genome.fa.s21.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  161  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49560558--49560862	137	2.2	137	86	2	425	29	20	18	31	1.97
49560110--49561890	45	40.1	44	70	13	663	28	22	18	31	1.97
49560289--49561085	360	2.2	359	88	2	1186	28	20	18	31	1.97
49560654--49561215	223	2.5	223	85	2	705	29	21	18	30	1.97
49561015--49561613	86	6.8	85	79	9	483	28	23	18	30	1.97
49561016--49561781	268	2.9	262	84	4	900	28	23	17	30	1.97
49561495--49561890	178	2.2	178	89	0	596	27	23	18	31	1.97
49563139--49563234	49	1.9	50	95	2	176	12	22	22	41	1.88
49564158--49564195	18	2.2	18	90	4	60	0	21	0	78	0.74
49564213--49564281	31	2.2	30	87	12	104	23	2	2	71	1.14
49564214--49564281	32	2.2	31	92	7	111	22	2	2	72	1.12
49568187--49568225	4	9.8	4	100	0	78	25	0	23	51	1.49
49569201--49569225	7	3.6	7	100	0	50	0	16	0	84	0.63
49575155--49575235	28	2.9	28	92	1	137	32	13	16	38	1.87
49579280--49579395	44	2.6	44	74	8	119	23	25	22	29	1.99
49579410--49579614	44	4.6	45	76	6	141	30	22	17	29	1.96
49579176--49579715	218	2.5	217	86	0	695	28	22	18	29	1.98
49579711--49580349	128	4.9	128	86	3	693	26	24	18	30	1.98
49579711--49580349	132	4.9	129	84	5	688	26	24	18	30	1.98
49581575--49581608	15	2.3	15	94	0	59	14	8	0	76	1.01
49585310--49585504	108	1.8	106	88	4	302	35	16	16	30	1.92
49586434--49586536	3	34.3	3	83	3	109	61	2	5	30	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49592494--49592535	17	2.4	18	80	15	52	69	2	4	23	1.20
49592541--49592565	5	5.0	5	100	0	50	80	0	0	20	0.72
49592777--49592809	16	2.1	16	88	11	50	48	0	0	51	1.00
49594389--49594454	8	7.5	8	76	15	51	65	1	1	31	1.11
49594377--49594458	37	2.2	37	83	10	105	68	1	1	29	1.05
49594377--49594495	10	12.4	10	70	15	56	64	2	1	31	1.16
49594803--49594854	19	2.7	20	80	14	63	26	7	3	61	1.41
49594878--49594939	28	2.3	27	83	8	72	37	0	1	61	1.06
49595920--49595973	17	3.1	17	81	10	56	31	0	0	68	0.90
49598337--49598422	24	3.6	24	98	0	163	32	41	4	20	1.73
49599540--49599602	31	2.0	31	93	0	108	15	4	20	58	1.55
49603263--49603387	12	9.8	12	69	17	56	52	8	13	26	1.68
49603271--49603387	25	4.6	25	74	17	87	52	8	13	25	1.69
49603330--49603394	14	4.6	14	75	7	60	55	7	12	24	1.63
49603383--49603422	21	1.9	21	85	10	55	65	7	12	15	1.47
49604706--49604763	6	9.3	6	82	14	55	74	0	3	22	0.97
49604707--49604763	19	3.1	18	78	16	55	73	0	3	22	0.98
49608191--49608316	12	9.8	12	68	13	63	52	7	14	25	1.68
49608259--49608316	14	4.2	13	76	12	53	56	6	13	22	1.61
49609130--49609184	27	2.0	26	82	6	65	40	3	3	52	1.36
49612490--49612524	15	2.3	15	100	0	70	42	28	0	28	1.56
49625401--49625446	14	3.5	14	71	17	53	65	0	4	30	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49625429--49625472	23	1.9	23	86	9	63	61	2	6	29	1.34
49625445--49625483	16	2.4	17	91	4	62	58	7	5	28	1.47
49627668--49627721	18	3.0	18	86	5	74	35	9	0	55	1.32
49627843--49627899	30	1.9	29	92	3	96	35	12	1	50	1.50
49631093--49631133	21	1.9	22	85	5	57	29	21	0	48	1.50
49633872--49634414	50	10.9	49	70	7	340	32	23	20	23	1.97
49633872--49634443	100	5.7	100	87	0	748	33	23	20	23	1.98
49635676--49635706	16	1.9	16	93	0	53	19	6	0	74	1.03
49640873--49640903	16	1.9	16	93	0	53	0	9	3	87	0.66
49641533--49641579	18	2.7	17	78	12	51	36	6	2	55	1.37
49650189--49650230	18	2.3	18	91	0	66	47	7	16	28	1.73
49661972--49662047	30	2.4	33	82	8	86	52	3	0	43	1.19
49663297--49663339	19	2.3	19	80	11	52	23	16	0	60	1.35
49665928--49666280	105	3.4	105	83	2	460	37	13	16	32	1.87
49670978--49671220	50	4.9	49	86	2	315	21	30	21	26	1.98
49672044--49672069	13	2.0	13	100	0	52	15	7	15	61	1.55
49678607--49678854	50	4.8	50	81	5	246	22	28	20	27	1.99
49679678--49679703	13	2.0	13	100	0	52	15	7	15	61	1.55
49680704--49680946	50	4.9	49	86	2	315	21	30	20	26	1.98
49682234--49682276	21	2.0	21	100	0	86	51	23	9	16	1.73
49688017--49688218	109	1.9	109	82	4	255	32	14	24	29	1.94
49691403--49691479	33	2.3	33	84	4	93	35	18	22	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49698145--49698546	27	15.0	27	83	2	427	19	16	20	44	1.87
49702477--49702543	32	2.1	32	94	0	116	34	16	4	44	1.68
49703913--49704071	42	3.7	43	75	13	157	27	16	23	32	1.96
49703913--49704071	43	3.7	43	77	10	173	27	16	23	32	1.96
49706542--49706757	52	4.2	52	98	1	407	31	0	1	66	1.03
49711049--49711207	42	3.7	43	75	13	157	27	16	23	32	1.96
49711049--49711207	43	3.7	43	77	10	173	27	16	23	32	1.96
49715408--49715456	24	2.0	26	84	8	66	61	10	8	20	1.53
49717796--49717835	13	2.9	14	82	17	57	67	5	7	20	1.34
49718553--49718608	24	2.4	24	87	3	78	58	1	5	33	1.31
49720043--49720160	44	2.7	44	81	5	123	27	19	20	32	1.97
49720538--49721171	169	3.8	169	88	2	880	29	26	15	29	1.96
49721965--49721989	12	2.1	12	100	0	50	36	8	32	24	1.84
49725329--49725402	30	2.5	30	100	0	148	41	9	9	39	1.70
49725852--49726165	157	2.0	157	100	0	628	31	21	18	28	1.97
49727294--49727342	13	3.5	14	81	15	57	71	6	2	20	1.18
49728364--49728412	13	3.5	14	81	15	57	71	6	2	20	1.18
49730360--49730398	21	1.9	20	84	5	51	35	0	2	61	1.10
49742529--49742577	22	2.2	23	92	3	82	30	14	6	48	1.67
49747634--49747721	44	2.0	44	84	8	117	62	3	2	31	1.24
49747836--49747860	12	2.1	12	100	0	50	24	36	24	16	1.94
49748021--49748096	9	8.4	9	88	5	100	43	23	7	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49748021--49748096	27	2.8	27	89	0	116	43	23	7	25	1.80
49748203--49748246	18	2.4	18	88	0	61	18	2	38	40	1.63
49752168--49752255	43	2.0	43	100	0	176	51	9	9	30	1.65
49768389--49768489	24	4.2	24	76	0	85	23	16	16	42	1.88
49768361--49768500	72	1.9	72	85	2	192	26	17	17	37	1.93
49768960--49769003	23	1.9	23	90	0	70	40	25	6	27	1.80
49775497--49775658	23	6.9	23	85	4	164	45	5	27	21	1.74
49781158--49781191	16	2.1	16	100	0	68	41	5	20	32	1.76
49781161--49781204	16	2.8	16	89	0	61	45	4	13	36	1.64
49781527--49781661	25	5.4	25	91	0	207	25	26	14	33	1.95
49781654--49781711	25	2.3	25	100	0	116	25	25	17	31	1.97
49781527--49781686	50	3.2	50	88	0	203	25	26	15	33	1.95
49781527--49781712	75	2.5	75	84	0	228	25	26	15	32	1.95
49786549--49786579	6	5.2	6	100	0	62	32	16	0	51	1.44
49789119--49789236	37	3.5	37	80	13	121	33	27	10	28	1.89
49789421--49789507	41	2.1	41	93	0	147	22	27	20	28	1.99
49795489--49795566	37	2.2	35	80	12	97	33	26	10	29	1.89
49795498--49795576	37	2.1	37	88	0	113	36	24	7	31	1.83
49795785--49795953	41	4.1	41	93	0	293	23	28	20	28	1.99
49796175--49796221	17	2.8	17	83	6	60	44	14	2	38	1.58
49798558--49798597	3	13.3	3	100	0	80	35	0	0	65	0.93
49806708--49806748	20	2.1	20	90	4	66	63	0	2	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49806708--49806838	10	13.6	9	66	17	50	58	1	3	35	1.25
49806766--49806810	19	2.3	19	88	11	65	57	0	8	33	1.30
49806797--49806843	19	2.3	20	82	10	60	61	4	4	29	1.34
49807421--49807501	39	2.1	40	84	13	109	35	1	3	59	1.23
49807452--49807550	47	2.1	47	81	10	114	31	2	4	62	1.25
49807404--49807520	10	12.2	10	72	20	56	33	0	5	59	1.27
49815005--49815052	24	2.0	24	95	0	87	50	10	4	35	1.56
49817566--49817742	94	1.9	94	87	4	259	24	11	19	43	1.85
49817459--49817880	221	1.9	218	81	7	514	27	9	20	42	1.83
49817769--49818087	95	3.1	101	80	11	325	26	9	20	43	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182