genome.fa.s21.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  46  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14446054--14446111	30	1.9	30	85	0	80	5	8	36	50	1.56
14446028--14446094	34	2.0	34	87	0	98	8	11	34	44	1.73
14451923--14451949	13	2.1	13	100	0	54	22	7	14	55	1.64
14451650--14452328	272	2.5	272	96	0	1232	25	16	20	38	1.93
14452195--14452219	13	1.9	13	100	0	50	28	8	8	56	1.57
14452855--14452893	18	2.2	18	100	0	78	43	0	10	46	1.37
14452860--14452899	18	2.2	18	90	0	62	50	0	10	40	1.36
14453261--14453337	14	5.0	15	71	20	52	42	15	9	32	1.78
14453277--14453316	20	2.0	20	90	0	62	50	12	10	27	1.72
14453265--14453331	34	1.9	35	90	3	109	46	13	8	31	1.74
14453300--14453339	14	2.9	14	84	0	53	42	17	7	32	1.77
14458502--14458551	19	2.6	19	90	9	75	34	2	4	60	1.27
14462788--14462816	15	1.9	15	100	0	58	41	6	13	37	1.72
14466330--14466556	42	5.5	42	83	5	241	28	23	18	29	1.98
14468329--14468354	13	2.0	13	100	0	52	46	7	0	46	1.31
14472975--14473032	30	1.9	30	89	0	89	41	5	24	29	1.76
14473375--14473562	50	3.7	50	89	0	286	25	23	30	21	1.99
14477585--14477616	16	2.0	16	100	0	64	43	18	18	18	1.88
14478833--14478892	29	2.0	30	84	9	79	43	6	23	26	1.78
14479231--14479418	50	3.7	50	86	0	268	25	22	29	21	1.99
14479753--14479803	22	2.3	22	100	0	102	45	5	3	45	1.46
14480630--14480654	13	1.9	13	100	0	50	48	12	16	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14487688--14487721	18	2.0	18	88	11	54	38	0	11	50	1.39
14504934--14505030	35	2.8	34	87	1	131	21	51	8	18	1.72
14504951--14505030	34	2.3	35	82	2	99	23	51	8	16	1.72
14505687--14505935	125	2.0	124	96	0	462	26	17	20	34	1.95
14508011--14508194	62	3.0	62	91	0	305	42	20	4	32	1.72
14509434--14509483	11	4.5	11	80	14	50	80	12	4	4	1.00
14510270--14510461	104	1.8	105	86	4	278	23	18	11	46	1.81
14510956--14511102	45	3.2	44	66	19	118	29	19	22	28	1.98
14510911--14511136	95	2.4	95	97	0	425	30	21	20	26	1.98
14510990--14511136	50	3.0	50	64	20	139	31	20	21	26	1.98
14526851--14526885	18	1.9	18	88	0	52	11	5	2	80	1.00
14545121--14545183	20	3.2	20	78	17	69	31	6	0	61	1.21
14551297--14551842	91	6.0	91	99	0	1083	40	4	20	34	1.73
14551920--14552024	47	2.2	47	79	0	129	40	6	14	39	1.72
14552114--14552365	126	2.0	126	99	0	495	25	14	27	32	1.94
14552291--14552371	41	2.0	41	95	0	144	18	18	30	32	1.95
14552294--14552404	41	2.7	41	87	0	141	18	19	28	33	1.95
14554807--14554873	28	2.4	28	94	0	116	26	22	26	23	2.00
14555258--14555374	27	4.3	27	82	6	130	17	18	19	44	1.87
14559617--14559751	40	3.4	39	74	8	121	31	24	17	26	1.97
14559636--14559750	37	2.9	40	73	8	110	34	21	14	28	1.93
14559910--14559956	24	2.0	24	84	16	62	51	14	0	34	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14560769--14560813	19	2.3	20	84	3	56	40	6	4	48	1.49
14560778--14560816	20	2.0	19	95	5	69	41	5	2	51	1.38
14561634--14561687	21	2.4	23	77	17	60	66	16	9	7	1.42
14568499--14568536	20	1.9	20	100	0	76	10	31	18	39	1.85
14569172--14569198	3	9.0	3	100	0	54	66	0	0	33	0.92
14570271--14570315	18	2.5	18	78	7	56	42	17	2	37	1.62
14570677--14570741	33	1.9	34	82	14	82	26	27	15	30	1.96
14592572--14592615	18	2.5	16	77	22	52	45	6	0	47	1.29
14594600--14594630	3	10.0	3	93	6	53	64	0	0	35	0.94
14595811--14595859	19	2.5	19	83	3	53	46	2	26	24	1.63
14596773--14596877	54	1.9	54	82	0	129	28	24	32	14	1.94
14597563--14597638	27	2.8	27	79	0	89	38	14	26	21	1.91
14608660--14608696	18	2.0	19	89	5	58	21	32	0	45	1.52
14609176--14609523	174	2.0	174	94	0	615	35	21	9	33	1.86
14610903--14610943	20	2.0	20	100	0	82	31	29	4	34	1.79
14611648--14611721	22	3.6	21	72	18	75	27	17	35	20	1.95
14611644--14611721	39	2.0	39	97	0	147	26	17	35	19	1.94
14615893--14615952	25	2.3	26	85	2	86	35	16	10	38	1.82
14617753--14617900	3	49.3	3	100	0	296	33	0	0	66	0.92
14618139--14618175	13	2.7	15	80	20	53	40	0	0	59	0.97
14618129--14618189	24	2.4	25	78	15	72	39	0	1	59	1.08
14618142--14618180	11	3.4	11	83	13	51	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14621049--14621132	25	3.4	25	73	6	80	25	21	29	23	1.99
14624482--14624562	29	2.7	30	84	5	101	44	14	9	30	1.78
14630582--14630618	11	3.4	11	92	7	58	81	0	18	0	0.70
14630590--14630627	11	3.8	10	86	10	51	78	0	21	0	0.74
14631870--14632077	44	4.7	44	87	2	285	26	15	25	31	1.96
14632441--14632939	44	11.5	43	68	15	190	30	21	22	26	1.99
14632569--14632947	45	8.7	44	70	12	167	30	20	22	26	1.98
14632426--14632913	217	2.2	217	86	2	669	29	20	23	26	1.99
14633458--14633520	19	3.3	19	90	0	108	38	7	15	38	1.77
14633458--14633558	19	4.7	22	83	11	106	37	7	15	38	1.77
14634210--14634237	14	2.0	14	100	0	56	71	0	0	28	0.86
14639528--14639712	40	4.7	40	83	5	205	23	20	27	28	1.99
14654171--14654244	25	3.0	25	83	0	94	20	22	20	36	1.95
14663262--14663286	13	1.9	13	100	0	50	24	40	8	28	1.83
14666848--14667241	102	3.9	101	83	7	417	29	16	26	28	1.97
14666848--14667232	51	7.7	49	79	8	330	29	16	26	28	1.97
14674504--14675560	50	21.1	50	94	1	1687	28	18	25	27	1.98
14675686--14675710	7	3.6	7	100	0	50	0	36	0	64	0.94
14678668--14678706	14	2.7	14	88	4	51	0	10	5	84	0.76
14684548--14684588	19	2.3	19	83	8	59	34	2	4	58	1.32
14695359--14695402	22	2.0	23	86	4	63	29	4	11	54	1.56
14706280--14706466	98	1.9	98	84	4	252	34	17	10	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14709259--14709396	51	2.7	51	77	0	168	41	13	6	39	1.70
14712064--14712196	51	2.6	51	78	0	149	41	12	6	39	1.69
14716311--14716355	19	2.4	19	88	0	63	40	31	6	22	1.80
14722882--14722984	29	3.6	29	70	0	98	38	18	23	19	1.93
14733567--14733595	5	5.8	5	100	0	58	20	0	62	17	1.33
14738417--14738543	6	21.7	6	68	23	60	44	3	1	50	1.30
14738417--14738543	11	10.8	12	65	26	60	44	3	1	50	1.30
14738417--14738551	68	2.0	69	92	1	227	43	3	2	49	1.35
14743575--14743616	22	1.9	22	100	0	84	23	21	19	35	1.96
14749495--14749524	15	2.0	15	100	0	60	53	6	20	20	1.67
14752099--14752228	68	1.9	68	87	3	190	40	3	3	51	1.38
14752177--14752216	21	2.0	20	85	5	53	47	2	0	50	1.14
14754632--14754747	61	2.0	59	84	5	146	50	4	2	43	1.36
14754799--14754823	12	2.1	12	100	0	50	52	0	0	48	1.00
14763166--14763219	17	3.4	16	73	23	51	61	1	0	37	1.07
14769153--14769199	20	2.2	22	85	7	62	57	2	8	31	1.41
14776828--14777020	98	2.0	95	87	3	278	32	20	17	29	1.95
14787887--14788116	114	2.0	114	94	1	408	31	24	12	32	1.92
14793840--14793910	33	2.2	33	100	0	142	26	2	25	45	1.67
14797435--14797921	242	2.0	242	97	0	911	30	22	13	32	1.93
14799393--14799432	14	2.9	14	84	0	53	32	7	17	42	1.77
14799416--14799455	20	2.0	20	90	0	62	27	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14799401--14799467	34	1.9	35	90	3	109	31	8	13	46	1.74
14799395--14799471	14	5.0	15	71	20	52	32	9	15	42	1.78
14802279--14802490	6	36.5	6	74	6	141	43	0	55	0	1.06
14802280--14802466	14	13.3	14	69	21	106	41	1	57	0	1.05
14802279--14802477	32	6.4	32	75	12	182	42	1	56	0	1.06
14802279--14802478	42	4.9	41	74	12	182	42	1	56	0	1.06
14802388--14802432	20	2.2	20	84	0	54	51	0	48	0	1.00
14802279--14802489	14	14.6	14	74	9	102	43	0	55	0	1.06
14804948--14805011	31	2.1	31	100	0	128	21	18	17	42	1.89
14805521--14805553	17	1.9	17	93	0	57	78	3	3	15	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182