genome.fa.s21.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  65  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19820117--19820175	31	2.0	30	86	6	84	54	10	1	33	1.44
19820116--19820181	29	2.3	27	80	14	78	56	9	1	33	1.40
19824231--19824271	21	2.0	21	90	0	64	19	29	21	29	1.98
19834289--19834465	34	5.1	34	69	5	131	28	24	26	20	1.99
19834285--19834377	35	2.7	35	77	1	98	27	23	25	22	2.00
19834285--19834473	69	2.7	69	83	1	254	28	24	25	21	1.99
19835514--19835545	11	2.8	12	86	13	50	53	0	0	46	1.00
19841766--19841816	22	2.3	22	79	0	66	27	9	29	33	1.89
19842060--19842092	4	8.2	4	100	0	66	24	0	24	51	1.48
19843759--19843812	18	3.1	17	80	17	58	35	1	0	62	1.06
19852471--19852507	9	4.1	9	92	0	65	29	10	13	45	1.77
19852561--19852591	9	3.4	9	90	0	53	38	22	12	25	1.90
19857012--19857054	15	2.9	15	86	10	54	27	0	4	67	1.10
19857855--19857924	27	2.7	27	91	4	108	41	5	0	52	1.25
19858136--19858208	19	3.8	19	72	0	65	41	20	9	28	1.84
19867340--19867372	13	2.4	14	90	5	50	78	0	12	9	0.95
19870042--19870081	16	2.5	17	84	12	57	50	2	0	47	1.14
19873076--19873114	17	2.2	18	86	4	53	66	7	2	23	1.30
19882237--19882272	17	2.2	16	90	5	54	30	0	2	66	1.06
19884305--19884468	90	1.8	90	85	0	229	18	33	8	39	1.81
19888782--19888840	16	3.7	15	71	24	50	35	1	5	57	1.31
19889354--19889410	21	2.8	20	78	7	69	38	3	22	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19889835--19889867	17	1.9	17	100	0	66	48	0	9	42	1.35
19897768--19897951	46	4.0	46	76	6	158	46	11	14	27	1.79
19901505--19901539	16	2.2	16	94	0	61	20	20	14	45	1.85
19904027--19904088	20	3.2	20	64	13	58	35	14	19	30	1.92
19917930--19918152	116	1.9	116	100	0	446	34	7	17	40	1.78
19918902--19918977	37	2.1	37	97	0	143	32	9	10	47	1.70
19919709--19919918	9	23.1	9	80	3	233	48	16	2	32	1.59
19924733--19924789	21	2.7	21	91	0	96	33	19	43	3	1.68
19931637--19931889	46	5.6	46	91	1	406	32	15	22	29	1.94
19933308--19933346	20	2.0	20	94	0	69	23	17	28	30	1.97
19938398--19938435	19	2.0	20	84	5	51	42	2	5	50	1.39
19938450--19938516	30	2.3	30	73	19	70	52	1	0	46	1.09
19942120--19942393	43	6.4	43	77	9	220	29	25	18	25	1.98
19942745--19942893	66	2.3	66	88	4	212	17	26	16	39	1.91
19948306--19948898	9	70.2	9	64	21	169	37	2	16	44	1.59
19948319--19948634	16	19.9	16	64	21	96	37	1	16	45	1.55
19948319--19948899	41	14.4	41	72	14	401	37	1	16	44	1.58
19948311--19948395	25	3.4	25	80	9	86	34	0	17	48	1.48
19948400--19948570	25	6.8	25	76	7	100	37	1	16	45	1.55
19948525--19948877	25	14.5	25	72	13	193	37	1	16	44	1.58
19948328--19948899	119	4.8	119	96	1	1013	37	1	16	44	1.59
19948441--19948844	94	4.3	91	75	10	305	37	1	15	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19948763--19948898	25	5.3	25	80	6	139	37	1	16	44	1.56
19948930--19948973	20	2.3	18	78	14	52	59	0	0	40	0.98
19948920--19948955	12	2.9	12	91	4	54	61	0	0	38	0.96
19948938--19949038	20	4.7	20	74	17	85	50	1	3	43	1.32
19948964--19949055	28	3.6	28	75	22	119	45	3	4	46	1.39
19948944--19949069	48	2.7	47	91	2	200	49	3	3	44	1.34
19949012--19949080	28	2.4	29	83	11	81	50	2	2	43	1.32
19949057--19949161	11	9.1	12	69	15	53	56	1	4	37	1.32
19949102--19949164	23	2.7	23	76	11	65	55	1	1	41	1.19
19949103--19949164	24	2.6	24	77	10	65	54	1	1	41	1.19
19949172--19949262	28	3.3	27	80	6	85	51	3	3	41	1.34
19949154--19949276	49	2.5	50	82	13	148	52	2	3	41	1.30
19949150--19949276	23	5.2	25	74	18	115	52	2	3	41	1.30
19949913--19949955	15	2.9	15	80	13	52	62	11	18	6	1.50
19953395--19953514	42	2.9	40	77	13	127	33	26	21	18	1.96
19958197--19958229	3	11.0	3	87	12	50	30	3	0	66	1.06
19964161--19964543	50	7.6	50	82	4	421	30	15	24	30	1.96
19966609--19966754	49	3.0	49	90	5	224	27	11	27	33	1.91
19970114--19970500	50	7.7	50	81	3	427	30	15	24	30	1.95
19973943--19974102	80	2.0	80	97	0	302	38	19	10	31	1.86
19977673--19977759	36	2.4	36	82	0	102	21	17	13	47	1.82
19985752--19985834	42	2.0	42	92	0	139	31	22	4	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19988057--19988106	3	17.3	3	79	8	59	30	0	4	66	1.10
19988060--19988101	18	2.4	18	92	4	68	28	0	4	66	1.12
19989772--19989809	13	2.8	14	84	4	51	44	0	13	42	1.43
19994295--19994619	162	2.0	162	100	0	650	48	13	9	28	1.73
20005964--20006003	21	1.9	21	84	0	53	45	10	7	37	1.66
20008856--20008904	13	3.7	13	81	13	55	18	2	4	75	1.06
20010140--20010214	10	7.3	10	76	19	57	72	0	28	0	0.86
20010140--20010266	14	9.1	14	69	21	72	69	1	27	1	1.07
20010139--20010258	20	5.8	20	68	23	72	69	1	27	1	1.08
20010143--20010258	44	2.6	44	87	6	155	69	1	26	1	1.07
20010339--20010519	79	2.3	79	100	0	362	38	4	11	45	1.61
20010744--20011694	285	3.3	285	93	1	1586	50	7	11	31	1.66
20013929--20013954	11	2.4	11	100	0	52	38	7	15	38	1.76
20019465--20019508	16	2.8	15	83	10	52	61	13	0	25	1.32
20019807--20019858	27	1.9	27	92	0	86	23	28	28	19	1.98
20020369--20020442	28	2.7	27	85	4	94	59	0	4	36	1.16
20020729--20020769	19	2.2	19	86	8	57	48	0	4	46	1.23
20025980--20026008	15	1.9	15	100	0	58	24	13	27	34	1.93
20049144--20049176	17	1.9	17	93	0	57	39	6	21	33	1.78
20049428--20049467	18	2.1	20	86	9	57	42	0	5	52	1.23
20054757--20055595	92	9.4	89	91	1	1022	27	23	16	31	1.96
20055265--20055889	312	2.0	313	88	2	918	25	22	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20055570--20056307	89	8.3	89	94	0	1208	25	23	20	30	1.98
20054685--20056298	178	9.0	177	84	5	1168	26	23	18	30	1.97
20054911--20056298	267	5.2	267	83	5	1155	26	23	19	30	1.98
20054713--20056296	44	35.5	44	73	7	961	27	23	18	30	1.98
20074129--20074194	25	2.6	25	100	0	132	33	7	19	39	1.80
20079979--20080026	18	2.8	18	74	22	50	43	0	0	56	0.99
20079979--20080046	16	4.2	16	74	20	54	44	0	1	54	1.09
20079996--20080037	15	2.9	15	82	10	52	47	0	0	52	1.00
20080172--20080278	45	2.6	40	79	17	128	29	28	6	34	1.83
20080191--20080281	45	2.0	44	91	6	148	32	28	6	31	1.83
20080260--20080329	16	4.4	16	85	0	86	24	32	4	38	1.75
20080260--20080324	32	2.0	32	90	0	103	21	33	4	40	1.74
20085687--20085753	3	22.3	3	96	0	125	0	31	0	68	0.90
20092818--20092863	3	15.3	3	100	0	92	32	0	0	67	0.91
20096234--20096277	21	2.1	21	86	0	61	81	0	11	6	0.86
20097150--20097363	88	2.4	89	79	3	218	28	19	23	28	1.98
20097196--20097530	44	7.5	44	71	11	182	29	18	22	28	1.98
20097196--20097714	223	2.3	224	84	2	659	30	17	21	30	1.96
20097461--20097903	45	9.8	44	69	15	120	31	16	20	31	1.95
20097491--20097766	89	3.1	88	68	13	227	32	15	20	31	1.94
20097460--20097849	181	2.2	180	89	1	593	30	17	20	31	1.96
20097820--20098035	45	4.8	44	68	15	118	31	18	19	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20097685--20098042	137	2.6	137	87	1	495	32	17	19	30	1.95
20098732--20098778	9	5.4	9	76	19	55	8	12	8	70	1.34
20098710--20098748	15	2.5	15	83	4	51	5	15	5	74	1.17
20098718--20098776	25	2.4	25	88	2	93	8	11	8	71	1.32
20099782--20099824	3	14.3	3	100	0	86	32	0	0	67	0.91
20108167--20108192	10	2.6	10	100	0	52	0	38	0	61	0.96
20111920--20111952	3	11.0	3	100	0	66	33	33	33	0	1.58
20113932--20113984	26	2.0	26	100	0	106	35	15	15	33	1.88
20120313--20120355	3	14.3	3	95	0	77	32	2	0	65	1.06
20124105--20124129	7	3.6	7	100	0	50	12	12	0	76	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182