genome.fa.s21.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  143  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44030308--44030348	14	3.0	14	86	10	50	58	7	0	34	1.26
44030627--44030670	21	2.2	20	84	11	56	56	2	0	40	1.11
44030628--44030671	20	2.4	17	82	14	52	56	2	0	40	1.11
44038688--44038726	17	2.3	17	86	8	53	69	5	2	23	1.21
44039939--44039975	9	4.1	9	89	0	56	48	13	8	29	1.71
44044283--44044405	22	6.1	22	61	24	65	35	30	19	14	1.92
44044292--44044399	38	2.8	38	95	0	189	35	31	21	12	1.90
44053990--44054126	38	3.4	38	73	14	123	37	32	16	13	1.87
44054039--44054115	22	3.5	22	83	0	100	41	33	12	11	1.80
44054971--44055024	22	2.4	22	81	9	65	38	18	1	40	1.61
44055637--44055665	12	2.3	13	94	5	51	37	6	27	27	1.82
44059278--44059354	40	1.9	40	84	5	102	40	14	10	35	1.80
44069603--44069688	39	2.2	40	87	6	122	39	2	3	54	1.30
44071306--44071360	24	2.3	24	84	3	67	61	1	5	30	1.29
44071335--44071378	17	2.5	17	82	13	54	59	2	2	36	1.23
44076891--44076921	6	5.2	6	92	0	53	3	16	64	16	1.42
44076988--44077064	7	12.5	6	82	15	56	31	1	3	63	1.20
44079337--44079443	51	2.1	52	84	5	137	56	5	5	32	1.46
44079710--44079747	12	2.8	13	88	11	51	65	0	0	34	0.93
44079726--44079759	15	2.3	15	89	0	50	70	2	0	26	1.01
44079969--44080007	19	2.0	21	85	10	55	69	5	10	15	1.34
44080183--44080227	22	2.0	22	86	4	63	42	15	2	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44080217--44080279	21	3.1	21	86	9	103	36	14	11	38	1.81
44080206--44080280	19	3.8	19	86	6	105	37	14	10	37	1.81
44080662--44080815	44	3.6	44	74	7	120	27	20	22	29	1.98
44081122--44081497	44	8.7	44	78	11	384	28	25	18	28	1.98
44081168--44081497	170	1.9	170	85	2	457	28	24	18	28	1.98
44081128--44081457	126	2.6	126	88	3	464	27	24	18	28	1.98
44081487--44081898	88	4.7	88	88	0	563	19	23	29	26	1.98
44081662--44081801	44	3.2	44	66	8	113	17	22	34	26	1.95
44081511--44081902	176	2.2	176	91	0	622	19	23	28	27	1.99
44084092--44084144	25	2.2	25	86	10	74	62	5	11	20	1.49
44084092--44084159	25	2.7	23	82	11	55	60	5	11	22	1.52
44087377--44087481	51	2.0	51	81	5	122	55	6	6	31	1.52
44087748--44087787	3	13.3	3	84	10	55	67	0	0	32	0.91
44087750--44087801	12	4.1	12	81	16	52	69	1	0	28	0.99
44088009--44088047	19	2.0	21	85	10	55	69	5	10	15	1.34
44089478--44089523	19	2.3	20	81	7	58	67	0	6	26	1.15
44090962--44091013	24	2.2	24	89	0	77	55	9	1	32	1.43
44092932--44092983	24	2.2	24	89	0	77	55	9	1	32	1.43
44113317--44113575	7	36.6	7	70	7	69	20	2	32	44	1.65
44113500--44113572	22	3.3	22	81	11	87	21	5	38	34	1.77
44113756--44114120	116	3.2	116	84	1	473	24	12	21	41	1.87
44114224--44114345	23	5.3	23	76	11	124	18	38	1	40	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44114224--44114347	46	2.7	46	91	0	194	20	37	1	40	1.62
44114483--44114516	12	2.8	12	90	4	50	5	8	20	64	1.43
44115415--44115502	46	1.9	45	84	6	115	36	13	1	48	1.50
44115679--44115731	20	2.5	21	87	6	72	39	9	0	50	1.35
44115748--44115838	34	2.6	34	85	5	119	39	2	1	57	1.18
44115945--44115977	9	3.7	9	84	15	50	54	24	0	21	1.45
44116000--44116205	9	22.2	9	73	15	118	44	20	1	33	1.61
44115953--44116226	48	5.8	47	78	16	241	45	20	1	33	1.58
44116009--44116106	39	2.5	39	93	0	169	44	23	0	31	1.53
44115992--44116062	14	4.6	14	72	24	63	43	26	0	29	1.55
44116057--44116113	30	1.9	30	85	7	80	47	21	0	31	1.51
44116048--44116241	99	1.9	102	88	7	299	45	18	2	34	1.61
44115968--44116241	45	5.9	46	73	20	207	45	19	1	33	1.59
44127055--44127200	27	5.4	27	81	3	168	34	19	19	25	1.96
44130113--44130262	43	3.5	43	81	3	142	33	21	18	26	1.96
44131511--44131653	58	2.5	56	76	14	130	43	3	4	48	1.39
44131564--44131608	24	2.0	23	87	12	67	42	4	0	53	1.21
44133365--44133402	18	2.1	18	100	0	76	34	5	10	50	1.59
44133938--44133972	16	2.2	16	90	10	54	51	2	17	28	1.59
44134639--44134859	45	4.9	45	90	0	316	38	14	20	26	1.91
44134642--44134886	90	2.7	90	84	3	235	38	14	20	26	1.91
44136574--44136615	21	2.0	21	95	0	75	45	7	14	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44151456--44151499	22	2.0	22	81	0	52	40	18	22	18	1.91
44154638--44154699	26	2.4	26	88	0	88	40	9	14	35	1.79
44163092--44163159	25	2.7	26	84	6	88	36	7	25	30	1.83
44163590--44163714	62	2.0	62	93	0	214	23	16	17	43	1.88
44165820--44165997	27	6.6	27	84	3	205	29	28	15	26	1.96
44165841--44165996	82	1.9	81	88	3	233	29	28	15	26	1.96
44176079--44176114	11	3.2	11	84	7	54	33	0	2	63	1.08
44184244--44184296	14	3.7	13	81	16	52	66	1	1	30	1.13
44184244--44184294	16	3.4	14	77	17	50	66	1	1	29	1.13
44188053--44188079	13	2.1	13	100	0	54	33	7	22	37	1.82
44199613--44199672	31	1.9	31	100	0	120	60	6	3	30	1.39
44199671--44199699	13	2.1	14	93	6	51	55	6	0	37	1.27
44201720--44201751	6	5.3	6	100	0	64	34	0	0	65	0.93
44213708--44213789	26	3.2	26	85	3	112	17	20	17	45	1.86
44213714--44213918	24	8.3	24	65	16	73	19	21	19	39	1.93
44214687--44214715	8	3.6	8	100	0	58	48	10	13	27	1.75
44216243--44216311	27	2.6	27	83	4	77	20	30	15	33	1.94
44223603--44223652	24	2.1	23	88	3	73	58	10	16	16	1.63
44225873--44225898	13	2.0	13	100	0	52	53	0	0	46	1.00
44231058--44231237	28	6.6	27	89	3	270	30	28	13	28	1.94
44231058--44231237	55	3.3	55	94	1	299	30	28	13	28	1.94
44231058--44231237	83	2.2	82	90	1	279	30	28	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44232483--44232546	24	2.7	24	69	11	60	18	21	3	56	1.56
44234664--44234692	12	2.4	12	100	0	58	41	0	6	51	1.28
44243640--44243680	15	2.8	15	78	14	50	63	0	29	7	1.21
44257219--44257312	30	3.1	30	93	1	152	41	6	24	27	1.79
44260456--44260519	30	2.1	31	94	2	112	39	6	28	26	1.80
44260454--44260504	15	3.3	16	72	10	61	43	5	25	25	1.77
44263214--44263247	18	1.9	18	88	5	52	55	0	5	38	1.24
44264808--44265151	50	6.9	50	69	0	204	22	20	23	32	1.98
44264790--44265543	100	7.6	99	85	5	704	23	20	23	32	1.98
44265127--44265392	51	5.3	51	68	8	211	24	20	22	32	1.98
44264965--44265441	50	9.5	50	66	12	197	24	19	22	32	1.97
44266796--44266864	6	10.1	7	77	19	67	11	17	1	69	1.25
44266796--44266854	19	3.0	19	77	5	64	11	16	0	71	1.15
44266799--44266847	25	1.9	26	91	4	82	10	16	0	73	1.09
44266804--44266854	15	3.7	15	80	15	58	9	17	0	72	1.11
44268172--44268209	19	2.0	19	100	0	76	47	10	15	26	1.78
44268566--44268599	18	1.9	18	88	5	52	55	0	5	38	1.24
44271590--44271977	212	1.9	203	88	4	578	29	11	19	39	1.87
44275222--44275281	13	4.5	13	71	19	52	76	1	3	18	1.00
44286554--44286579	9	2.9	9	100	0	52	0	0	30	69	0.89
44296014--44296113	41	2.4	41	98	0	191	21	29	27	23	1.99
44296098--44296191	25	3.8	25	80	5	109	28	26	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44299190--44299229	19	2.1	19	85	0	53	37	2	5	55	1.35
44300533--44300652	61	2.0	61	86	3	170	39	3	6	50	1.45
44300604--44300649	15	2.9	17	75	18	53	41	2	0	56	1.11
44302585--44302639	26	2.1	26	93	0	92	34	21	21	21	1.97
44302798--44302889	27	3.4	27	89	0	112	20	14	22	42	1.88
44302802--44302972	54	3.2	54	77	0	153	19	16	21	42	1.89
44302831--44302972	27	5.3	27	84	0	140	18	16	21	44	1.87
44305491--44305645	69	2.2	69	94	0	265	23	22	17	36	1.95
44307604--44307984	90	4.3	90	79	4	285	29	19	14	36	1.91
44307722--44307958	90	2.6	89	84	2	312	27	18	14	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182