genome.fa.s21.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  49  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15377002--15377108	9	11.9	9	69	20	64	45	13	0	41	1.43
15378716--15378786	21	3.4	21	86	0	106	32	18	47	1	1.57
15379133--15379256	43	2.9	42	80	4	131	25	19	27	27	1.99
15379227--15379289	33	1.9	33	93	0	108	28	17	30	23	1.97
15385229--15385344	43	2.7	42	79	2	124	34	26	14	24	1.94
15389529--15389701	92	1.8	96	90	4	282	30	11	8	49	1.68
15391142--15391175	14	2.4	14	90	0	50	32	41	0	26	1.56
15391152--15391193	15	2.9	15	85	3	50	35	45	0	19	1.50
15391173--15391222	24	2.0	26	88	7	77	42	34	0	24	1.55
15391216--15391257	14	2.9	14	82	6	57	35	35	0	28	1.58
15391212--15391258	15	3.3	15	82	8	62	40	31	0	27	1.57
15391768--15391933	74	2.3	71	90	5	260	28	26	19	25	1.99
15391839--15392047	114	1.8	113	87	1	310	25	25	22	26	2.00
15391947--15392114	73	2.3	73	86	2	230	23	23	23	29	1.99
15391773--15392239	191	2.5	186	86	3	630	27	25	21	26	1.99
15392020--15392324	115	2.6	115	89	4	452	26	25	21	26	2.00
15392386--15392411	12	2.2	12	100	0	52	46	30	15	7	1.74
15395184--15395457	40	6.9	40	81	0	307	35	18	26	20	1.95
15395347--15395437	20	4.6	19	68	8	56	38	18	26	16	1.92
15396009--15396067	24	2.5	24	88	0	82	40	5	40	13	1.67
15398564--15398602	20	2.0	20	84	0	51	12	7	2	76	1.09
15400917--15400965	16	3.1	16	81	0	53	38	18	24	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15403064--15403109	22	2.1	22	100	0	92	45	19	8	26	1.79
15410411--15410470	30	2.0	30	96	0	111	48	16	21	13	1.80
15422530--15422574	21	2.1	21	83	0	54	35	20	13	31	1.91
15422681--15422815	71	1.9	71	90	0	216	31	28	14	25	1.94
15425684--15425721	11	3.5	11	92	0	58	0	15	2	81	0.80
15431482--15431536	17	3.2	16	78	19	58	80	10	7	1	0.99
15431502--15431530	15	1.9	15	100	0	58	82	10	6	0	0.83
15431483--15431515	10	3.4	10	95	4	59	84	6	9	0	0.76
15431546--15431581	16	2.2	16	90	5	54	83	0	16	0	0.65
15433712--15433987	50	5.5	49	70	6	205	33	22	19	25	1.97
15433700--15434031	100	3.3	100	96	0	585	32	21	21	24	1.98
15433751--15434037	50	5.7	50	71	6	240	33	20	20	25	1.97
15433963--15434112	74	2.0	75	92	1	248	34	22	20	23	1.97
15434055--15434361	50	6.1	51	75	6	272	33	23	18	24	1.96
15433863--15434212	174	2.0	175	90	0	558	33	21	19	25	1.97
15434038--15434345	100	3.1	100	88	0	483	35	23	17	23	1.96
15433763--15434311	274	2.0	275	89	1	850	33	22	19	24	1.97
15434337--15434386	25	2.0	25	88	0	73	34	20	20	26	1.96
15434239--15434486	125	2.0	125	88	1	372	35	22	17	24	1.96
15434362--15434542	50	3.6	49	73	4	166	33	20	19	26	1.97
15434362--15434542	100	1.8	100	87	2	274	33	20	19	26	1.97
15434137--15434542	225	1.8	225	83	3	539	33	21	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15434362--15434569	100	2.1	100	83	5	260	33	20	19	25	1.97
15435270--15435295	11	2.4	11	100	0	52	0	7	7	84	0.77
15435270--15435308	17	2.4	16	82	4	51	0	12	5	82	0.83
15441967--15442230	110	2.4	110	99	0	521	25	21	22	29	1.99
15444655--15444885	27	8.6	27	77	4	207	38	18	19	23	1.93
15444655--15444885	54	4.3	54	79	2	241	38	18	19	23	1.93
15444655--15444889	81	2.9	81	81	5	262	37	19	19	22	1.94
15444792--15444905	54	2.1	53	82	4	140	36	20	21	21	1.95
15444924--15445020	24	4.0	24	82	2	106	22	6	23	47	1.74
15444955--15445028	24	3.1	24	86	0	103	20	8	22	48	1.75
15445204--15445328	32	3.9	32	86	0	169	22	20	17	39	1.93
15449806--15449854	22	2.1	24	82	14	59	55	30	0	14	1.40
15451042--15451087	21	2.3	20	78	14	51	45	17	6	30	1.73
15455285--15455346	30	2.1	30	84	6	81	50	11	8	30	1.67
15464721--15464746	11	2.4	11	100	0	52	7	7	7	76	1.15
15469283--15469309	14	1.9	14	100	0	54	14	25	22	37	1.93
15470518--15470586	34	2.0	34	100	0	138	34	14	14	36	1.87
15476064--15476247	40	4.6	41	83	11	190	24	26	22	26	2.00
15476064--15476247	79	2.3	82	81	13	208	24	26	22	26	2.00
15476780--15476876	50	1.9	50	95	0	176	26	21	17	34	1.96
15484142--15484403	39	6.7	40	85	7	292	25	26	22	25	2.00
15495343--15495460	47	2.6	45	90	5	177	35	14	23	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15495439--15495622	54	3.4	54	77	8	176	36	15	23	23	1.93
15495505--15495645	53	2.6	55	79	5	153	35	17	24	23	1.95
15495447--15495657	108	2.0	109	81	1	255	38	15	23	22	1.92
15496913--15497054	27	5.3	27	87	0	187	35	19	22	21	1.96
15497673--15497724	27	2.0	26	84	3	68	17	26	21	34	1.95
15507169--15507453	47	6.1	47	93	1	455	30	12	31	25	1.92
15507427--15507517	46	2.0	46	84	0	119	32	9	31	25	1.89
15507180--15507502	141	2.3	140	85	4	411	31	12	31	25	1.92
15507663--15507804	37	3.8	37	93	0	230	23	18	30	26	1.97
15508918--15509428	40	12.8	40	95	0	887	22	20	29	27	1.99
15510047--15510163	40	2.9	40	96	0	207	22	21	30	25	1.98
15513430--15513626	47	4.1	47	83	7	250	32	11	28	26	1.91
15521220--15521254	17	2.1	17	89	5	54	51	8	0	40	1.33
15523144--15523198	22	2.3	22	84	12	65	36	9	5	49	1.58
15523648--15523792	73	2.0	72	93	1	245	28	19	15	35	1.93
15528274--15528340	12	5.6	11	77	16	71	82	0	16	1	0.75
15528276--15528339	8	7.9	8	75	16	60	81	0	17	1	0.77
15528286--15528337	6	8.8	6	79	12	54	78	0	19	1	0.84
15528285--15528331	14	3.4	13	83	13	58	78	0	19	2	0.85
15528284--15528340	17	3.4	16	81	11	69	80	0	17	1	0.79
15529746--15529881	72	1.9	72	85	0	191	35	11	24	28	1.91
15529818--15530110	51	5.6	52	75	7	218	32	18	21	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15529799--15530128	159	2.1	159	88	1	491	33	17	22	26	1.96
15529979--15530340	138	2.6	137	84	4	442	30	19	22	28	1.98
15530376--15530516	51	2.8	51	81	0	183	29	13	25	31	1.94
15530554--15530829	131	2.1	132	91	2	448	28	19	27	25	1.99
15532489--15532542	21	2.6	21	84	0	72	33	3	1	61	1.25
15532503--15532595	3	30.0	3	71	8	53	27	8	3	60	1.42
15532489--15532557	21	3.3	21	83	0	66	31	5	2	59	1.36
15532661--15532721	32	1.9	31	86	3	86	36	6	1	55	1.36
15532686--15532746	19	3.0	20	78	11	70	37	4	0	57	1.20
15532661--15532734	34	2.3	31	82	15	87	36	6	1	55	1.35
15533147--15533284	71	1.9	71	92	0	231	29	16	17	36	1.92
15537482--15537557	23	3.3	23	83	3	100	31	27	19	21	1.97
15537783--15537826	18	2.5	17	82	17	54	45	20	0	34	1.51
15542682--15542725	23	1.9	23	81	9	54	31	34	25	9	1.87
15551217--15551272	18	3.0	18	82	10	76	64	5	0	30	1.16
15551204--15551265	20	3.1	20	77	13	74	59	4	3	32	1.34
15553002--15553034	16	2.1	16	88	11	50	39	3	0	57	1.14
15554833--15554859	9	3.0	9	100	0	54	44	33	11	11	1.75
15556115--15556149	5	6.8	5	93	6	61	80	0	0	20	0.72
15556115--15556149	16	2.2	16	95	5	63	80	0	0	20	0.72
15556118--15556159	11	3.7	11	90	9	59	78	2	0	19	0.86
15556494--15556552	30	2.0	30	89	0	91	16	25	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15556472--15556542	17	4.4	17	71	18	62	21	26	23	28	1.99
15559243--15559426	66	2.8	66	80	1	208	22	26	25	25	2.00
15570865--15570903	18	2.2	18	100	0	78	28	20	30	20	1.98
15570608--15571195	295	2.0	295	99	0	1158	44	11	12	32	1.77
15571160--15571195	18	2.0	18	94	0	63	30	22	25	22	1.99
15583217--15583243	8	3.4	8	100	0	54	44	0	0	55	0.99
15583862--15583888	12	2.2	12	100	0	54	55	0	14	29	1.40
15590246--15590301	29	2.0	29	85	3	78	35	23	7	33	1.82
15591759--15591807	21	2.3	22	82	3	55	42	2	4	51	1.32
15592052--15592105	16	3.1	17	78	13	56	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182