620911	18	1.9	18	88	0	52	42	17	8	31	1.79
44627720--44627744	9	2.8	9	100	0	50	68	0	8	24	1.16
44628912--44628954	13	3.1	14	84	12	54	60	0	0	39	0.97
44631049--44631094	23	2.0	23	86	0	65	17	21	10	50	1.77
44631671--44631703	18	1.9	17	88	11	50	54	0	3	42	1.15
44631923--44631960	20	1.9	20	89	10	60	50	15	5	28	1.66
44638043--44638094	24	2.2	24	89	0	77	55	9	1	32	1.43
44640008--44640059	24	2.2	24	89	0	77	55	9	1	32	1.43
44640280--44640341	31	2.0	31	93	0	106	40	6	22	30	1.79
44643350--44643552	41	5.0	41	96	0	352	24	26	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44644054--44644150	48	2.0	48	95	0	176	32	12	8	46	1.71
44645254--44645278	13	1.9	13	100	0	50	68	24	0	8	1.16
44658202--44658242	19	2.1	19	86	9	55	39	9	2	48	1.49
44658503--44658559	28	2.1	28	83	6	73	45	1	3	49	1.29
44659250--44659315	29	2.2	29	84	10	80	31	9	10	48	1.69
44659275--44659338	30	2.2	29	82	2	74	32	9	9	48	1.67
44663691--44663759	3	22.7	3	77	14	70	27	2	1	68	1.13
44676695--44676792	44	2.2	44	80	7	101	31	18	19	30	1.96
44676824--44677026	44	4.6	44	84	4	241	30	18	24	26	1.98
44678597--44678649	3	17.7	3	82	7	63	28	3	1	66	1.20
44678598--44678705	41	2.7	41	78	17	102	27	5	3	62	1.34
44686984--44687144	45	3.6	45	93	3	272	33	16	22	27	1.95
44688092--44688207	57	2.0	59	88	10	175	31	23	23	22	1.99
44688367--44688493	67	1.9	67	95	0	227	22	18	31	28	1.97
44689999--44690053	24	2.4	22	82	11	65	18	3	3	74	1.11
44705206--44705367	81	2.0	81	98	0	315	40	10	19	29	1.85
44706025--44706248	113	2.0	112	95	1	405	29	15	15	39	1.88
44714635--44714667	16	2.1	16	100	0	66	36	6	36	21	1.78
44714881--44714922	15	2.7	16	82	14	52	52	2	0	45	1.13
44714890--44714931	15	2.9	15	82	10	52	52	0	0	47	1.00
44714879--44715332	120	3.9	120	92	3	714	48	6	2	42	1.41
44715117--44715162	16	2.9	16	78	12	51	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44715117--44715171	15	3.7	15	79	13	53	52	1	0	45	1.11
44718454--44718484	16	1.9	16	93	0	53	25	6	12	54	1.62
44718497--44718617	64	1.9	64	98	0	233	30	7	9	52	1.62
44718685--44718734	26	1.9	26	88	8	75	44	0	0	56	0.99
44719069--44719221	61	2.5	61	98	0	297	44	13	9	32	1.76
44731210--44731254	23	2.0	23	100	0	90	26	26	28	17	1.98
44735500--44735526	2	13.5	2	100	0	54	51	0	48	0	1.00
44735586--44735623	19	2.1	18	95	5	67	86	5	5	2	0.76
44735586--44735623	18	2.1	19	90	5	60	86	5	5	2	0.76
44735591--44735640	17	2.8	17	84	9	55	80	6	12	2	0.98
44739270--44739383	21	5.2	21	73	15	88	22	6	11	59	1.54
44739272--44739460	45	4.3	45	80	4	183	20	8	12	58	1.60
44739371--44739444	21	3.4	21	77	17	78	21	13	14	50	1.78
44745285--44745340	22	2.5	22	82	5	69	16	17	3	62	1.46
44753800--44753932	11	12.9	11	68	21	74	60	0	2	37	1.10
44753800--44753860	31	2.0	31	90	6	97	57	0	1	40	1.08
44753824--44753985	40	4.0	40	91	4	254	63	0	3	33	1.10
44761129--44761165	18	2.1	18	89	0	56	54	0	2	43	1.14
44770972--44771015	23	2.0	23	86	4	63	52	0	2	45	1.13
44773699--44773738	17	2.3	18	95	4	73	35	2	10	52	1.48
44773797--44773878	41	2.0	41	90	0	128	46	14	10	28	1.78
44789764--44789822	28	2.1	28	100	0	118	50	3	10	35	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44795173--44795234	23	2.7	23	85	5	81	22	20	17	38	1.93
44800392--44800438	24	1.9	25	86	4	69	74	2	6	17	1.12
44800381--44800447	26	2.6	25	76	9	73	70	1	8	19	1.22
44800543--44800598	26	2.2	26	90	0	85	57	3	0	39	1.16
44800545--44800625	30	2.8	29	78	9	85	59	2	0	38	1.11
44800562--44800624	32	1.9	33	84	9	85	63	1	0	34	1.04
44804062--44804089	14	2.0	14	100	0	56	78	0	0	21	0.75
44806444--44806553	22	4.7	23	70	9	80	12	17	26	43	1.85
44806419--44806551	25	5.6	25	68	13	91	12	15	25	45	1.82
44806419--44806559	47	3.0	47	89	0	210	13	15	24	46	1.82
44818034--44818062	14	2.1	14	100	0	58	51	13	6	27	1.66
44831820--44831912	24	4.5	21	72	16	61	55	5	2	36	1.35
44831833--44831883	27	1.9	26	84	4	66	54	5	0	39	1.24
44834659--44834746	36	2.4	36	92	3	142	47	5	0	46	1.26
44834655--44834748	8	10.9	8	68	15	53	46	5	0	47	1.25
44834638--44834745	9	11.9	9	66	13	60	47	4	0	48	1.22
44840074--44840122	13	3.8	13	76	10	55	42	0	12	44	1.41
44844759--44844811	27	2.0	25	82	7	61	37	0	16	45	1.48
44854751--44854808	24	2.4	24	91	0	89	32	17	32	17	1.93
44861359--44861424	29	2.3	29	80	14	82	19	3	30	46	1.65
44861359--44861424	31	2.2	29	89	5	96	19	3	30	46	1.65
44862280--44862329	26	1.9	26	87	0	73	20	16	8	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44863104--44863273	27	6.3	26	77	13	150	45	14	15	24	1.84
44863104--44863273	54	3.2	53	80	8	200	45	14	15	24	1.84
44863104--44863273	81	2.1	81	86	4	236	45	14	15	24	1.84
44864089--44864127	20	2.0	20	89	0	60	46	10	17	25	1.80
44870781--44871058	27	10.3	27	82	5	321	43	18	16	22	1.88
44871236--44871307	26	2.8	26	82	0	81	16	22	23	37	1.94
44871961--44872000	20	2.0	20	95	0	71	45	15	12	27	1.82
44875996--44876057	20	2.9	20	75	18	54	29	4	4	61	1.37
44879669--44879725	28	2.0	28	93	0	96	22	12	17	47	1.81
44880709--44880748	20	2.0	20	90	0	62	50	12	12	25	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182