genome.fa.s21.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  133  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41055952--41056019	30	2.2	31	84	2	84	26	17	7	48	1.73
41065312--41065358	18	2.5	20	75	13	53	42	6	2	48	1.40
41065540--41065569	15	2.0	15	93	0	51	43	0	0	56	0.99
41065645--41065677	17	2.0	17	88	5	50	45	0	0	54	0.99
41066352--41066393	17	2.5	17	84	7	50	59	0	0	40	0.97
41066406--41066431	4	6.5	4	100	0	52	53	0	0	46	1.00
41066347--41066451	47	2.2	47	81	10	115	60	3	0	35	1.15
41067321--41067377	29	1.9	29	86	10	80	64	1	1	31	1.13
41068271--41068330	11	5.2	11	78	13	59	25	3	3	68	1.20
41068283--41068337	22	2.6	22	77	11	53	27	1	3	67	1.17
41069034--41069089	21	2.7	20	83	8	76	30	16	0	53	1.43
41069034--41069093	7	8.6	7	75	14	61	31	16	0	51	1.45
41069014--41069086	28	2.6	28	79	12	78	31	21	0	46	1.52
41071597--41071646	18	2.7	20	82	14	63	60	4	4	32	1.34
41081686--41081724	19	2.1	19	85	4	53	58	5	2	33	1.33
41081695--41081737	21	2.2	19	83	8	50	60	4	0	34	1.17
41081733--41081788	19	3.1	19	82	14	57	55	0	0	44	0.99
41081742--41081794	25	2.1	25	86	13	74	58	0	0	41	0.98
41083814--41083848	19	1.9	19	88	11	56	40	8	5	45	1.58
41084706--41084745	21	1.9	21	85	10	55	37	0	2	60	1.11
41084847--41084874	9	3.1	9	100	0	56	57	10	0	32	1.33
41084817--41085017	59	3.1	68	83	13	298	45	8	4	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41085006--41085047	16	2.6	16	92	0	66	42	7	2	47	1.43
41085021--41085075	22	2.5	22	84	0	74	43	1	1	52	1.22
41085372--41085424	24	2.2	25	86	3	72	33	3	7	54	1.46
41085391--41085436	24	1.9	24	86	8	67	36	6	10	45	1.65
41088876--41088934	29	2.0	29	93	0	100	23	10	32	33	1.88
41089025--41089076	24	2.2	24	92	0	86	36	3	7	51	1.49
41089025--41089088	24	2.7	24	87	4	76	35	4	10	48	1.59
41090299--41090358	31	1.9	31	86	0	84	60	5	5	30	1.40
41105737--41105766	14	2.2	13	94	5	51	66	0	0	33	0.92
41105779--41105848	29	2.4	29	85	7	88	54	1	8	35	1.40
41105769--41105874	29	3.7	26	77	14	86	55	1	6	35	1.37
41105780--41105872	30	3.1	28	82	10	89	59	1	7	32	1.33
41111833--41112145	124	2.5	123	85	5	405	30	18	13	37	1.90
41112224--41112358	34	3.9	34	82	6	157	44	14	0	41	1.44
41120828--41120859	1	32.0	1	93	0	55	3	0	0	96	0.20
41133927--41133978	25	2.1	25	85	0	68	44	21	17	17	1.87
41144439--41144497	20	3.0	20	79	0	73	40	22	16	20	1.91
41144392--41144497	40	2.7	40	80	2	106	40	24	16	17	1.90
41148573--41148844	40	6.8	40	95	1	483	25	29	20	24	1.99
41152310--41152444	43	3.2	43	78	6	150	32	26	15	25	1.95
41152285--41152444	84	1.9	84	84	2	214	31	26	16	25	1.96
41157711--41157763	11	4.6	11	76	15	54	60	5	5	28	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41159369--41159733	100	3.7	99	86	3	448	23	19	23	33	1.97
41159446--41159725	50	5.6	49	69	7	152	24	17	24	33	1.97
41159369--41159733	199	1.8	200	85	1	518	23	19	23	33	1.97
41159710--41159755	23	2.0	23	95	0	83	17	23	21	36	1.94
41159825--41160023	98	2.0	98	95	0	353	28	23	15	32	1.95
41161339--41161380	13	3.0	14	75	10	50	14	21	0	64	1.29
41162322--41162358	15	2.4	16	91	8	60	13	0	13	72	1.11
41165836--41165896	31	2.0	31	96	0	113	36	19	24	19	1.95
41168583--41168635	11	4.6	11	76	15	54	60	5	5	28	1.42
41174956--41174990	17	2.1	17	89	5	54	51	2	2	42	1.31
41177471--41177562	45	2.0	45	93	0	157	31	23	18	26	1.97
41177559--41177754	51	3.9	51	79	5	227	31	28	16	23	1.97
41177565--41177746	101	1.8	100	88	5	269	32	28	15	23	1.96
41179638--41179693	25	2.2	26	87	6	78	50	10	3	35	1.55
41179645--41179723	25	2.9	26	82	14	90	48	12	1	37	1.50
41181711--41181743	14	2.2	16	89	10	52	42	6	24	27	1.78
41187495--41187539	23	2.0	23	82	8	56	60	4	4	31	1.37
41188997--41189557	44	12.9	44	71	14	326	27	23	18	30	1.98
41189099--41189569	177	2.7	176	87	3	650	27	23	17	30	1.97
41189103--41189557	133	3.5	133	78	5	378	28	23	18	29	1.97
41191487--41191870	18	21.1	18	69	19	194	46	10	13	29	1.76
41191480--41191870	35	10.8	34	73	15	236	47	10	13	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41192381--41192420	10	3.9	10	87	6	62	0	15	0	85	0.61
41192380--41192420	21	2.0	21	95	0	73	0	17	0	82	0.66
41192469--41192495	12	2.2	12	100	0	54	0	22	51	25	1.48
41192712--41192810	7	13.9	7	74	12	76	0	24	0	75	0.80
41192712--41192808	21	4.4	21	77	10	95	0	23	0	76	0.79
41192714--41192804	24	3.8	24	73	13	80	0	24	0	75	0.80
41192727--41192810	31	2.7	32	87	5	102	0	26	0	73	0.83
41192909--41192950	21	2.0	22	90	4	68	9	4	7	78	1.08
41193282--41193412	30	4.4	29	79	7	129	41	3	25	29	1.70
41193606--41194440	78	10.8	76	87	4	1059	35	20	18	25	1.95
41193606--41194438	157	5.4	154	86	4	1056	35	20	18	25	1.95
41199287--41199325	4	10.0	4	94	5	71	48	0	25	25	1.51
41201040--41201443	17	22.5	17	71	15	201	45	10	13	29	1.78
41201420--41201489	16	4.5	16	67	13	56	50	7	11	31	1.65
41202287--41202339	18	2.7	19	85	11	72	0	30	0	69	0.88
41202275--41202349	31	2.4	31	84	8	91	0	28	0	72	0.86
41202305--41202343	18	2.2	18	95	0	69	0	25	0	74	0.82
41202277--41202349	13	5.6	13	75	15	62	0	28	0	71	0.87
41202432--41202489	21	2.7	21	86	5	71	0	12	8	79	0.94
41202449--41202495	21	2.3	21	85	3	60	0	10	12	76	1.02
41202460--41202507	21	2.3	22	78	10	55	0	10	14	75	1.06
41202713--41202787	29	2.5	31	76	10	84	41	0	25	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41202694--41202808	59	2.0	58	84	1	149	40	1	24	33	1.66
41213647--41213691	23	2.0	23	82	8	56	60	4	4	31	1.37
41213735--41213780	18	2.6	18	77	19	51	60	2	4	32	1.28
41213773--41213804	12	2.7	12	90	0	55	59	3	0	37	1.13
41215356--41215443	19	4.7	19	70	4	72	32	21	20	25	1.97
41217103--41217193	44	2.1	44	85	4	121	39	12	4	43	1.62
41219228--41219262	14	2.4	15	90	4	54	82	5	2	8	0.91
41219299--41219493	3	66.3	3	71	7	114	58	3	5	32	1.39
41220945--41221154	44	4.7	44	78	8	165	29	22	18	30	1.97
41221173--41221471	137	2.2	137	91	0	472	31	20	16	31	1.95
41221392--41222126	89	8.0	89	74	10	425	29	21	17	31	1.96
41221345--41221839	185	2.7	185	86	0	652	29	21	16	31	1.96
41220946--41222173	321	3.8	320	81	6	1383	29	21	17	31	1.96
41220944--41222118	45	25.7	45	71	14	540	29	21	17	31	1.96
41220946--41222126	643	1.8	638	84	5	1619	29	21	17	31	1.96
41222400--41222447	24	2.0	24	100	0	96	25	16	16	41	1.89
41231944--41232124	3	61.7	3	69	7	86	58	3	6	31	1.40
41231927--41231972	18	2.6	18	78	0	56	54	0	10	34	1.36
41233734--41233774	11	3.7	11	80	0	55	19	14	9	56	1.66
41233811--41233875	30	2.2	30	94	0	112	24	3	13	58	1.50
41234005--41234032	12	2.3	12	100	0	56	64	0	0	35	0.94
41235790--41235830	19	2.2	19	95	0	73	39	0	2	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41235802--41235860	5	12.2	5	75	7	50	49	0	0	50	1.00
41235814--41235860	14	3.3	15	82	8	53	53	0	0	46	1.00
41235815--41235865	19	2.5	21	84	12	70	54	0	0	45	0.99
41249502--41249560	30	2.0	30	86	0	82	57	10	3	28	1.48
41255631--41255662	16	2.1	15	94	5	55	37	12	25	25	1.91
41257218--41257256	20	2.0	20	94	0	69	30	10	23	35	1.88
41258846--41259162	104	3.0	104	91	0	499	29	17	19	34	1.94
41264507--41264690	40	4.6	41	84	11	199	24	27	22	26	2.00
41264507--41264690	79	2.3	82	82	13	217	24	27	22	26	2.00
41272446--41272628	79	2.3	81	84	7	232	25	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182