genome.fa.s21.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  150  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46138017--46138078	31	2.0	31	100	0	124	12	16	22	48	1.80
46141137--46141163	5	5.4	5	100	0	54	59	0	0	40	0.98
46141218--46141446	43	5.3	43	84	3	282	22	17	30	30	1.97
46144803--46144844	22	2.0	20	90	9	66	76	2	4	16	1.07
46145504--46145949	40	10.8	40	81	8	396	23	21	22	32	1.98
46145504--46145953	128	3.6	124	83	9	515	23	22	22	32	1.98
46145504--46145953	84	5.4	84	83	8	566	23	22	22	32	1.98
46146075--46146212	44	3.2	44	67	19	135	28	23	23	23	2.00
46146119--46146255	42	3.2	43	67	18	122	25	21	27	26	1.99
46146047--46146272	86	2.6	87	97	0	418	24	23	24	26	2.00
46147316--46147370	11	4.8	12	77	18	55	1	14	1	81	0.85
46147314--46147371	29	2.0	28	84	15	75	1	17	1	79	0.90
46149172--46149350	62	2.9	62	96	0	322	31	2	24	42	1.67
46151940--46151989	22	2.3	22	75	6	57	58	0	8	34	1.28
46152719--46152761	22	2.0	21	90	4	68	76	2	4	16	1.05
46165043--46165076	12	2.8	12	86	0	50	44	0	8	47	1.34
46166681--46166889	44	4.8	44	71	11	185	25	24	19	30	1.98
46166559--46167095	132	4.1	132	93	0	833	27	23	18	30	1.97
46167077--46167450	46	8.1	46	94	0	604	28	27	16	27	1.97
46169247--46169310	26	2.5	26	82	7	94	0	25	1	73	0.92
46169248--46169314	14	4.8	14	71	10	57	0	26	1	71	0.94
46170723--46171151	214	2.0	214	100	0	858	35	14	10	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46185959--46186153	98	2.0	98	95	0	354	37	24	9	28	1.87
46187169--46187319	19	7.8	19	88	2	230	36	14	10	38	1.81
46187169--46187318	78	1.9	78	91	0	246	36	14	10	38	1.80
46187604--46187876	132	2.1	132	86	1	377	26	24	20	28	1.99
46187654--46187900	132	1.9	132	96	0	458	23	27	20	29	1.99
46189178--46189246	15	4.7	15	73	7	61	21	2	33	42	1.68
46189692--46189960	148	1.8	148	86	1	387	26	17	20	36	1.94
46189692--46190066	148	2.5	149	78	10	362	25	16	21	36	1.94
46190456--46190564	16	6.9	16	71	17	77	31	14	17	36	1.90
46190462--46190540	14	5.4	14	69	16	61	31	13	18	35	1.91
46192014--46192085	25	3.0	22	75	18	65	38	5	1	54	1.33
46192058--46192098	19	2.2	19	95	0	73	41	0	2	56	1.13
46192154--46192225	21	3.3	21	76	16	74	50	15	0	34	1.44
46192177--46192339	23	6.9	23	70	14	98	50	13	0	35	1.46
46192334--46192453	9	13.7	9	67	23	53	44	19	0	35	1.57
46192346--46192407	11	5.9	11	73	19	53	43	17	1	37	1.59
46192348--46192451	43	2.3	45	80	11	117	43	17	0	38	1.56
46192154--46192453	32	9.3	32	69	19	135	47	16	0	35	1.52
46192115--46192402	96	3.0	96	94	1	499	48	15	1	34	1.52
46192400--46192445	14	3.6	14	72	27	57	43	17	0	39	1.49
46192383--46192453	23	3.0	23	95	2	124	42	16	0	40	1.49
46199953--46199980	13	2.2	13	100	0	56	53	0	28	17	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46207106--46207195	27	3.3	26	78	7	92	38	22	22	16	1.93
46207118--46207199	27	3.0	27	84	7	105	39	21	23	15	1.92
46211077--46211181	8	12.1	8	67	18	50	20	4	2	72	1.16
46211102--46211199	19	5.4	17	69	14	54	22	5	4	68	1.27
46211131--46211200	27	2.6	26	78	14	79	21	4	4	70	1.23
46211086--46211221	73	1.9	69	91	8	220	22	5	2	69	1.21
46225648--46225709	13	4.5	13	73	16	54	22	11	9	56	1.63
46225689--46225771	25	3.4	24	78	9	78	27	14	8	49	1.72
46225652--46225776	12	9.9	12	68	13	63	26	14	8	51	1.70
46227956--46228027	21	3.2	23	69	11	76	47	2	1	48	1.25
46227956--46228043	45	2.0	45	86	0	122	50	3	1	45	1.26
46230133--46230246	39	2.9	39	88	1	156	30	4	21	43	1.72
46231116--46231182	30	2.2	30	94	2	116	25	8	19	46	1.79
46237996--46238070	21	3.6	21	81	0	78	14	24	18	42	1.88
46241427--46241458	16	2.0	16	93	0	55	28	12	25	34	1.92
46243634--46243691	25	2.4	24	77	5	62	18	22	18	39	1.92
46243806--46243946	73	1.9	73	81	8	171	19	24	21	34	1.97
46243880--46243984	49	2.1	49	80	3	113	18	26	22	32	1.97
46249270--46249454	79	2.3	82	84	7	238	25	27	22	24	2.00
46249251--46249454	40	5.1	40	82	8	238	25	27	22	25	2.00
46251984--46252421	4	109.5	4	89	1	520	42	27	3	26	1.71
46252822--46252881	21	3.0	21	82	4	70	43	18	23	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46264817--46264859	20	2.2	20	87	8	61	44	11	6	37	1.68
46270691--46270728	15	2.5	15	86	0	58	50	5	0	44	1.24
46271348--46271406	31	2.0	31	90	6	95	30	10	16	42	1.82
46271345--46271440	31	3.2	28	80	14	79	34	12	14	38	1.84
46271599--46271657	29	2.0	30	93	3	102	52	8	3	35	1.49
46272123--46272197	20	3.6	22	75	8	68	38	12	4	45	1.60
46272897--46272936	19	2.1	19	100	0	80	25	12	30	32	1.92
46276009--46276043	7	5.0	7	89	10	54	0	42	0	57	0.99
46277580--46277656	36	2.1	36	88	4	111	35	15	19	29	1.93
46278241--46278312	36	2.0	36	89	5	110	34	15	20	29	1.93
46278241--46278344	36	2.9	36	82	0	100	30	13	23	32	1.93
46278673--46278793	36	3.5	35	74	10	95	28	11	23	36	1.90
46282751--46282819	34	2.0	35	97	2	131	49	17	15	17	1.80
46304882--46304928	19	2.5	19	86	6	60	65	2	17	14	1.36
46309642--46310085	223	2.0	224	94	0	782	39	23	11	24	1.88
46310916--46310980	30	2.2	29	81	8	76	38	10	6	44	1.64
46310923--46310987	30	2.1	31	88	2	96	38	13	4	43	1.65
46311217--46311303	44	2.0	44	97	0	165	32	8	4	55	1.50
46322131--46322252	41	3.0	40	82	3	145	26	27	20	26	1.99
46336731--46336761	13	2.4	13	94	0	53	19	12	6	61	1.53
46337183--46337217	8	4.4	8	96	0	61	68	8	0	22	1.16
46337568--46337774	91	2.3	90	85	4	269	30	14	23	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46337634--46337780	46	3.2	45	71	13	140	32	12	23	31	1.91
46341592--46341629	18	2.1	18	85	9	51	18	5	15	60	1.53
46342404--46342463	17	3.5	18	82	8	63	30	10	18	41	1.83
46355807--46355831	7	3.6	7	100	0	50	60	12	0	28	1.32
46356782--46356820	20	2.0	20	85	5	53	64	0	2	33	1.08
46356755--46356806	25	2.1	25	86	10	72	67	0	1	30	1.02
46359976--46360029	16	3.3	17	82	7	58	42	1	1	53	1.22
46366822--46366889	3	22.7	3	100	0	136	0	33	0	66	0.92
46371382--46371418	18	2.0	18	89	5	56	32	18	5	43	1.73
46374123--46374151	15	1.9	15	100	0	58	31	13	27	27	1.94
46376917--46377028	56	2.0	56	96	0	206	29	16	17	35	1.93
46377889--46377927	3	13.0	3	100	0	78	66	0	0	33	0.92
46378101--46378144	22	2.0	21	91	4	70	59	0	6	34	1.24
46378106--46378160	24	2.2	25	84	15	69	58	0	9	32	1.30
46378873--46378946	19	3.8	19	91	7	121	37	14	10	36	1.82
46378884--46378946	21	3.1	21	90	9	112	38	14	9	38	1.78
46379200--46379242	17	2.5	17	96	0	77	9	30	20	39	1.84
46379505--46379708	44	4.7	44	75	7	159	25	23	23	27	2.00
46379718--46380704	45	21.9	45	84	2	1221	31	21	16	31	1.95
46383135--46383203	25	2.7	25	82	8	77	55	7	17	20	1.65
46385452--46385486	16	2.2	16	94	0	61	42	20	17	20	1.89
46386932--46386961	9	3.3	9	95	0	51	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46387136--46387179	23	2.0	22	90	4	70	56	2	6	34	1.38
46387902--46387955	19	2.8	19	94	0	90	37	14	11	37	1.82
46388743--46388799	15	3.5	15	71	17	51	49	1	1	47	1.22
46389317--46389348	15	2.1	15	100	0	64	43	0	0	56	0.99
46390408--46390593	43	4.3	43	89	1	248	23	27	18	30	1.97
46390946--46390992	21	2.2	21	96	0	85	0	46	19	34	1.50
46392724--46392788	25	2.6	25	82	2	85	41	3	12	43	1.58
46392807--46392856	25	2.1	25	88	7	77	36	4	16	44	1.66
46392853--46392907	25	2.2	25	87	6	76	25	1	18	54	1.53
46392821--46392900	32	2.5	31	82	15	99	28	2	17	51	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182