genome.fa.s21.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  114  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34769863--34770046	40	4.6	40	83	9	216	23	22	28	25	2.00
34769915--34770079	79	2.1	79	84	6	210	25	21	27	25	1.99
34777819--34778043	40	5.6	40	86	6	278	25	21	26	27	1.99
34781363--34781399	18	2.1	18	89	0	56	24	35	13	27	1.93
34783060--34783106	22	2.1	22	88	7	69	23	48	2	25	1.62
34786097--34786170	37	2.1	34	82	9	87	21	10	12	55	1.67
34787106--34787195	29	3.1	29	95	0	153	48	0	1	50	1.08
34787330--34787390	29	2.1	29	90	0	95	47	3	0	49	1.18
34787135--34787508	195	1.9	195	96	0	694	34	10	4	50	1.58
34787508--34787543	9	4.0	9	88	0	54	44	22	0	33	1.53
34792940--34792974	14	2.6	14	90	4	54	37	2	14	45	1.59
34793681--34793892	85	2.5	85	83	5	266	26	15	25	32	1.95
34793681--34793908	43	5.3	43	74	8	196	27	14	25	32	1.95
34793913--34794055	43	3.3	43	80	1	171	29	13	24	32	1.94
34793913--34794080	43	3.9	43	81	3	153	28	16	23	32	1.96
34793910--34794082	86	2.0	86	83	4	215	27	16	24	31	1.96
34795763--34795875	29	4.0	28	86	2	127	26	15	30	27	1.96
34795776--34795886	57	1.9	57	83	1	141	26	16	29	27	1.97
34798715--34798764	26	1.9	26	95	0	91	34	16	22	28	1.95
34800855--34800897	14	3.0	14	84	15	61	2	20	4	72	1.14
34824061--34824322	39	6.7	40	87	7	337	25	22	27	24	2.00
34826284--34826361	40	2.0	40	89	0	120	32	20	14	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34831991--34832156	48	3.5	48	85	0	161	21	28	22	27	1.99
34833667--34833733	28	2.4	28	84	0	80	25	20	22	31	1.98
34834260--34834289	14	2.2	14	94	5	53	40	6	0	53	1.27
34834749--34834788	19	2.1	19	85	0	53	15	47	0	37	1.45
34834737--34834782	15	3.0	16	79	17	53	17	45	0	36	1.49
34838386--34838686	27	11.1	27	74	12	217	31	14	24	29	1.95
34838386--34838646	81	3.2	81	81	4	278	29	14	25	29	1.95
34840408--34840440	16	2.0	17	88	5	50	42	6	18	33	1.75
34849857--34849982	26	4.8	26	76	9	103	23	19	24	33	1.97
34849819--34849957	29	5.1	28	72	15	103	23	16	24	35	1.94
34849831--34849983	80	1.9	80	86	0	216	22	18	24	33	1.96
34860190--34860277	44	2.0	44	95	0	158	18	23	17	40	1.90
34862662--34862772	51	2.2	50	87	4	152	36	17	18	27	1.93
34862884--34862955	35	2.0	36	83	2	92	41	13	18	26	1.87
34864547--34864805	40	6.5	40	84	5	260	26	25	20	27	1.99
34864547--34864805	80	3.2	80	82	8	296	26	25	20	27	1.99
34864580--34864805	120	1.9	120	82	7	289	26	26	21	26	1.99
34867559--34867787	40	5.7	40	96	0	395	21	28	20	29	1.98
34871037--34871083	18	2.5	19	86	6	69	57	0	2	40	1.11
34871038--34871084	19	2.6	18	81	18	62	57	0	2	40	1.11
34871996--34872639	103	6.3	99	86	7	705	30	0	14	54	1.44
34871996--34872639	206	3.1	206	86	6	841	30	0	14	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34871996--34872639	309	2.1	305	85	6	865	30	0	14	54	1.44
34873099--34873170	29	2.4	31	81	9	85	63	1	1	33	1.11
34873140--34873211	23	3.6	21	75	19	73	62	0	1	36	1.04
34873124--34873242	41	3.0	39	77	15	127	63	0	1	35	1.05
34873145--34873191	23	2.1	23	92	4	78	65	0	2	31	1.04
34873170--34873232	17	3.8	17	73	25	55	61	0	1	36	1.05
34873177--34873239	31	2.1	30	85	5	83	66	0	1	31	1.01
34879433--34879816	127	3.1	126	91	2	576	28	15	22	33	1.95
34882982--34883032	7	7.4	7	88	2	68	19	1	41	37	1.63
34883018--34883825	29	28.2	29	85	5	1021	29	1	24	43	1.63
34883018--34883822	293	2.8	291	89	6	1179	30	1	24	43	1.63
34883537--34883882	28	13.5	24	71	20	192	28	3	22	45	1.68
34883788--34883891	23	5.2	18	72	21	57	29	0	22	47	1.58
34883836--34883896	19	3.0	19	83	9	59	31	3	18	47	1.64
34886155--34886186	9	3.4	9	95	4	55	62	0	0	37	0.95
34886188--34886361	87	2.0	87	98	0	339	46	1	14	37	1.52
34886347--34886388	22	1.9	22	90	0	66	33	0	33	33	1.58
34886390--34886466	22	3.5	22	87	1	111	38	1	27	32	1.65
34886730--34886788	29	2.1	28	80	3	64	50	11	8	28	1.68
34895523--34895741	121	1.8	121	97	0	420	26	23	11	37	1.90
34898975--34899132	43	3.7	43	79	7	151	30	25	18	24	1.98
34902118--34902194	38	2.0	38	87	0	109	35	20	10	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34905755--34905806	24	2.2	24	100	0	104	21	46	17	15	1.84
34907563--34907614	15	3.6	15	80	12	56	53	1	0	44	1.11
34907659--34907705	17	2.9	16	78	18	53	46	2	6	44	1.40
34907678--34907711	17	2.0	17	94	0	59	50	0	5	44	1.26
34907744--34907937	92	2.1	91	88	5	284	46	4	4	44	1.41
34910347--34910374	12	2.3	12	100	0	56	35	25	25	14	1.93
34911823--34911873	24	2.1	24	100	0	102	33	7	23	35	1.84
34914977--34915060	44	1.9	44	82	0	105	36	4	9	48	1.57
34915047--34915075	15	1.9	15	100	0	58	41	0	3	55	1.17
34927391--34927459	25	2.7	25	81	4	75	24	27	23	24	2.00
34935520--34935767	50	4.9	50	80	9	245	28	19	26	25	1.99
34953116--34953141	12	2.2	12	100	0	52	92	7	0	0	0.39
34965958--34967058	128	8.6	128	90	0	1610	25	24	18	30	1.98
34968085--34968117	13	2.5	14	85	14	52	15	12	0	72	1.12
34968085--34968117	6	5.0	7	85	14	52	15	12	0	72	1.12
34969044--34969101	6	9.7	6	79	7	55	10	6	13	68	1.37
34972398--34972459	31	2.0	31	100	0	124	41	16	9	32	1.80
34982424--34982466	23	1.9	22	85	4	59	34	6	0	58	1.25
34982424--34982466	22	1.9	23	85	4	61	34	6	0	58	1.25
34982587--34982642	10	5.4	10	76	16	51	30	7	0	62	1.22
34984864--34984891	3	9.3	3	100	0	56	32	0	0	67	0.91
34986343--34986377	18	2.0	18	88	5	54	25	11	2	60	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34986335--34986389	17	3.2	16	78	16	58	25	7	3	63	1.37
34992267--34992509	50	4.8	50	82	5	274	22	30	20	26	1.98
34992267--34992509	101	2.4	100	85	1	315	22	30	20	26	1.98
34995316--34995396	42	1.9	42	85	5	110	17	33	24	24	1.96
34995326--34995413	42	2.1	42	80	4	97	22	31	21	23	1.98
34996067--34996266	40	5.0	40	83	1	240	32	15	30	22	1.95
34996186--34996250	20	3.3	20	64	20	55	30	16	36	15	1.90
34996067--34996266	79	2.5	80	83	0	249	32	15	30	22	1.95
34999976--35000014	13	2.8	14	84	11	53	53	10	2	33	1.48
35000890--35000936	21	2.2	21	82	14	53	57	12	0	29	1.36
35001843--35001999	41	3.8	41	80	3	163	31	28	21	18	1.97
35005075--35005269	50	3.9	50	78	4	171	23	27	21	27	1.99
35012469--35012517	20	2.5	19	78	12	55	12	22	6	59	1.55
35026161--35026189	12	2.3	13	94	5	51	20	6	6	65	1.40
35045040--35045142	41	2.5	41	80	0	116	31	23	23	22	1.99
35047503--35047555	19	2.6	21	74	17	58	26	32	5	35	1.80
35064885--35064983	26	3.8	26	72	5	74	21	16	25	37	1.93
35064872--35064988	52	2.2	52	80	3	128	23	15	24	36	1.93
35078908--35078958	18	2.8	18	81	3	57	23	27	5	43	1.77
35078908--35078947	19	2.2	19	86	4	55	25	32	5	37	1.77
35085857--35085916	29	2.1	29	82	11	72	36	13	5	45	1.65
35091417--35091653	40	5.9	40	91	0	375	24	27	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35094542--35094647	43	2.5	43	87	3	144	26	28	16	28	1.97
35097722--35097747	9	2.9	9	100	0	52	23	0	23	53	1.46
35097931--35097970	18	2.2	18	86	8	55	35	0	35	30	1.58
35102510--35102540	11	2.8	11	95	0	53	54	0	3	41	1.16
35107872--35107974	44	2.4	44	85	3	129	41	5	1	50	1.37
35108000--35108024	7	3.6	7	100	0	50	28	16	12	44	1.83
35116481--35116538	30	1.9	30	86	6	82	48	12	8	31	1.70
35122217--35122268	16	3.2	16	75	5	52	15	17	3	63	1.45
35122558--35122664	50	2.1	50	80	0	124	20	29	22	27	1.98
35129003--35129470	40	11.7	40	99	0	927	30	20	27	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182