genome.fa.s21.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  147  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45086908--45087224	171	1.9	171	82	1	402	30	21	22	25	1.99
45092119--45092167	25	2.0	25	88	8	73	63	0	0	36	0.95
45092138--45092183	15	2.9	17	71	15	53	67	0	0	32	0.91
45092119--45092183	23	2.8	24	81	13	64	64	0	0	35	0.94
45092903--45092960	27	2.2	26	93	3	98	25	31	25	17	1.97
45093451--45093511	19	3.3	19	74	4	61	47	1	9	40	1.46
45094011--45094068	27	2.2	26	90	3	89	18	29	29	22	1.98
45119037--45119203	32	5.4	32	67	11	105	19	13	25	41	1.88
45118993--45119240	61	4.1	61	84	0	307	18	14	25	40	1.90
45119358--45119431	30	2.5	30	91	4	114	22	17	21	37	1.94
45125231--45126487	496	2.5	491	78	5	1279	37	11	12	38	1.79
45127040--45127098	17	3.2	18	79	18	68	25	25	0	49	1.51
45127046--45127077	16	1.9	17	93	6	57	28	31	0	40	1.57
45127040--45127097	20	3.1	19	80	16	68	24	25	0	50	1.50
45132254--45132311	18	3.2	18	74	13	55	43	22	1	32	1.64
45132248--45132314	19	3.5	19	67	20	50	41	22	1	34	1.63
45142814--45142911	48	2.0	48	98	0	187	36	19	8	35	1.82
45143859--45144176	148	2.1	147	88	7	473	43	4	11	41	1.59
45145435--45145474	3	13.3	3	94	0	71	70	0	0	30	0.88
45150974--45151029	25	2.2	24	78	9	58	66	5	1	26	1.23
45150985--45151056	13	5.0	13	75	24	65	69	1	0	29	0.97
45150984--45151059	23	3.5	21	79	17	84	68	1	0	30	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45154555--45154946	196	2.0	196	98	0	757	35	20	12	31	1.90
45168274--45168358	28	3.0	27	72	11	66	31	11	2	54	1.50
45181286--45181333	24	2.0	24	83	0	60	43	8	27	20	1.80
45181430--45181532	42	2.5	42	85	0	134	15	28	18	37	1.91
45186994--45187097	42	2.5	42	82	0	118	18	25	17	39	1.92
45189194--45189223	15	2.0	15	100	0	60	40	6	13	40	1.71
45199288--45199387	23	4.3	23	80	0	101	28	18	16	38	1.91
45199286--45199387	46	2.2	46	83	0	123	28	18	15	37	1.92
45205315--45205352	16	2.3	17	86	4	51	21	0	21	57	1.40
45206942--45206978	14	2.7	15	84	16	53	72	0	10	16	1.10
45208922--45209016	32	3.1	31	71	7	77	30	7	12	49	1.68
45218076--45218366	44	6.6	44	68	12	150	28	20	18	31	1.97
45218023--45218322	44	6.7	45	72	8	141	29	21	17	32	1.96
45218162--45218332	45	3.8	46	75	9	145	29	22	17	30	1.97
45230195--45230237	4	10.8	4	94	0	77	25	0	20	53	1.46
45230535--45230593	3	19.0	3	76	13	57	62	5	1	30	1.26
45230531--45230587	28	2.1	27	90	3	87	64	5	1	28	1.25
45230535--45230602	22	3.1	22	79	10	77	63	5	2	27	1.32
45235121--45235182	20	3.1	20	64	0	52	25	17	19	37	1.94
45235120--45235234	40	2.9	40	85	2	142	26	17	16	40	1.90
45235209--45235316	43	2.5	43	86	0	153	22	19	21	37	1.95
45240031--45240059	14	2.0	15	93	6	51	10	6	13	68	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45241151--45241199	19	2.7	18	78	6	62	59	6	4	30	1.41
45244397--45244528	37	3.6	37	79	5	144	41	31	10	15	1.82
45252792--45252845	26	2.3	22	75	22	63	48	20	7	24	1.75
45258968--45259020	26	2.2	23	81	15	63	45	15	7	32	1.74
45265067--45265105	19	2.1	19	95	0	69	15	17	35	30	1.91
45265352--45265394	21	2.0	21	100	0	86	34	9	13	41	1.77
45269461--45269506	22	2.1	22	100	0	92	60	8	13	17	1.56
45271244--45271281	18	2.2	18	86	9	53	68	0	7	23	1.16
45280900--45280960	24	2.5	25	78	7	72	16	27	21	34	1.95
45291214--45291270	29	2.0	29	92	0	96	36	26	12	24	1.91
45293034--45293067	2	17.0	2	100	0	68	0	50	0	50	1.00
45299291--45299454	25	6.7	24	72	13	100	19	27	18	34	1.96
45306796--45306847	24	2.2	24	85	0	68	19	23	19	38	1.93
45306883--45306930	25	1.9	25	86	0	69	20	27	18	33	1.96
45332720--45332753	4	8.0	4	90	9	50	23	0	2	73	0.97
45332703--45332762	22	2.7	22	73	19	61	26	0	6	66	1.16
45334796--45334848	4	13.2	4	95	0	97	73	0	0	26	0.83
45335005--45335046	22	1.9	22	85	9	59	66	11	7	14	1.43
45338119--45338155	3	12.3	3	94	0	65	64	0	32	2	1.07
45348277--45348322	13	3.5	13	93	0	74	78	8	2	10	1.05
45348367--45348413	13	3.5	13	81	13	60	65	0	10	23	1.23
45348360--45348415	14	3.9	15	88	11	91	62	0	12	25	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45348360--45348414	28	2.0	28	96	3	103	61	0	12	25	1.31
45367332--45367384	23	2.2	24	77	9	56	20	20	11	47	1.81
45368874--45368920	20	2.3	20	100	0	94	25	12	19	42	1.86
45369629--45369691	22	2.7	22	90	7	90	58	1	11	28	1.41
45370860--45370924	19	3.2	19	68	16	58	24	29	29	16	1.97
45371212--45371623	205	2.0	206	98	0	799	42	14	12	30	1.82
45371639--45372036	199	2.0	200	99	0	789	36	16	17	29	1.92
45373818--45373904	42	2.1	42	100	0	174	25	19	12	42	1.86
45409265--45409388	45	2.8	45	86	2	151	21	24	24	29	1.99
45409616--45409775	50	3.2	50	68	10	146	25	24	20	30	1.99
45409595--45409783	100	1.9	100	94	0	333	26	23	19	30	1.98
45409750--45409823	36	2.1	36	100	0	148	21	21	18	37	1.94
45409650--45409923	136	2.0	136	93	1	469	24	22	21	31	1.98
45409786--45410209	99	4.3	100	91	1	683	24	23	22	30	1.99
45409990--45410138	49	3.0	49	66	12	133	24	20	23	32	1.98
45409786--45410209	199	2.1	200	92	2	719	24	23	22	30	1.99
45409852--45410210	50	7.2	50	65	5	188	24	23	22	30	1.99
45410172--45410460	117	2.5	117	82	2	357	26	26	19	26	1.99
45417050--45417102	22	2.5	21	76	11	54	58	0	5	35	1.22
45417192--45417257	30	2.1	33	83	11	84	56	4	3	36	1.35
45424246--45424307	30	2.1	31	90	6	101	33	8	11	46	1.69
45424936--45424996	25	2.4	25	78	5	61	37	3	3	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45430301--45430356	26	2.2	26	96	0	103	17	25	25	32	1.97
45437966--45438060	49	1.9	49	89	0	145	30	16	10	42	1.82
45440357--45440431	32	2.3	32	80	15	84	70	5	4	20	1.23
45440385--45440448	27	2.4	27	86	5	85	73	3	7	15	1.19
45440385--45440462	27	2.8	26	83	9	84	73	3	7	15	1.21
45449081--45449125	22	2.0	22	95	0	81	26	13	24	35	1.92
45456290--45456325	11	3.2	12	85	14	51	55	0	0	44	0.99
45460071--45460815	110	6.7	108	83	5	870	32	12	21	33	1.91
45460071--45460815	220	3.4	220	87	3	989	32	12	21	33	1.91
45460090--45460815	330	2.2	329	85	4	960	32	12	21	33	1.91
45466892--45466922	16	1.9	16	93	0	53	38	12	12	35	1.82
45481575--45481603	3	9.7	3	100	0	58	0	0	31	68	0.89
45489489--45489527	14	2.9	14	92	3	62	20	17	7	53	1.68
45496495--45496631	46	3.0	46	89	0	202	25	31	8	34	1.86
45496605--45496748	47	3.1	47	91	0	225	27	29	9	34	1.87
45496670--45496749	25	3.3	25	68	16	69	31	27	6	35	1.82
45502976--45503025	26	1.9	26	88	8	75	80	4	12	4	1.00
45504797--45504850	28	1.9	28	96	0	99	29	24	5	40	1.77
45505472--45505524	4	13.2	4	82	7	54	71	1	3	22	1.12
45511037--45511111	37	2.0	37	89	5	116	17	29	17	36	1.93
45513802--45513832	14	2.2	14	94	0	53	19	22	9	48	1.78
45516688--45516714	8	3.4	8	100	0	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45520302--45520341	9	4.4	9	96	0	71	42	35	2	20	1.65
45522021--45522047	8	3.4	8	100	0	54	77	0	0	22	0.76
45529887--45529922	18	1.9	18	88	5	54	47	5	22	25	1.73
45536197--45536271	22	3.3	22	65	17	62	52	6	14	26	1.67
45536192--45536290	47	2.1	47	92	0	162	48	7	14	30	1.70
45537804--45538466	50	13.3	50	70	3	456	23	20	24	31	1.98
45537804--45538488	100	6.8	100	88	0	983	24	20	24	31	1.98
45539758--45539802	20	2.3	19	81	11	54	13	11	0	75	1.05
45540655--45540694	6	6.7	6	88	8	55	15	0	15	70	1.18
45540590--45540682	44	2.1	44	86	9	127	11	11	6	69	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182