genome.fa.s21.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  162  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49817592--49818219	329	1.9	323	83	6	798	26	9	21	42	1.83
49817924--49818437	217	2.4	216	81	10	532	27	9	22	41	1.85
49823382--49823417	7	5.1	7	100	0	72	13	41	13	30	1.84
49824535--49824612	40	2.0	40	89	5	122	26	28	0	44	1.54
49826135--49826978	422	2.0	422	99	0	1679	36	19	9	34	1.84
49826655--49827248	222	2.7	218	87	9	717	42	18	2	36	1.64
49826826--49827248	206	2.0	206	90	5	658	43	17	2	36	1.63
49827416--49827478	24	2.5	26	80	17	78	31	3	0	65	1.09
49827417--49827478	25	2.4	27	86	10	94	32	3	0	64	1.09
49827417--49827477	26	2.4	26	89	8	81	32	3	0	63	1.10
49833642--49833676	14	2.5	14	90	0	52	34	17	5	42	1.73
49834854--49834888	14	2.5	14	95	0	61	45	2	5	45	1.41
49834831--49834998	62	2.7	62	96	0	309	48	10	5	35	1.61
49840962--49840998	3	12.3	3	100	0	74	67	0	0	32	0.91
49842836--49842880	21	2.2	21	88	7	67	28	4	0	66	1.11
49843117--49843167	26	2.0	26	100	0	102	41	3	3	50	1.39
49843882--49843933	24	2.2	24	89	0	77	57	3	9	28	1.48
49855569--49855615	22	2.1	21	84	7	58	70	2	8	19	1.24
49860941--49861031	37	2.5	37	83	1	112	41	31	10	15	1.82
49868666--49868692	3	9.0	3	100	0	54	33	0	0	66	0.92
49869748--49869774	4	6.8	4	100	0	54	22	0	0	77	0.76
49877428--49877469	15	2.9	15	79	10	52	42	4	4	47	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49882744--49882803	24	2.5	24	83	5	77	28	8	0	63	1.23
49882760--49882807	3	16.0	3	86	0	69	29	4	0	66	1.10
49883010--49883038	13	2.3	13	94	5	51	17	0	13	68	1.20
49886950--49887031	26	3.2	26	82	0	92	40	3	21	34	1.71
49886950--49887031	13	6.3	13	73	0	74	40	3	21	34	1.71
49887056--49887112	27	2.2	25	84	6	69	43	5	17	33	1.71
49887064--49887121	25	2.2	27	84	6	75	39	1	18	39	1.61
49890125--49890180	13	4.3	13	93	0	85	32	10	21	35	1.88
49890108--49890180	39	1.9	37	88	5	110	28	10	23	36	1.89
49898842--49898890	21	2.2	22	80	16	57	22	34	24	18	1.96
49905423--49905473	25	2.0	25	96	0	93	35	7	11	45	1.70
49905423--49905492	25	2.8	25	87	6	81	37	8	11	42	1.72
49906044--49906133	37	2.4	38	83	1	119	31	41	11	16	1.83
49910670--49910717	24	2.0	24	84	15	64	31	0	16	52	1.45
49917623--49917687	24	2.8	23	81	9	78	72	3	4	20	1.16
49917671--49917719	6	8.5	6	91	6	75	85	2	0	12	0.68
49919462--49919540	35	2.2	36	84	11	99	29	11	16	43	1.83
49920475--49920544	31	2.2	32	82	5	79	38	7	7	47	1.59
49920466--49920544	31	2.5	31	79	4	77	39	6	7	46	1.58
49920655--49920718	30	2.1	31	83	11	80	51	9	6	32	1.59
49926171--49926221	5	10.0	5	97	2	93	58	1	0	39	1.09
49927651--49927764	37	3.1	37	62	14	92	29	5	23	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49927619--49927764	72	2.0	72	97	0	274	30	5	21	42	1.76
49930755--49930812	27	2.1	27	100	0	116	36	31	17	15	1.91
49941075--49941112	16	2.5	15	87	8	51	55	0	7	36	1.29
49944566--49944604	20	2.0	20	89	0	60	30	10	10	48	1.70
49946108--49946150	21	2.0	21	90	0	68	44	27	13	13	1.83
49946377--49946783	162	2.4	170	76	10	397	36	23	5	34	1.79
49948556--49948588	12	2.5	13	90	9	50	39	0	9	51	1.34
49952073--49952223	33	4.7	33	76	9	134	19	22	12	45	1.84
49952427--49952533	51	2.1	51	89	3	162	29	26	10	33	1.89
49959293--49959363	28	2.4	30	79	11	85	30	1	7	60	1.32
49963441--49963549	44	2.6	41	74	17	98	44	0	4	50	1.29
49963474--49963771	27	10.4	28	68	19	143	41	1	2	54	1.23
49963593--49963743	17	9.0	17	66	21	70	41	1	2	54	1.22
49963391--49963880	117	4.3	117	94	3	831	42	1	3	52	1.29
49963827--49963860	17	2.0	17	100	0	68	41	0	0	58	0.98
49963827--49963874	15	3.0	15	81	9	51	41	2	0	56	1.11
49964007--49964114	46	2.5	43	85	11	143	36	30	3	29	1.75
49964024--49964115	46	2.0	44	91	4	148	39	29	4	27	1.76
49966830--49966882	26	2.0	26	96	0	97	54	5	0	39	1.24
49969265--49969384	43	2.8	43	77	9	118	30	31	19	18	1.95
49992221--49992252	16	2.0	16	93	0	55	15	3	0	81	0.82
49994584--49994621	18	2.2	18	85	4	51	68	2	7	21	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49994611--49994728	9	13.2	9	71	11	64	61	1	11	25	1.38
49994619--49994716	3	33.7	3	73	6	67	62	2	8	27	1.35
49999021--49999051	3	10.3	3	100	0	62	0	32	0	67	0.91
49999353--49999420	29	2.3	29	80	10	75	30	5	1	61	1.28
50009208--50009232	8	3.1	8	100	0	50	24	0	12	64	1.27
50012356--50012387	15	2.1	15	94	0	55	15	6	9	68	1.36
50016748--50016783	17	2.1	17	89	0	54	38	2	5	52	1.39
50016776--50016829	25	2.1	26	83	10	67	40	0	7	51	1.30
50016735--50016841	20	5.8	18	67	20	51	41	0	5	52	1.31
50016820--50016935	61	1.9	59	85	3	160	40	4	5	50	1.44
50020552--50020599	20	2.4	20	82	0	60	22	33	16	27	1.96
50020591--50020633	20	2.2	20	87	8	61	11	32	23	32	1.90
50020603--50020640	20	1.9	20	94	0	67	13	28	21	36	1.91
50021358--50021415	20	2.9	20	87	7	82	41	5	20	32	1.75
50027837--50027912	29	2.6	28	80	10	89	21	19	7	51	1.72
50027837--50027916	30	2.7	31	84	5	103	22	18	7	51	1.71
50028635--50028680	23	2.0	23	82	0	56	50	15	15	19	1.79
50031724--50031751	13	2.2	13	100	0	56	42	0	7	50	1.30
50032745--50032794	24	2.1	25	85	7	68	52	6	2	40	1.38
50037598--50037791	68	2.9	66	80	11	227	37	17	22	22	1.94
50038085--50038149	30	2.2	30	88	5	96	23	6	13	56	1.59
50039122--50039178	25	2.4	23	78	18	64	57	8	1	31	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50039219--50039281	30	2.1	30	96	0	117	57	15	3	23	1.53
50039854--50039991	69	2.0	69	98	0	267	28	10	10	50	1.70
50042028--50042052	7	3.6	7	100	0	50	28	0	0	72	0.86
50048496--50048953	227	2.0	227	99	0	907	41	16	17	24	1.89
50053463--50053503	14	2.8	14	88	7	55	0	12	0	87	0.53
50053463--50053496	16	2.2	15	94	5	59	0	8	0	91	0.43
50053465--50053494	10	2.9	10	95	5	51	0	10	0	90	0.47
50053463--50053503	12	3.4	12	80	19	50	0	12	0	87	0.53
50053463--50053513	23	2.2	23	82	10	59	0	15	1	82	0.76
50054458--50054497	21	1.9	21	84	0	53	30	45	0	25	1.54
50062844--50062883	21	1.9	21	100	0	80	5	22	30	42	1.75
50066713--50066747	15	2.4	15	90	4	54	48	0	8	42	1.33
50069229--50069266	18	2.1	18	100	0	76	44	0	10	44	1.38
50069552--50069644	25	3.7	26	71	9	84	21	20	22	35	1.96
50073505--50073542	18	2.1	18	100	0	76	44	0	10	44	1.38
50073828--50073920	25	3.7	26	71	9	84	21	20	22	35	1.96
50078478--50078529	20	2.5	20	82	14	70	46	7	1	44	1.43
50081274--50081351	21	3.7	21	72	6	68	19	10	30	39	1.85
50081265--50081358	42	2.2	42	90	0	152	20	11	32	35	1.89
50083424--50083453	15	2.0	15	93	0	51	40	23	6	30	1.80
50083608--50083809	44	4.8	44	69	16	176	39	19	7	32	1.81
50083615--50083773	76	2.1	76	92	2	266	40	21	8	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50083691--50083808	46	2.6	44	81	4	146	40	20	7	31	1.80
50084198--50084233	11	3.1	11	85	14	54	33	8	11	47	1.69
50084198--50084235	13	3.1	13	92	7	62	31	7	13	47	1.71
50086569--50086661	39	2.5	37	80	7	98	27	29	22	20	1.98
50087016--50087069	3	18.0	3	92	0	90	62	1	0	35	1.06
50087792--50087831	19	2.2	19	90	4	64	15	12	0	72	1.12
50087983--50088037	5	11.2	5	74	18	53	58	1	0	40	1.09
50087981--50088033	27	2.0	25	89	7	79	54	1	0	43	1.11
50089362--50089463	39	2.7	36	73	13	96	39	4	1	53	1.33
50103069--50103121	26	2.1	25	89	3	79	49	1	3	45	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182