genome.fa.s21.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  152  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46677717--46678150	27	16.1	27	82	4	455	19	17	20	42	1.89
46680312--46680383	36	2.0	36	100	0	144	30	5	19	44	1.73
46695376--46695794	187	2.3	180	88	4	594	42	7	25	24	1.81
46702740--46702777	16	2.4	16	86	0	58	23	39	7	28	1.83
46702730--46702850	62	2.0	62	94	0	215	26	28	10	33	1.90
46702802--46702840	16	2.4	16	91	0	60	28	33	7	30	1.85
46704333--46704485	81	1.9	81	98	0	297	22	8	24	44	1.80
46710179--46710322	39	3.7	40	81	11	156	24	27	22	25	2.00
46718000--46718184	79	2.3	82	84	7	238	25	27	22	24	2.00
46717981--46718184	40	5.1	40	82	8	238	25	27	22	25	2.00
46722231--46722280	24	2.1	24	84	0	64	50	6	6	38	1.52
46723455--46723532	37	2.1	37	100	0	156	29	5	16	48	1.68
46735628--46735659	16	1.9	17	93	6	57	56	3	40	0	1.15
46747576--46747610	6	5.8	6	86	0	52	14	5	0	80	0.89
46750973--46751011	16	2.4	17	82	8	53	35	12	33	17	1.88
46758890--46758927	18	2.1	19	90	5	60	23	23	13	39	1.90
46762152--46762186	18	2.0	18	88	5	54	14	45	28	11	1.79
46764104--46764151	23	2.0	24	92	4	80	37	10	18	33	1.85
46764557--46764779	39	5.7	40	85	8	266	25	22	27	24	2.00
46764557--46764779	79	2.8	81	84	9	282	25	22	27	24	2.00
46764557--46764812	79	3.3	79	81	10	217	26	21	27	24	1.99
46772546--46772809	40	6.7	40	89	5	360	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46772546--46772842	119	2.5	118	81	9	338	26	21	27	25	1.99
46774196--46774221	9	2.9	9	100	0	52	53	0	11	34	1.37
46774944--46774986	24	1.9	22	86	13	61	41	6	9	41	1.64
46775323--46775556	85	2.8	84	88	1	328	30	18	17	34	1.94
46775529--46775637	48	2.3	48	100	0	218	33	16	14	34	1.89
46776187--46776295	28	3.9	28	76	2	119	52	4	19	23	1.64
46776176--46776308	56	2.4	56	81	6	151	50	4	18	26	1.66
46776184--46776306	28	4.4	27	70	16	97	51	4	18	25	1.66
46780533--46780606	38	1.9	38	88	0	112	32	20	14	32	1.93
46784762--46784876	59	1.9	59	91	0	185	29	13	22	33	1.93
46785198--46785237	17	2.4	17	86	0	53	30	25	17	27	1.97
46787570--46787597	14	2.0	14	100	0	56	57	7	14	21	1.61
46793736--46793775	10	3.8	10	81	12	53	57	5	0	37	1.21
46801837--46802012	50	3.4	50	81	4	190	23	28	21	26	1.99
46802326--46802384	30	2.0	30	86	0	82	33	23	3	38	1.72
46807705--46807749	20	2.1	22	84	12	58	13	13	8	64	1.49
46807781--46807823	21	2.0	23	81	9	54	32	13	9	44	1.76
46809792--46809836	20	2.1	22	84	12	58	13	13	8	64	1.49
46809868--46809910	21	2.0	23	81	9	54	32	13	9	44	1.76
46812334--46812376	21	2.0	23	81	9	54	44	9	13	32	1.76
46818588--46818642	27	2.0	27	96	0	101	29	20	16	34	1.94
46834447--46834481	17	2.1	17	94	0	61	37	20	11	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46837246--46837528	49	5.7	49	78	4	262	26	15	26	30	1.96
46844473--46844502	16	1.9	16	93	6	53	30	0	20	50	1.49
46846282--46846445	86	1.9	86	84	2	222	32	17	14	35	1.90
46847014--46847054	20	2.0	21	85	4	57	34	0	24	41	1.55
46857155--46857659	139	3.6	137	85	4	663	45	4	7	41	1.53
46857640--46857785	76	1.9	75	94	2	258	30	15	8	45	1.77
46859023--46859057	15	2.2	15	90	10	52	71	2	5	20	1.19
46859238--46859446	104	2.0	105	98	0	402	40	15	13	30	1.86
46872374--46872566	50	3.7	50	81	4	206	27	21	27	22	1.99
46872815--46872853	4	9.8	4	82	0	51	51	2	23	23	1.61
46872816--46872854	20	2.0	20	94	0	69	53	2	23	20	1.57
46874412--46874603	50	3.7	50	77	6	163	28	22	24	24	1.99
46874803--46874841	4	9.8	4	82	0	51	51	2	23	23	1.61
46874804--46874842	20	2.0	20	94	0	69	53	2	23	20	1.57
46876073--46876111	12	3.2	12	85	0	51	51	5	23	20	1.67
46877343--46877381	12	3.2	12	85	0	51	51	5	23	20	1.67
46877939--46877977	12	3.2	12	85	0	51	51	5	23	20	1.67
46877262--46879015	596	2.9	595	96	0	3193	34	11	20	33	1.88
46878536--46878574	20	2.0	20	94	0	69	58	2	23	15	1.49
46882212--46882314	51	2.0	51	88	0	152	46	11	20	21	1.82
46884331--46884673	40	8.6	40	91	2	485	24	20	27	27	1.99
46892411--46892620	40	5.3	39	89	4	242	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46892358--46892620	120	2.2	120	82	4	309	25	21	27	25	1.99
46892359--46892655	80	3.7	80	81	6	230	26	21	27	24	1.99
46911617--46911663	21	2.2	21	85	7	60	10	21	31	36	1.88
46912627--46912652	7	3.7	7	100	0	52	57	15	0	26	1.38
46912821--46912858	20	1.9	20	84	10	51	55	7	2	34	1.43
46913762--46913795	17	2.1	16	88	5	50	67	0	0	32	0.91
46913791--46913891	51	2.0	52	84	5	134	45	0	26	26	1.60
46913850--46913893	11	3.9	11	83	16	63	43	0	29	27	1.55
46913850--46913892	12	3.8	12	87	9	63	41	0	30	27	1.56
46915138--46915293	9	16.4	9	69	18	68	64	0	4	30	1.18
46915159--46915226	21	3.1	22	83	10	70	61	0	2	35	1.11
46915258--46915282	8	3.1	8	100	0	50	64	0	12	24	1.27
46915566--46915687	9	12.8	9	66	20	52	29	2	2	65	1.18
46915520--46915600	19	4.3	19	75	9	76	25	6	3	64	1.34
46919265--46919367	40	2.6	40	80	10	113	31	6	22	39	1.80
46919568--46919653	38	2.2	39	81	2	93	24	19	13	41	1.88
46919612--46919825	45	4.9	44	79	9	215	21	18	19	41	1.90
46919568--46919832	45	6.4	39	74	14	172	21	17	18	42	1.89
46919568--46919834	83	3.2	84	76	13	239	21	17	18	42	1.89
46922188--46922232	19	2.4	18	78	10	54	24	0	4	71	1.05
46924466--46924495	13	2.3	13	94	0	51	40	23	0	36	1.55
46931429--46931497	35	1.9	36	94	2	122	27	2	17	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46932760--46932845	33	2.6	33	80	8	104	48	17	8	25	1.74
46932821--46932897	14	5.0	15	71	20	52	42	15	9	32	1.78
46932837--46932876	20	2.0	20	90	0	62	50	12	10	27	1.72
46932825--46932891	34	1.9	35	90	3	109	46	13	8	31	1.74
46932860--46932899	14	2.9	14	84	0	53	42	17	7	32	1.77
46933224--46933257	17	2.0	17	88	0	50	58	0	0	41	0.98
46934415--46934454	11	3.6	11	86	0	53	67	10	5	17	1.37
46934415--46934472	22	2.7	22	81	2	55	67	12	3	17	1.36
46935868--46935900	17	1.9	17	88	11	50	57	0	3	39	1.14
46936380--46936407	9	3.1	9	100	0	56	46	10	10	32	1.73
46938858--46938884	14	1.9	14	100	0	54	88	3	7	0	0.61
46939962--46940223	39	6.7	40	87	7	337	25	22	27	24	2.00
46942071--46942121	24	2.2	24	86	10	70	31	3	7	56	1.46
46942152--46942320	69	2.4	67	79	11	171	34	7	3	54	1.46
46942205--46942271	13	5.7	12	73	21	61	37	8	1	52	1.42
46942149--46942307	45	3.5	46	81	6	171	35	7	3	54	1.45
46942202--46942375	70	2.5	68	80	6	183	36	6	2	53	1.43
46942149--46942375	24	9.8	23	73	14	164	35	7	3	53	1.45
46942644--46942675	12	2.7	12	95	0	55	28	0	6	65	1.16
46943234--46943259	13	2.0	13	100	0	52	23	15	23	38	1.92
46945598--46945641	16	2.7	16	78	3	52	25	20	20	34	1.97
46945681--46945758	17	4.6	17	77	0	57	32	21	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46945721--46945770	17	2.9	17	81	0	64	30	16	20	34	1.94
46945872--46945914	17	2.4	18	80	7	52	27	18	11	41	1.85
46947121--46947157	18	2.1	18	100	0	74	10	10	35	43	1.75
46957308--46957352	23	2.0	23	100	0	90	17	22	26	33	1.96
46958964--46959099	40	3.5	39	77	7	150	34	24	16	25	1.95
46959885--46959950	10	6.2	10	74	17	53	6	19	3	71	1.21
46959949--46960014	26	2.6	26	83	9	75	37	3	1	57	1.23
46961754--46961878	53	2.4	52	84	2	151	36	14	22	26	1.92
46965848--46965911	30	2.1	30	97	0	119	31	12	26	29	1.93
46967386--46967463	27	2.8	29	79	11	76	25	15	28	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182