genome.fa.s21.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  33  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10712863--10712990	61	2.2	57	86	8	175	39	4	3	52	1.38
10718444--10719019	47	12.4	47	81	10	559	32	11	27	28	1.91
10718444--10719019	94	6.2	94	82	9	691	32	11	27	28	1.91
10718731--10718792	32	1.9	32	93	0	106	27	12	27	32	1.93
10718637--10719019	128	2.9	127	85	8	446	31	10	28	28	1.91
10718684--10718838	81	1.9	81	90	0	247	30	10	27	30	1.91
10718590--10718936	177	2.0	173	91	2	568	31	11	27	29	1.91
10719138--10719216	37	2.1	37	88	0	113	24	17	31	26	1.97
10727858--10728292	47	9.3	47	99	0	852	31	11	25	30	1.92
10728363--10728433	37	1.9	37	88	0	106	23	19	29	26	1.98
10737310--10737774	126	3.7	124	82	4	549	31	17	21	30	1.96
10740751--10741840	22	50.0	22	83	6	1195	23	0	30	45	1.57
10740751--10741811	43	24.5	43	78	9	912	23	0	30	45	1.57
10741680--10741757	28	2.8	28	86	5	77	21	0	34	43	1.53
10741709--10741762	14	3.8	14	78	11	65	16	0	37	46	1.48
10741707--10741768	28	2.2	28	94	0	106	17	0	37	45	1.49
10741780--10741832	27	2.0	27	88	0	79	18	0	39	41	1.51
10741599--10741840	71	3.5	70	79	10	264	22	0	30	46	1.52
10742362--10742404	18	2.4	18	84	0	59	46	9	27	16	1.77
10743003--10743035	7	4.7	7	92	0	57	57	12	0	30	1.35
10744134--10744167	17	1.9	17	94	5	59	67	0	0	32	0.91
10744234--10744280	22	2.0	25	88	12	73	38	0	31	29	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10745227--10745264	17	2.2	18	86	9	53	44	0	15	39	1.47
10745487--10745674	41	4.6	41	79	2	180	23	31	13	30	1.93
10745527--10745594	21	3.3	21	68	4	57	20	32	16	30	1.94
10746593--10746681	42	2.1	42	85	0	115	22	17	31	28	1.97
10748074--10748142	35	2.0	35	94	0	120	34	18	18	27	1.95
10751813--10751923	53	2.1	53	85	6	145	27	15	24	32	1.95
10761013--10761042	15	2.0	15	93	0	51	73	10	6	10	1.25
10764825--10764883	30	2.0	30	96	0	109	16	20	18	44	1.87
10767954--10768029	37	2.1	36	83	11	93	53	3	2	39	1.33
10770177--10770223	20	2.3	20	85	7	60	23	25	0	51	1.49
10771137--10771257	48	2.6	46	83	6	154	17	20	10	51	1.75
10771222--10771419	45	4.4	45	78	8	154	26	20	15	37	1.92
10771222--10771476	90	2.8	90	82	3	255	26	19	16	38	1.92
10771261--10771476	45	4.8	45	81	2	238	27	19	16	36	1.94
10771222--10771520	135	2.2	135	76	8	295	25	19	17	38	1.93
10792567--10792702	37	3.7	36	75	17	118	35	13	16	34	1.88
10797302--10797689	40	9.7	40	97	0	704	22	26	20	31	1.98
10809217--10809247	15	2.1	15	100	0	62	41	12	6	38	1.69
10811366--10811575	105	2.0	105	98	0	402	42	20	18	18	1.89
10833580--10833782	44	4.7	44	72	10	157	33	19	18	28	1.96
10833573--10833856	129	2.2	129	94	0	505	33	19	18	28	1.96
10833575--10833807	44	5.4	44	70	8	145	33	19	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10837648--10837697	20	2.4	21	78	21	61	50	4	12	34	1.58
10852689--10852724	17	2.1	17	94	0	63	22	11	5	61	1.50
10859905--10860169	40	6.7	40	87	6	369	24	22	27	25	2.00
10859905--10860176	119	2.3	119	87	4	361	24	22	27	25	1.99
10859906--10860202	159	1.9	159	83	6	388	25	21	27	25	2.00
10877976--10878161	96	1.9	96	79	8	209	29	29	20	20	1.98
10899555--10899584	14	2.1	14	93	0	51	40	0	43	16	1.48
10903016--10903055	17	2.3	18	87	12	57	60	0	5	35	1.19
10910660--10910689	14	2.1	14	93	0	51	40	0	43	16	1.48
10917090--10917132	14	3.1	14	87	12	54	9	4	9	76	1.14
10917094--10917142	17	2.8	17	87	3	62	12	2	8	77	1.07
10917095--10917136	14	3.1	14	90	10	61	11	2	7	78	1.04
10921229--10921269	4	9.8	4	84	10	55	51	2	0	46	1.14
10921229--10921269	9	4.9	8	90	3	55	51	2	0	46	1.14
10922620--10922663	22	2.0	22	100	0	88	31	27	9	31	1.88
10923974--10924014	16	2.5	17	81	18	52	60	0	7	31	1.24
10938426--10938465	21	1.9	21	84	0	53	15	12	2	70	1.28
10943563--10943610	3	16.0	3	100	0	96	33	0	0	66	0.92
10944100--10944124	1	25.0	1	100	0	50	0	100	0	0	0.00
10945777--10945836	31	1.9	31	86	6	86	61	0	3	35	1.12
10946480--10946504	11	2.3	11	100	0	50	60	24	8	8	1.52
10947480--10947591	44	2.5	44	84	2	136	31	20	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10947770--10948044	50	5.5	50	63	2	158	26	22	20	30	1.98
10947729--10948094	100	3.7	100	88	2	529	26	23	20	29	1.99
10956372--10956408	19	1.9	19	89	10	58	70	2	2	24	1.14
10956517--10956765	100	2.5	99	88	3	274	54	5	9	30	1.56
10956558--10956765	100	2.1	98	96	2	382	53	6	9	31	1.57
10956892--10956951	31	1.9	31	86	6	86	61	0	3	35	1.12
10957595--10957619	11	2.3	11	100	0	50	60	24	8	8	1.52
10958845--10958891	23	2.0	23	91	0	76	61	6	2	29	1.32
10958850--10958922	35	2.2	35	83	9	91	57	5	2	34	1.36
10960108--10960170	33	1.9	32	83	3	81	12	9	31	46	1.74
10960546--10960762	45	4.8	44	80	5	247	24	26	20	28	1.99
10960546--10960935	89	4.4	89	75	11	345	26	25	20	28	1.99
10960685--10961020	173	1.9	174	85	1	469	27	23	20	28	1.99
10960546--10960935	45	8.8	44	72	12	223	26	25	20	28	1.99
10960770--10961015	44	5.7	43	70	13	157	28	23	19	28	1.98
10961031--10961424	98	4.0	99	86	2	497	27	23	20	29	1.99
10961031--10961377	49	7.0	49	67	3	185	27	23	19	29	1.98
10961031--10961424	197	2.0	198	84	2	515	27	23	20	29	1.99
10961687--10961838	44	3.5	44	68	14	125	27	25	23	24	2.00
10961631--10961872	88	2.8	88	87	2	335	26	24	20	28	1.99
10961687--10961838	43	3.5	44	70	7	139	27	25	23	24	2.00
10963079--10963126	7	7.0	7	81	13	64	14	16	0	68	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10963088--10963125	13	2.8	13	92	4	58	13	15	0	71	1.16
10965750--10965775	12	2.2	12	100	0	52	15	23	0	61	1.33
10969407--10969453	13	3.5	13	78	18	51	70	6	2	21	1.20
10969736--10969770	12	2.9	12	91	0	52	54	5	5	34	1.48
10969794--10969845	23	2.2	24	89	3	79	57	7	1	32	1.38
10969789--10969861	33	2.2	33	82	7	85	61	5	2	30	1.32
10969788--10969864	35	2.3	32	80	10	82	62	5	2	29	1.30
10969861--10969931	34	2.0	38	84	15	98	57	4	5	32	1.41
10979195--10979233	20	2.0	20	100	0	78	25	17	25	30	1.97
10981022--10981063	15	2.7	16	82	14	52	45	0	2	52	1.13
10981013--10981054	15	2.9	15	82	10	52	47	0	0	52	1.00
10981189--10981298	45	2.6	43	79	11	120	32	29	5	32	1.80
10981279--10981346	16	4.2	16	94	0	118	35	36	0	27	1.58
10991534--10991666	64	2.1	64	87	2	187	27	6	15	50	1.69
10992799--10992918	63	1.9	63	100	0	240	34	15	15	35	1.89
10992807--10992907	33	3.2	33	60	18	77	33	15	14	35	1.89
10993911--10993954	16	2.9	16	86	6	56	54	0	9	36	1.32
11008880--11008922	14	2.9	15	76	16	54	6	23	0	69	1.12
11009471--11009651	38	4.8	38	85	5	179	30	19	20	29	1.97
11010260--11010295	19	1.9	19	88	5	56	22	5	19	52	1.66
11016160--11016256	38	2.6	37	83	4	122	26	11	19	42	1.85
11016356--11016393	16	2.4	16	100	0	76	36	0	34	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11016430--11016569	44	3.1	44	70	20	144	47	2	2	46	1.32
11016441--11016508	18	3.8	18	79	16	70	52	1	2	42	1.25
11016404--11016594	91	2.1	91	99	0	373	47	3	3	46	1.34
11016450--11016595	44	3.2	44	71	16	154	50	2	2	45	1.28
11017590--11017625	17	2.1	17	100	0	72	41	16	0	41	1.48
11021006--11021076	32	2.2	32	87	0	97	45	11	11	32	1.75
11022758--11022800	1	43.0	1	80	0	50	0	9	0	90	0.45
11022747--11022799	11	5.5	10	80	17	51	0	11	1	86	0.64
11022758--11022800	15	2.8	16	82	7	61	0	9	0	90	0.45
11022758--11022798	12	3.4	12	93	6	66	0	9	0	90	0.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182