genome.fa.s21.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  43  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13607226--13607256	9	3.4	9	90	0	53	25	12	22	38	1.90
13615962--13615992	15	2.1	15	100	0	62	32	12	22	32	1.92
13617556--13617598	19	2.3	18	84	4	50	27	2	2	67	1.15
13617556--13617612	9	6.0	9	72	11	51	29	1	5	63	1.27
13617553--13617608	28	2.0	28	86	6	78	26	3	5	64	1.32
13617621--13617690	31	2.3	30	80	11	79	58	12	1	27	1.43
13617640--13617704	31	2.1	31	91	2	103	52	15	3	29	1.58
13618427--13618455	11	2.6	11	100	0	58	20	27	6	44	1.77
13618462--13618506	12	3.8	12	82	5	56	42	0	0	57	0.98
13619609--13619633	7	3.6	7	100	0	50	28	0	12	60	1.32
13620744--13620790	25	1.9	24	95	4	85	44	0	14	40	1.46
13620948--13621070	45	3.1	38	80	16	158	52	21	0	26	1.47
13621173--13621241	30	2.3	30	92	0	120	47	24	0	27	1.52
13620833--13622101	115	11.2	115	85	9	1591	47	25	0	26	1.56
13621942--13621981	18	2.2	18	100	0	80	52	22	0	25	1.47
13620833--13621995	23	51.2	23	73	18	752	47	25	0	26	1.56
13622014--13622104	23	4.0	22	77	14	105	48	23	0	28	1.51
13622098--13622457	116	3.1	116	97	0	659	40	9	7	43	1.64
13622213--13622404	61	3.2	61	65	16	177	40	9	8	41	1.68
13622274--13622457	55	3.2	55	64	17	149	41	9	5	43	1.59
13625468--13625839	124	3.0	124	88	2	550	32	21	16	29	1.95
13672098--13672187	40	2.2	40	94	0	153	20	30	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13672116--13672181	20	3.3	20	64	8	53	13	33	21	31	1.92
13685189--13685239	23	2.2	23	89	0	75	43	21	7	27	1.80
13687965--13688100	50	2.6	54	81	9	165	25	19	30	24	1.98
13714289--13714367	21	3.7	21	88	6	97	43	13	7	35	1.73
13714812--13714924	44	2.6	44	84	2	138	30	18	21	30	1.97
13715378--13715678	88	3.4	88	87	1	433	21	23	26	27	1.99
13715398--13715629	44	5.3	43	63	12	105	23	25	25	25	2.00
13716758--13716838	42	1.9	42	85	5	110	28	28	13	29	1.94
13720707--13720734	14	2.0	14	100	0	56	71	7	0	21	1.09
13720871--13720921	27	2.0	26	88	7	77	58	5	1	33	1.33
13721057--13721091	17	2.1	17	89	10	54	54	0	11	34	1.37
13721266--13721295	7	4.4	7	95	4	53	70	0	0	30	0.88
13721566--13721663	21	4.7	21	87	8	121	41	14	8	35	1.75
13724843--13724887	18	2.5	17	82	10	54	31	2	2	64	1.18
13727283--13727467	32	5.8	32	85	2	255	37	20	19	22	1.94
13727286--13727467	64	2.8	64	88	1	285	37	20	19	22	1.94
13727268--13727465	96	2.1	95	87	2	281	38	19	19	22	1.93
13727473--13727526	26	2.1	26	92	0	90	38	25	18	16	1.92
13727642--13727749	24	4.5	24	78	0	90	44	18	8	28	1.79
13738555--13738652	27	3.5	28	90	2	135	26	13	28	31	1.94
13738583--13738665	27	3.0	27	87	5	96	30	12	25	32	1.92
13738555--13738666	28	4.0	27	83	6	98	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13739809--13739933	65	1.9	65	93	3	216	29	15	16	38	1.90
13753359--13753396	20	1.9	20	88	0	58	52	0	10	36	1.36
13754253--13754331	41	2.0	40	82	2	95	43	7	21	27	1.80
13761928--13761961	17	1.9	18	88	5	52	38	8	17	35	1.81
13767755--13767782	10	2.8	10	100	0	56	10	10	0	78	0.96
13772536--13772625	46	2.0	44	85	8	119	33	26	16	23	1.96
13772625--13772824	51	3.9	51	78	8	228	30	28	16	25	1.97
13772625--13772813	102	1.9	102	86	3	265	30	27	16	24	1.97
13778362--13778434	23	3.2	23	92	0	119	26	20	26	27	1.99
13785586--13785651	26	2.7	24	81	9	78	40	12	15	31	1.83
13785568--13785655	24	3.7	24	79	8	90	38	14	14	31	1.87
13788288--13788332	18	2.5	17	86	10	63	31	0	2	66	1.04
13798008--13798062	28	2.0	28	88	0	83	43	20	12	23	1.86
13801079--13801219	39	3.6	39	81	1	149	29	4	20	44	1.72
13805752--13805776	13	1.9	13	100	0	50	24	24	36	16	1.94
13816488--13816523	3	12.0	3	100	0	72	66	0	0	33	0.92
13819796--13820001	43	4.8	43	94	0	358	29	33	17	19	1.95
13820197--13820256	18	3.4	18	64	13	52	40	10	6	43	1.64
13825277--13825301	13	1.9	13	100	0	50	32	8	4	56	1.47
13825764--13825827	21	3.0	21	81	6	67	34	40	0	25	1.56
13825909--13825938	7	4.3	7	100	0	60	26	60	0	13	1.34
13826347--13826376	7	4.3	7	95	0	51	36	0	30	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13826560--13827008	41	11.0	41	89	0	657	27	26	24	21	1.99
13828395--13828419	12	2.1	12	100	0	50	28	32	8	32	1.86
13830551--13830624	23	3.2	23	86	0	76	44	24	4	27	1.71
13830610--13830639	7	4.3	7	100	0	60	46	40	0	13	1.43
13831015--13831141	23	5.3	23	71	12	94	44	25	1	28	1.63
13831064--13831103	18	2.2	18	86	0	53	47	22	0	30	1.52
13829595--13831103	28	53.0	28	87	8	2011	46	22	0	29	1.58
13831321--13831379	27	2.2	27	100	0	118	37	6	13	42	1.71
13834374--13834615	125	1.9	124	85	5	337	33	23	14	28	1.94
13834931--13834991	28	2.2	28	82	11	72	42	18	13	26	1.86
13837116--13837824	357	2.0	358	95	1	1271	36	16	10	36	1.83
13849325--13849494	87	1.9	90	91	3	283	20	11	11	57	1.63
13859165--13859253	43	2.1	43	86	0	124	46	2	23	28	1.64
13859358--13859480	50	2.7	44	78	14	147	37	3	20	39	1.69
13859358--13859505	50	3.1	49	75	21	113	36	3	20	39	1.70
13859646--13859693	10	4.6	10	82	10	60	50	6	2	41	1.39
13859656--13859702	22	2.1	23	96	4	87	53	4	2	40	1.32
13859645--13859710	32	2.1	32	88	5	98	53	4	3	39	1.37
13860034--13860064	3	10.3	3	100	0	62	35	0	0	64	0.94
13861768--13861991	112	2.0	112	98	0	430	31	15	6	46	1.72
13862260--13862529	135	2.0	135	97	0	513	33	19	13	32	1.91
13863618--13863723	21	5.0	21	69	0	77	42	17	24	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13863576--13863732	42	3.8	41	79	3	143	45	16	23	14	1.84
13870466--13870678	106	2.0	106	96	1	392	41	15	3	39	1.65
13875818--13875850	3	11.0	3	100	0	66	66	0	0	33	0.92
13878994--13879028	3	11.7	3	93	0	61	71	28	0	0	0.86
13882675--13882706	16	1.9	17	93	6	57	37	21	0	40	1.54
13882867--13882983	41	2.8	42	80	8	139	31	28	17	23	1.96
13889881--13889912	16	1.9	17	93	6	57	37	21	0	40	1.54
13890073--13890189	41	2.8	42	80	8	139	31	28	17	23	1.96
13912227--13912332	21	5.0	21	69	0	77	42	17	24	15	1.88
13912185--13912341	42	3.8	41	77	3	134	45	16	22	14	1.84
13913324--13913358	3	11.7	3	93	0	52	62	31	5	0	1.18
13917851--13917947	49	2.0	49	95	0	176	40	17	5	37	1.72
13919071--13919188	59	2.0	59	98	0	227	28	26	13	31	1.94
13919461--13919492	16	1.9	17	93	6	57	37	18	0	43	1.51
13919653--13919808	84	1.9	84	86	8	228	29	29	19	21	1.98
13919653--13919809	43	3.7	42	78	16	180	29	29	19	21	1.98
13937883--13937916	17	1.9	17	88	5	50	50	5	0	44	1.26
13938632--13938673	12	3.3	13	81	15	52	66	0	2	30	1.04
13943935--13944334	188	2.1	191	82	8	483	24	11	19	44	1.83
13955541--13955596	29	2.0	28	86	10	78	35	0	14	50	1.43
13961105--13961134	12	2.5	12	88	0	51	30	0	20	50	1.49
13963747--13963842	46	2.1	46	90	3	149	47	4	16	31	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13974212--13974266	28	2.0	28	100	0	110	25	20	29	25	1.99
13981567--13981598	16	1.9	17	93	6	57	40	0	0	59	0.97
13981568--13981605	16	2.4	16	86	8	51	47	0	0	52	1.00
13982535--13982587	24	2.3	25	78	15	60	45	0	3	50	1.19
13983938--13983994	12	4.2	13	75	18	53	21	0	3	75	0.95
13990336--13990368	8	4.2	8	92	3	50	0	18	0	81	0.68
13990483--13990554	29	2.4	29	81	2	81	40	18	8	33	1.80
13993166--13993204	19	2.0	20	85	14	55	41	0	5	53	1.23
13994609--13994670	32	1.9	32	90	0	97	59	0	0	40	0.97
13996133--13996179	25	2.0	25	83	8	62	27	14	4	53	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182