genome.fa.s21.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  148  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45540661--45540702	12	3.7	12	90	9	54	11	0	19	69	1.19
45545845--45545935	45	2.0	45	93	0	155	17	30	21	29	1.96
45548805--45548829	12	2.1	12	100	0	50	24	8	28	40	1.83
45552359--45552414	21	2.7	21	86	5	78	35	7	35	21	1.81
45552377--45552421	21	2.1	21	83	0	54	44	6	33	15	1.73
45552851--45552886	19	1.9	18	94	5	63	22	11	5	61	1.50
45557676--45557719	21	2.0	23	87	12	67	43	0	0	56	0.99
45564209--45564252	23	1.9	23	85	0	61	6	22	27	43	1.78
45571938--45572010	35	2.1	35	84	5	94	23	13	15	47	1.80
45577447--45577480	16	2.1	17	94	5	61	32	0	17	50	1.47
45577449--45577486	17	2.2	17	86	9	51	34	0	21	44	1.52
45583505--45583766	85	3.1	85	94	0	454	27	16	20	36	1.93
45584252--45584330	39	2.0	40	82	2	97	32	1	22	43	1.62
45590908--45591045	40	3.5	39	82	4	177	33	18	21	27	1.96
45591481--45591677	14	13.8	14	70	13	80	23	1	32	43	1.61
45591535--45591572	15	2.6	15	87	4	60	18	0	39	42	1.50
45591486--45591677	7	26.9	7	70	15	63	22	1	33	42	1.61
45596420--45596578	43	3.7	43	85	5	198	28	16	23	30	1.96
45596422--45596602	86	2.1	83	77	7	184	29	17	22	29	1.97
45599153--45599249	29	3.3	29	81	8	106	49	1	9	40	1.42
45601020--45601150	49	2.7	49	95	0	226	29	20	19	30	1.97
45612764--45612789	5	5.2	5	100	0	52	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45613365--45613429	33	2.0	34	84	6	89	47	1	9	41	1.45
45614988--45615113	66	2.0	63	84	7	166	30	6	6	57	1.49
45615453--45615482	8	3.8	8	100	0	60	53	0	0	46	1.00
45615477--45615560	32	2.7	30	87	3	114	55	1	0	42	1.07
45615478--45615561	15	5.5	15	69	10	62	55	1	0	42	1.07
45616741--45616785	21	2.1	22	84	12	58	31	31	2	35	1.70
45616962--45617003	22	1.9	22	90	9	68	35	21	4	38	1.75
45619408--45619460	25	2.2	24	83	10	63	49	1	0	49	1.12
45628566--45628662	35	2.8	35	87	0	131	41	27	13	17	1.87
45629503--45629712	106	2.0	106	88	0	312	38	12	18	30	1.87
45631277--45631322	24	2.0	23	82	4	56	41	19	4	34	1.71
45631706--45631752	24	2.0	24	91	0	76	27	14	27	29	1.96
45633100--45633163	31	2.0	32	84	3	85	35	14	18	31	1.91
45637895--45637943	23	2.2	21	82	7	53	44	6	26	22	1.76
45639837--45639909	34	2.1	34	87	0	101	24	16	15	43	1.86
45641922--45641972	23	2.2	23	92	0	84	19	13	35	31	1.91
45647423--45647546	54	2.3	54	85	2	160	20	26	26	26	1.99
45653720--45653870	27	5.6	26	80	4	115	26	16	28	28	1.97
45653720--45653845	54	2.3	54	82	8	148	26	16	28	28	1.97
45653747--45653896	55	2.8	54	81	6	160	27	15	30	27	1.96
45653720--45653875	82	1.9	81	81	3	188	26	16	28	28	1.96
45653747--45653896	27	5.5	27	81	3	113	27	15	30	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45661049--45661075	13	2.1	13	100	0	54	40	14	14	29	1.86
45661622--45661799	27	6.6	27	83	3	205	26	15	28	29	1.96
45661623--45661778	82	1.9	81	88	3	233	26	15	28	29	1.96
45661619--45661799	82	2.2	81	83	2	229	27	15	27	29	1.96
45661704--45661810	27	3.9	27	85	1	70	26	14	28	30	1.95
45668236--45668295	25	2.4	25	86	5	86	8	16	26	48	1.75
45686002--45686189	29	6.4	29	86	3	234	40	11	28	19	1.86
45685990--45686200	87	2.4	87	82	4	255	40	13	26	19	1.89
45695662--45695773	56	2.0	56	98	0	215	41	7	25	25	1.80
45698612--45698636	2	12.5	2	100	0	50	48	0	0	52	1.00
45701039--45701071	16	2.1	16	100	0	66	30	33	18	18	1.94
45703474--45703513	13	3.0	13	89	10	55	2	7	0	90	0.55
45703471--45703504	15	2.1	17	89	10	54	0	11	0	88	0.52
45703471--45703508	8	4.9	8	93	6	53	0	10	0	89	0.49
45704890--45705196	76	4.0	76	98	0	587	32	6	16	43	1.74
45711684--45711714	12	2.6	12	94	0	53	0	25	0	74	0.82
45714102--45714149	23	2.1	23	100	0	96	25	18	25	31	1.98
45714157--45714328	40	4.3	40	88	2	213	26	27	21	25	1.99
45714159--45714381	40	5.6	39	83	5	207	26	26	21	25	1.99
45714157--45714381	80	2.8	79	80	7	231	26	27	21	25	1.99
45714311--45714390	40	2.0	41	82	9	101	27	27	20	25	1.99
45722112--45722260	40	3.8	40	85	6	180	23	27	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45722118--45722262	39	3.7	40	88	4	190	25	26	22	24	2.00
45722238--45722286	23	2.2	22	96	3	89	22	28	26	22	1.99
45743565--45743682	44	2.7	44	81	6	141	48	5	22	24	1.70
45743565--45743669	43	2.4	44	85	4	133	53	3	20	21	1.62
45744138--45744165	12	2.3	12	100	0	56	7	42	28	21	1.79
45750180--45750204	9	2.8	9	100	0	50	32	24	0	44	1.54
45760857--45760974	59	2.0	59	94	0	209	29	13	16	39	1.87
45764253--45764363	22	5.0	22	72	12	102	28	20	18	32	1.96
45764253--45764373	44	2.8	44	71	9	120	28	21	19	31	1.97
45764370--45764409	15	2.7	15	85	11	55	37	35	12	15	1.85
45769845--45769900	28	2.3	22	70	30	58	28	25	23	23	1.99
45770009--45770063	26	2.1	26	86	0	74	38	21	18	21	1.94
45772840--45772864	10	2.5	10	100	0	50	52	12	0	36	1.39
45775205--45775245	19	2.1	20	86	4	57	29	2	0	68	1.03
45775789--45775826	18	2.1	18	100	0	76	10	15	26	47	1.78
45784973--45785011	7	5.6	7	100	0	78	0	25	0	74	0.82
45785438--45785471	12	3.0	11	87	8	50	14	0	5	79	0.91
45801914--45802036	44	2.8	44	75	0	102	32	16	17	33	1.93
45802023--45802166	44	3.1	44	70	16	121	27	21	17	33	1.96
45802008--45802264	94	2.7	93	82	5	302	28	21	17	32	1.96
45802000--45802308	94	3.3	93	78	7	243	28	22	17	31	1.97
45808229--45808299	28	2.5	28	86	6	99	32	12	29	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45809245--45809423	25	7.6	24	72	18	144	26	11	15	45	1.81
45809232--45809443	47	4.5	47	87	2	257	28	12	15	43	1.83
45821559--45821596	3	12.7	3	94	0	67	0	28	0	71	0.87
45827555--45827588	3	11.3	3	100	0	68	32	0	0	67	0.91
45838010--45838038	1	29.0	1	100	0	58	0	0	0	100	0.00
45849182--45849215	3	11.3	3	100	0	68	67	0	0	32	0.91
45855174--45855211	3	12.7	3	94	0	67	71	0	28	0	0.87
45863043--45863090	24	2.0	25	83	4	62	50	0	0	50	1.00
45875626--45875667	18	2.2	20	87	8	61	52	16	7	23	1.68
45880584--45880689	49	2.1	51	80	13	123	37	19	25	16	1.93
45880521--45880696	25	7.1	25	73	15	116	35	19	26	18	1.95
45883535--45883573	18	2.2	17	86	13	53	35	0	20	43	1.52
45883799--45883874	23	3.3	23	86	0	107	22	19	23	34	1.97
45890382--45890434	18	2.9	17	78	10	61	41	1	16	39	1.60
45896271--45896307	19	2.1	19	85	10	51	35	5	13	45	1.66
45897355--45897383	6	4.8	6	100	0	58	34	17	17	31	1.93
45903222--45903278	28	2.0	28	89	0	87	38	14	5	42	1.68
45903411--45903609	101	2.0	101	89	0	308	29	23	16	30	1.96
45903417--45903577	33	4.8	33	69	7	83	30	22	15	31	1.95
45910879--45911073	73	2.7	74	84	3	252	36	11	11	40	1.78
45910879--45911073	72	2.7	72	85	3	248	36	11	11	40	1.78
45917376--45917522	33	4.4	32	67	9	105	27	24	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45917350--45917589	101	2.4	101	88	1	356	29	24	14	32	1.94
45922296--45922468	83	2.1	83	84	4	231	39	10	5	43	1.63
45927711--45927751	13	3.1	14	86	6	50	21	7	24	46	1.77
45927808--45927859	25	2.0	26	85	3	70	25	1	21	51	1.57
45927925--45927965	21	2.0	21	85	0	55	19	0	31	48	1.49
45930054--45930093	12	3.3	12	85	0	53	27	5	12	55	1.58
45931247--45931288	22	1.9	22	95	0	75	47	14	0	38	1.44
45931275--45931423	9	17.7	9	68	21	92	44	18	0	37	1.50
45931331--45931359	14	2.1	14	93	6	51	41	17	0	41	1.49
45931465--45931625	15	10.1	15	67	23	89	45	13	3	37	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182