genome.fa.s21.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  136  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41856019--41856067	24	2.0	25	92	8	82	73	8	10	8	1.25
41856459--41857097	323	2.0	323	90	2	1014	32	13	15	38	1.87
41857163--41857187	13	1.9	13	100	0	50	8	16	0	76	1.02
41860928--41861162	43	5.3	43	74	13	181	27	30	18	23	1.98
41860933--41861122	95	2.0	95	87	2	274	25	31	18	24	1.97
41861028--41861162	44	3.1	43	82	6	141	29	31	17	22	1.96
41861493--41861531	3	13.0	3	88	0	60	28	33	0	38	1.57
41862353--41862382	14	2.1	14	100	0	60	33	0	43	23	1.54
41868932--41869033	46	2.1	48	91	7	172	46	0	6	47	1.29
41869019--41869071	25	2.1	26	85	3	72	16	3	5	73	1.17
41869209--41869630	115	3.7	115	99	0	819	25	13	13	46	1.80
41870458--41870508	22	2.3	22	83	6	68	31	39	0	29	1.57
41870510--41870549	21	2.0	21	85	5	55	37	42	0	20	1.52
41871137--41871556	114	3.7	114	85	3	533	28	24	20	27	1.99
41871455--41871627	74	2.4	72	86	1	238	25	26	21	26	2.00
41871696--41871721	12	2.2	12	100	0	52	46	30	15	7	1.74
41876597--41876645	20	2.7	18	77	22	57	51	2	2	44	1.24
41886182--41886220	20	2.0	20	90	5	62	28	12	10	48	1.74
41886634--41886672	21	1.9	21	85	15	55	64	12	7	15	1.49
41888822--41888882	16	3.8	16	79	12	63	72	18	0	9	1.11
41905376--41905633	119	2.2	120	85	6	337	25	26	22	25	2.00
41905357--41905640	40	7.1	40	86	5	353	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41910851--41910907	24	2.4	24	90	0	87	47	8	5	38	1.57
41910863--41910914	24	2.2	24	89	0	77	51	5	3	38	1.44
41922116--41922153	14	2.8	14	84	4	51	50	5	18	26	1.68
41928920--41928991	3	24.3	3	74	13	60	26	2	5	65	1.28
41931170--41931369	46	4.3	46	82	9	226	28	22	15	34	1.94
41931270--41931386	52	2.3	52	92	1	191	27	23	13	35	1.93
41936335--41936651	84	3.8	84	78	10	237	45	10	9	34	1.72
41936412--41936821	88	4.7	88	77	8	329	41	11	12	34	1.78
41937285--41937345	30	2.0	30	93	0	104	36	21	13	29	1.91
41940335--41940387	22	2.3	24	77	9	65	66	11	9	13	1.46
41960683--41960719	17	2.1	18	85	14	51	24	2	18	54	1.57
41960680--41960724	19	2.3	20	78	17	51	26	2	15	55	1.52
41961459--41961506	20	2.5	20	82	3	62	43	2	0	54	1.12
41963088--41963156	30	2.3	30	89	2	102	39	2	26	31	1.71
41967888--41967934	17	2.9	16	78	6	58	65	0	0	34	0.93
41967888--41967980	9	10.4	9	69	15	59	60	2	2	35	1.21
41972099--41972135	16	2.1	19	85	14	53	72	2	13	10	1.21
41980780--41980837	29	2.0	29	100	0	116	20	24	27	27	1.99
41980973--41981042	28	2.5	27	81	6	77	32	1	2	62	1.18
41981529--41981565	13	2.7	14	80	20	51	21	5	8	64	1.40
41984011--41984277	72	3.7	71	82	7	324	24	5	14	55	1.60
41984015--41984277	147	1.8	145	85	4	379	24	5	14	55	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41986083--41986125	21	2.1	20	83	12	52	13	2	9	74	1.16
41987318--41987346	14	2.1	14	100	0	58	62	6	0	31	1.22
41998726--41998879	44	3.5	44	85	1	193	30	21	22	25	1.99
41999202--41999321	41	2.9	42	74	8	111	28	17	22	31	1.97
42000695--42000744	25	2.0	25	100	0	100	32	12	16	40	1.84
42000982--42001026	21	2.1	21	88	8	65	15	2	8	73	1.18
42001340--42001499	80	2.0	80	95	0	284	21	13	7	57	1.60
42003795--42003835	13	3.2	13	89	0	64	43	29	7	19	1.78
42005444--42005514	30	2.4	30	83	2	81	39	11	21	28	1.87
42005535--42005662	59	2.2	60	85	7	172	35	13	26	24	1.92
42005496--42005617	29	4.2	29	71	10	122	38	13	26	21	1.91
42005684--42005752	30	2.3	30	82	0	84	44	13	26	15	1.83
42013192--42013259	30	2.3	29	85	7	84	38	16	23	22	1.93
42013250--42013320	29	2.4	30	85	2	90	45	9	30	14	1.77
42013298--42013499	30	6.7	30	75	6	160	39	12	23	25	1.89
42013298--42013499	60	3.4	59	75	8	210	39	12	23	25	1.89
42013192--42013499	120	2.6	119	84	3	370	39	13	24	22	1.90
42016638--42016692	15	3.6	16	80	7	51	52	1	1	43	1.22
42016883--42016933	16	3.2	16	91	0	66	25	23	3	47	1.69
42020881--42020923	21	2.0	21	82	8	52	44	0	11	44	1.40
42026376--42026411	18	1.9	19	88	5	56	33	8	8	50	1.63
42029776--42029820	22	2.0	22	86	8	63	31	2	6	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42031237--42031269	14	2.4	14	90	5	50	72	12	0	15	1.12
42031659--42031686	4	7.0	4	100	0	56	25	0	0	75	0.81
42037139--42037163	13	1.9	13	100	0	50	40	16	16	28	1.89
42038721--42038756	17	2.1	17	94	0	63	19	33	0	47	1.50
42042263--42042317	18	3.3	17	85	9	69	81	0	18	0	0.68
42042263--42042318	24	2.4	24	84	3	78	82	0	17	0	0.68
42042263--42042317	15	3.7	15	83	11	78	81	0	18	0	0.68
42042265--42042317	21	2.5	21	82	14	65	81	0	18	0	0.70
42042263--42042317	6	9.8	6	76	20	57	81	0	18	0	0.68
42043532--42043668	72	1.9	72	92	0	229	29	13	29	26	1.94
42043709--42044361	50	13.0	50	75	2	567	32	20	19	28	1.97
42043709--42044344	100	6.4	99	86	2	790	32	20	19	27	1.97
42046432--42046481	23	2.2	22	82	3	55	22	2	8	68	1.26
42046568--42046624	27	2.2	27	84	6	73	36	8	1	52	1.43
42046834--42046862	10	2.9	10	100	0	58	51	10	6	31	1.62
42047253--42047395	72	2.0	72	91	2	234	28	18	17	34	1.94
42048946--42049036	10	9.3	10	70	13	55	58	0	7	34	1.27
42048946--42049062	40	3.0	38	85	5	135	58	0	6	33	1.30
42048989--42049053	10	6.6	10	75	8	53	60	1	4	33	1.27
42057750--42057804	9	6.2	9	85	2	67	43	21	9	25	1.82
42057967--42057996	13	2.3	13	100	0	60	16	0	43	40	1.48
42058714--42058853	40	3.5	40	75	6	133	30	24	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42058719--42058854	41	3.4	41	76	9	138	32	25	16	25	1.96
42059692--42059760	4	17.0	4	76	19	56	2	21	1	73	1.04
42059692--42059756	29	2.3	29	86	2	87	3	21	1	73	1.05
42059693--42059774	33	2.5	33	83	11	98	4	18	1	75	1.04
42059785--42060043	5	51.8	5	95	2	459	59	0	0	40	1.01
42061934--42062023	38	2.4	38	98	0	171	31	35	14	18	1.91
42066851--42066912	16	3.9	15	76	19	63	1	20	3	74	1.05
42066851--42066902	25	2.0	26	85	3	70	1	21	3	73	1.10
42066934--42066974	5	8.2	5	100	0	82	58	0	0	41	0.98
42067813--42067861	24	2.0	24	88	0	71	38	6	24	30	1.80
42075285--42075434	42	3.6	42	85	3	212	16	23	16	43	1.87
42075319--42075422	21	5.0	21	65	8	59	19	25	15	39	1.91
42075289--42075460	42	4.1	42	83	3	193	17	24	16	41	1.90
42075286--42075451	84	2.0	84	84	2	217	16	23	16	43	1.87
42077138--42077223	27	3.2	26	72	6	73	24	23	8	44	1.80
42077138--42077250	54	2.1	54	81	3	129	27	23	7	40	1.82
42082933--42082971	20	2.0	20	85	9	55	53	2	5	38	1.37
42093368--42093438	24	2.9	24	74	14	56	16	25	21	36	1.94
42093383--42093439	24	2.3	24	80	17	64	19	24	19	36	1.94
42093374--42093496	25	5.0	25	74	8	117	21	27	20	30	1.98
42096122--42096158	19	1.9	19	100	0	74	27	27	0	45	1.54
42106037--42106102	27	2.5	26	77	2	69	33	18	15	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42107770--42107954	79	2.3	81	84	7	236	24	22	27	25	2.00
42107771--42107954	40	4.6	40	83	9	216	24	22	27	25	2.00
42107823--42107987	79	2.1	79	84	6	210	26	21	27	25	1.99
42111388--42111460	31	2.4	31	80	0	83	21	24	35	17	1.95
42114307--42114331	7	3.6	7	100	0	50	72	0	16	12	1.13
42115391--42115471	39	2.1	39	95	0	144	35	7	24	32	1.83
42117260--42117361	41	2.5	40	85	6	132	26	25	19	28	1.99
42121374--42121553	92	2.0	92	93	0	306	33	20	15	31	1.93
42126829--42126930	41	2.5	40	85	6	132	26	25	19	28	1.99
42131575--42131684	38	2.9	37	78	10	114	20	15	30	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182