genome.fa.s21.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  102  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30698030--30698144	50	2.3	49	80	7	142	25	23	20	31	1.98
30698084--30698148	25	2.6	25	81	13	80	24	26	21	27	1.99
30706529--30706595	25	2.7	25	80	0	89	26	20	22	29	1.99
30715085--30715205	41	3.0	41	83	2	145	34	25	19	19	1.96
30716656--30716854	29	6.8	29	82	0	209	34	15	26	24	1.94
30720187--30720322	40	3.4	40	89	0	191	26	13	27	31	1.94
30722309--30722462	45	3.4	45	79	6	134	22	23	14	40	1.90
30722477--30722550	24	3.2	24	66	14	66	24	16	14	44	1.85
30728036--30728073	16	2.4	16	86	0	58	31	28	21	18	1.97
30728342--30728464	45	2.7	45	87	0	174	25	21	15	38	1.92
30728432--30728551	45	2.7	45	83	5	136	23	18	15	43	1.87
30730793--30730859	34	1.9	35	90	3	109	46	10	8	34	1.70
30731214--30731238	3	8.3	3	100	0	50	68	0	0	32	0.90
30732262--30732331	29	2.3	30	82	4	79	44	14	11	30	1.80
30738348--30738495	74	2.0	74	89	1	224	41	14	8	36	1.75
30740952--30740985	6	5.7	6	92	0	59	17	26	0	55	1.42
30740952--30740988	12	3.1	12	92	0	65	18	27	0	54	1.44
30749816--30749901	43	2.0	43	90	0	136	52	3	24	19	1.62
30749874--30749924	18	2.7	19	87	6	68	52	1	25	19	1.56
30749889--30749943	27	2.0	27	82	6	67	49	1	25	23	1.60
30749876--30749924	19	2.6	19	87	6	64	53	2	24	20	1.56
30750735--30750874	54	2.6	54	81	1	172	25	25	33	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30759231--30759260	11	2.7	11	100	0	60	33	10	10	46	1.71
30765775--30765899	28	4.5	28	90	0	187	32	26	19	21	1.97
30766016--30766095	26	3.1	26	83	3	108	41	23	15	20	1.89
30766015--30766091	25	3.0	25	83	3	100	42	24	14	18	1.87
30766242--30766650	27	15.3	27	79	5	298	17	18	21	42	1.90
30769099--30769125	14	1.9	14	100	0	54	55	0	7	37	1.28
30770352--30770486	11	12.0	11	65	23	52	42	3	2	51	1.35
30771961--30772104	43	3.3	43	86	1	182	30	22	16	29	1.96
30772074--30772261	48	3.9	48	81	1	162	32	18	16	32	1.93
30772074--30772257	96	1.9	96	83	2	235	32	17	16	33	1.93
30772253--30772347	30	3.1	30	76	7	109	48	15	5	30	1.67
30781746--30781774	9	3.0	10	90	10	51	58	0	20	20	1.39
30782022--30782070	25	2.0	25	87	0	71	38	12	12	36	1.80
30782493--30782541	24	2.0	24	96	0	89	42	10	16	30	1.81
30787018--30787107	25	3.6	25	79	7	94	32	20	25	22	1.98
30799192--30799404	70	3.0	70	99	0	417	47	5	1	46	1.33
30799201--30799382	35	5.2	35	67	15	142	45	6	1	47	1.34
30802019--30802079	19	3.1	19	81	9	70	49	0	3	47	1.18
30802026--30802079	21	2.7	20	82	8	65	50	0	3	46	1.19
30804894--30804962	24	2.9	24	85	8	88	52	7	4	36	1.49
30807387--30807443	29	2.0	29	93	6	98	36	14	38	10	1.80
30808023--30808052	13	2.3	13	100	0	60	16	0	43	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30811385--30811594	40	5.3	40	92	0	314	24	20	28	26	1.99
30811332--30811594	80	3.3	80	85	2	316	24	20	27	26	1.99
30811332--30811594	120	2.2	120	83	3	325	24	20	27	26	1.99
30811385--30811629	80	3.1	80	85	2	253	25	20	28	25	1.99
30819321--30819544	40	5.6	40	91	1	308	24	20	28	26	1.99
30819282--30819544	80	3.3	80	85	3	318	23	20	28	26	1.99
30819282--30819544	120	2.2	120	82	4	318	23	20	28	26	1.99
30823723--30823775	25	2.3	23	78	12	63	54	7	5	32	1.52
30823740--30823783	23	1.9	23	81	9	54	50	6	4	38	1.50
30823808--30823839	16	1.9	17	93	6	57	78	0	0	21	0.76
30824331--30824373	19	2.3	19	95	0	77	39	16	6	37	1.75
30824915--30825040	45	2.8	44	83	2	153	24	23	21	30	1.99
30824925--30825040	44	2.6	44	83	6	135	25	22	22	29	1.99
30825338--30825433	44	2.2	44	81	3	104	29	22	20	27	1.99
30825437--30826720	88	14.6	88	84	2	1468	20	23	27	28	1.99
30825453--30826389	133	7.1	132	71	6	712	20	23	27	28	1.99
30825540--30826205	221	3.0	221	78	6	842	20	23	27	29	1.99
30825606--30826275	221	3.0	219	78	3	795	20	23	27	28	1.99
30828897--30828963	26	2.5	26	80	7	73	56	5	16	20	1.61
30832957--30832995	3	12.7	3	83	5	51	71	0	0	28	0.86
30832957--30832994	16	2.4	16	91	4	60	73	0	0	26	0.83
30833438--30833514	19	3.7	21	76	13	68	41	15	5	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30833438--30833495	22	2.6	22	81	7	64	41	17	5	36	1.72
30833474--30833527	19	2.8	19	88	0	90	37	14	9	38	1.79
30835777--30835803	7	3.9	7	100	0	54	59	0	11	29	1.32
30836542--30836596	3	18.0	3	81	10	58	65	0	3	30	1.10
30837595--30837665	20	3.5	20	84	0	97	5	22	25	46	1.73
30846294--30846339	20	2.3	20	88	0	65	23	23	32	19	1.97
30847121--30847182	24	2.6	24	86	0	79	37	1	25	35	1.66
30850056--30850080	13	1.9	13	100	0	50	36	0	32	32	1.58
30850266--30850310	22	2.0	22	91	0	72	46	22	2	28	1.63
30851369--30851411	18	2.3	19	84	4	52	32	20	32	13	1.92
30852579--30852655	13	5.9	13	87	0	118	24	9	27	38	1.85
30860469--30860623	57	2.7	55	84	10	163	50	5	2	41	1.40
30860496--30860623	57	2.2	58	89	6	190	50	4	3	41	1.39
30863252--30863307	27	2.1	27	96	0	103	33	8	14	42	1.77
30864848--30865052	40	5.1	40	82	2	250	22	28	17	31	1.97
30864848--30865069	120	1.9	119	86	6	324	21	28	17	32	1.96
30871709--30871902	40	4.9	40	81	1	212	20	26	18	34	1.96
30871711--30871902	79	2.4	79	85	2	242	20	26	18	34	1.96
30876052--30876089	6	6.3	6	82	11	51	0	50	2	47	1.15
30877225--30877336	56	2.0	56	100	0	224	44	7	14	33	1.72
30877436--30877488	22	2.5	20	72	19	54	64	0	0	35	0.94
30881768--30882244	237	2.0	234	83	7	590	43	7	9	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30883758--30883789	2	16.0	2	100	0	64	50	0	50	0	1.00
30885752--30885808	13	4.6	13	74	12	57	43	0	0	56	0.99
30885756--30885802	12	3.9	12	81	8	60	36	0	0	63	0.94
30885757--30885802	11	3.9	11	81	13	56	34	0	0	65	0.93
30887253--30887294	23	1.9	21	85	9	57	23	0	4	71	1.05
30887502--30887543	16	2.7	15	85	7	57	38	2	2	57	1.25
30896261--30896326	27	2.4	27	80	5	80	21	36	22	19	1.95
30900755--30900803	20	2.7	18	77	22	57	51	4	2	42	1.32
30907760--30907794	18	1.9	18	88	11	54	28	0	8	62	1.24
30907802--30907848	16	2.8	16	78	12	51	31	4	4	59	1.36
30908028--30908069	16	2.7	16	85	3	59	35	0	4	59	1.19
30908028--30908069	14	3.1	13	78	21	50	35	0	4	59	1.19
30908114--30908166	21	2.5	21	81	6	54	32	1	9	56	1.42
30915396--30915451	21	2.8	21	80	20	66	46	10	0	42	1.38
30943225--30943517	50	5.8	50	94	0	469	25	23	31	19	1.98
30946560--30946584	10	2.5	10	100	0	50	24	8	0	68	1.16
30953018--30953052	15	2.3	15	90	0	52	71	8	5	14	1.29
30953007--30953036	9	3.3	9	100	0	60	80	10	0	10	0.92
30956437--30956611	71	2.5	71	86	1	226	28	21	20	29	1.98
30964701--30964745	16	2.8	17	78	21	53	37	4	0	57	1.19
30967024--30967067	22	1.9	24	86	9	65	45	2	9	43	1.48
30967168--30967209	20	2.1	20	86	8	59	45	7	7	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30967439--30967502	13	4.9	13	82	0	83	28	6	28	37	1.81
30982678--30982706	11	2.5	12	94	5	51	79	3	0	17	0.87
30984513--30984767	44	5.9	44	70	9	173	27	23	19	29	1.98
30984790--30985086	100	3.0	99	85	1	407	24	23	21	30	1.99
30985286--30985447	88	1.8	88	93	0	279	27	27	19	26	1.99
30985297--30985435	45	3.1	45	72	4	138	28	28	17	25	1.97
30997585--30997655	27	2.6	28	82	6	92	56	2	2	38	1.29
30997592--30997666	23	3.1	23	76	14	78	58	2	1	37	1.20
30997626--30997694	31	2.2	33	84	12	99	65	2	0	31	1.08
30997595--30997684	27	3.2	27	73	14	83	61	3	1	34	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182