genome.fa.s21.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  179  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54341327--54341559	116	2.0	116	100	0	466	44	11	14	30	1.80
54342600--54342648	21	2.3	21	82	3	62	10	16	12	61	1.57
54343147--54343200	23	2.3	23	77	3	54	61	7	12	18	1.54
54344286--54344314	14	2.0	15	93	6	51	48	0	3	48	1.18
54369878--54369933	24	2.3	24	78	9	60	57	3	0	39	1.16
54370519--54370568	25	2.0	26	84	4	66	66	6	6	22	1.36
54370697--54370747	15	3.5	15	70	5	50	49	13	13	23	1.78
54373862--54373889	4	7.0	4	100	0	56	50	0	0	50	1.00
54373932--54373974	20	2.2	20	100	0	86	16	9	0	74	1.06
54390995--54391038	21	2.0	22	86	4	63	54	0	0	45	0.99
54392696--54392721	7	3.7	7	100	0	52	11	0	0	88	0.52
54393830--54393902	37	2.0	37	97	0	137	38	6	8	46	1.60
54394756--54394821	32	2.0	33	82	11	82	56	3	9	31	1.46
54395114--54395152	20	2.0	19	90	5	60	69	7	7	15	1.35
54401953--54401995	22	2.0	22	86	9	61	41	23	0	34	1.55
54401993--54402033	20	2.0	20	100	0	82	43	14	4	36	1.67
54407618--54407661	22	2.1	21	87	8	63	25	15	13	45	1.83
54415344--54415384	14	3.1	14	75	13	50	53	0	0	46	1.00
54415416--54415465	23	2.3	23	89	6	77	46	4	0	50	1.20
54415458--54415523	28	2.4	28	78	16	75	33	3	6	57	1.38
54417192--54417228	16	2.3	17	86	13	60	37	0	0	62	0.96
54417161--54417259	53	1.9	52	82	10	123	46	0	2	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54417344--54417381	18	2.1	18	95	0	67	50	0	0	50	1.00
54419192--54419223	14	2.3	15	89	10	50	25	3	0	71	1.00
54419200--54419246	23	2.1	22	88	4	67	29	4	2	63	1.25
54424068--54424102	12	3.0	12	95	4	63	34	0	0	65	0.93
54426506--54426544	19	2.1	19	85	0	51	61	0	0	38	0.96
54428381--54428466	43	2.0	43	95	0	154	32	16	8	43	1.77
54428812--54428853	9	4.8	9	88	5	50	64	0	0	35	0.94
54429307--54429377	29	2.5	30	80	13	87	63	0	1	35	1.03
54429307--54429378	27	2.5	28	80	14	85	63	0	1	34	1.03
54431681--54431732	25	2.1	25	100	0	104	23	23	11	42	1.86
54439035--54439073	18	2.1	19	86	13	55	35	15	12	35	1.86
54440818--54440850	14	2.4	14	90	5	50	51	3	3	42	1.32
54440981--54441009	14	2.1	14	100	0	58	34	6	20	37	1.80
54448374--54448410	18	2.1	18	89	0	56	64	2	32	0	1.07
54451729--54451767	6	6.5	6	87	0	60	0	25	35	38	1.56
54451729--54451767	12	3.2	12	96	0	69	0	25	35	38	1.56
54453534--54453575	16	2.7	15	85	7	57	57	2	2	38	1.25
54453612--54453693	38	2.2	38	97	0	155	39	2	3	54	1.31
54453727--54453848	60	2.0	60	85	3	165	54	14	0	30	1.47
54453902--54453926	8	3.1	8	100	0	50	60	12	0	28	1.32
54453836--54454110	49	5.7	49	84	4	362	54	14	1	29	1.47
54453836--54454110	97	2.8	97	91	3	412	54	14	1	29	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54454010--54454251	69	3.7	70	69	23	172	54	13	0	30	1.44
54454165--54454247	41	1.9	47	76	16	90	54	13	1	31	1.47
54453889--54454122	27	9.9	22	79	17	240	55	14	0	29	1.45
54454398--54454448	17	3.1	17	77	8	52	0	29	0	70	0.87
54454555--54454619	27	2.4	27	97	0	121	15	33	23	27	1.95
54462553--54462577	13	1.9	13	100	0	50	32	24	8	36	1.84
54478130--54478182	27	2.0	27	88	0	79	32	0	3	64	1.12
54478134--54478172	17	2.2	17	90	4	60	28	0	5	66	1.12
54481522--54481571	21	2.3	21	96	3	91	12	4	40	44	1.60
54486371--54486429	23	2.7	21	77	12	64	15	20	15	49	1.80
54488632--54488662	3	10.3	3	100	0	62	32	0	0	67	0.91
54490743--54490809	3	22.7	3	75	14	59	61	4	2	31	1.31
54490745--54490802	23	2.4	23	78	13	64	60	5	3	31	1.35
54490721--54490809	26	3.4	26	75	16	78	61	4	3	30	1.32
54497575--54497777	112	1.8	113	83	1	273	36	30	11	22	1.89
54509226--54509281	27	2.0	27	86	6	76	19	7	25	48	1.74
54514775--54514800	13	2.0	13	100	0	52	38	15	15	30	1.88
54533013--54533057	21	2.1	21	83	4	54	35	0	6	57	1.25
54541348--54541375	8	3.5	8	100	0	56	0	10	0	89	0.49
54543714--54543869	76	2.1	76	91	0	249	35	16	16	32	1.90
54544579--54544613	18	1.9	18	88	0	52	25	2	25	45	1.67
54548524--54548573	23	2.1	24	81	3	57	34	6	16	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54549713--54549833	64	1.9	65	85	1	172	46	5	3	44	1.43
54559379--54559477	51	1.9	51	83	4	128	44	2	8	45	1.44
54564072--54564104	11	3.1	11	91	4	50	66	3	0	30	1.06
54564188--54564248	10	6.3	10	78	12	65	29	1	1	67	1.10
54564198--54564248	19	2.7	18	82	14	59	27	1	1	68	1.11
54564188--54564262	29	2.6	27	79	10	69	29	4	1	65	1.19
54564213--54564284	29	2.5	30	75	6	76	33	2	1	62	1.18
54566540--54566590	23	2.3	23	96	3	95	7	7	15	68	1.37
54569866--54569923	27	2.1	27	87	6	82	41	0	1	56	1.09
54569874--54569931	27	2.1	27	84	6	73	48	0	1	50	1.11
54582562--54582593	12	2.4	14	90	10	50	28	0	0	71	0.86
54588667--54588699	16	2.0	17	88	5	50	42	15	12	30	1.83
54590509--54590563	26	2.1	27	86	10	78	27	5	7	60	1.46
54604785--54605232	224	2.0	224	100	0	896	33	12	17	36	1.88
54608794--54608861	32	2.1	32	100	0	136	48	26	4	20	1.68
54610121--54610669	278	2.0	277	82	3	676	34	20	13	31	1.91
54612831--54612860	15	1.9	16	93	6	53	6	0	46	46	1.29
54613415--54613576	87	1.9	87	85	2	227	25	24	20	29	1.99
54613427--54613795	44	8.5	43	72	12	213	27	21	20	31	1.98
54622405--54622516	56	2.0	56	92	0	188	25	31	13	29	1.94
54634894--54634926	6	5.5	6	92	0	57	0	63	0	36	0.95
54638743--54638825	3	28.0	3	97	2	159	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54642280--54642308	5	5.8	5	100	0	58	0	17	0	82	0.66
54646036--54646073	6	6.3	6	96	0	67	13	68	0	18	1.21
54656394--54656424	16	1.9	16	93	0	53	29	3	3	64	1.25
54662660--54662703	4	11.0	4	100	0	88	50	25	0	25	1.50
54666298--54666374	38	2.0	38	97	0	145	42	10	11	35	1.76
54671789--54672288	248	2.0	248	94	0	876	37	15	12	34	1.85
54673445--54673500	20	2.8	19	76	12	51	32	3	19	44	1.68
54676641--54676737	49	2.0	49	97	0	185	42	14	10	32	1.79
54682067--54682093	13	2.1	13	100	0	54	22	14	0	62	1.31
54682063--54682127	33	2.0	33	93	0	112	20	12	0	67	1.22
54689010--54689081	33	2.2	32	85	11	94	40	1	6	51	1.37
54689504--54689557	18	3.1	17	81	7	72	44	0	20	35	1.52
54689650--54689758	38	2.8	39	77	6	114	22	20	25	31	1.98
54690914--54691139	26	8.8	26	84	4	264	20	15	27	36	1.93
54691069--54691112	22	2.0	22	95	0	79	25	13	20	40	1.89
54692201--54692320	54	2.2	54	79	5	127	24	20	31	23	1.98
54716290--54716327	16	2.4	16	82	8	51	42	0	0	57	0.98
54716523--54716596	29	2.5	30	82	4	78	32	12	9	45	1.73
54716545--54716627	31	2.7	31	90	1	123	31	13	12	43	1.80
54717900--54717932	17	1.9	17	100	0	66	48	0	9	42	1.35
54724741--54724800	31	1.9	31	83	6	77	36	13	10	40	1.78
54729956--54730292	103	3.3	102	89	3	489	19	20	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54733651--54733704	18	2.9	18	81	8	56	33	0	11	55	1.35
54733638--54733723	31	2.8	31	77	8	77	34	1	12	51	1.48
54741956--54741998	18	2.4	18	80	3	52	16	11	4	67	1.38
54758588--54758612	8	3.1	8	100	0	50	48	0	40	12	1.40
54771562--54771653	43	2.2	41	84	5	112	29	1	2	67	1.09
54788913--54789541	305	2.1	304	93	2	1073	42	20	11	25	1.85
54804148--54804173	13	2.0	13	100	0	52	30	15	7	46	1.74
54807325--54807350	3	8.7	3	100	0	52	69	0	30	0	0.89
54810323--54810398	31	2.5	30	77	10	75	42	3	11	42	1.60
54815567--54815617	17	2.9	17	74	5	57	50	1	3	43	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182