genome.fa.s21.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  96  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29061815--29061930	44	2.6	45	87	1	162	34	17	7	40	1.78
29065430--29065477	13	3.6	14	78	15	50	22	12	14	50	1.77
29067064--29067173	31	3.5	30	77	15	98	32	27	2	37	1.71
29067169--29067230	32	1.9	33	83	3	81	41	30	0	27	1.56
29067608--29067641	11	3.0	11	91	4	50	11	0	14	73	1.10
29069403--29069452	16	3.0	16	78	18	57	66	2	2	30	1.14
29069403--29069453	17	3.0	16	76	21	50	66	1	1	29	1.13
29069581--29069615	18	1.9	18	88	0	52	48	0	0	51	1.00
29069902--29069944	21	2.0	22	82	13	54	41	2	2	53	1.26
29071178--29071202	3	8.3	3	100	0	50	32	0	36	32	1.58
29074134--29074200	31	2.2	29	76	10	73	34	11	8	44	1.73
29076338--29076389	13	4.1	13	72	22	56	59	9	11	19	1.59
29076782--29076826	18	2.5	18	82	7	56	40	17	4	37	1.70
29079654--29079697	11	3.8	11	80	11	52	31	0	4	63	1.14
29081502--29081562	2	30.5	2	100	0	122	0	0	49	50	1.00
29081741--29081866	33	3.8	32	74	12	112	30	16	26	25	1.97
29083003--29083058	25	2.2	25	78	6	60	60	7	8	23	1.51
29082858--29083421	206	2.8	206	91	3	912	40	10	14	34	1.81
29088684--29089611	464	2.0	464	98	0	1811	21	32	20	24	1.98
29099236--29099376	40	3.5	40	92	0	228	30	21	21	26	1.98
29099650--29099680	2	15.5	2	93	0	53	45	0	0	54	0.99
29100540--29100570	2	15.5	2	93	0	53	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29100797--29100827	14	2.2	14	94	0	53	45	3	0	51	1.17
29100614--29101159	273	2.0	274	98	0	1049	40	4	15	39	1.69
29101648--29101712	32	2.1	32	91	5	107	50	3	24	21	1.63
29101674--29101799	57	2.2	57	90	5	193	50	6	15	27	1.69
29106786--29106815	11	2.7	11	89	0	51	50	0	0	50	1.00
29109191--29109236	18	2.6	18	89	0	74	34	10	15	39	1.82
29114832--29114995	62	2.7	63	83	7	219	21	27	27	23	1.99
29121786--29121928	62	2.3	62	86	4	200	20	29	24	25	1.99
29125016--29125061	18	2.5	20	83	16	64	32	4	23	39	1.75
29126575--29126691	54	2.2	54	84	3	146	28	24	25	21	1.99
29127764--29127799	2	18.0	2	100	0	72	50	0	50	0	1.00
29128770--29128801	3	10.7	3	100	0	64	68	0	0	31	0.90
29133086--29133135	21	2.4	22	71	21	52	44	2	4	50	1.32
29134397--29134557	33	4.8	32	71	8	124	28	26	16	28	1.97
29137294--29137336	8	5.2	8	78	15	52	72	2	2	23	1.08
29137294--29137340	17	2.8	18	78	12	55	70	2	2	25	1.10
29137285--29137355	15	4.5	15	75	14	54	66	5	1	26	1.22
29137348--29137412	21	3.1	20	78	10	67	61	6	3	29	1.35
29137480--29137512	3	11.0	3	100	0	66	66	0	0	33	0.92
29139108--29139165	26	2.1	29	84	12	77	55	12	8	24	1.64
29145077--29145401	112	3.0	111	87	4	421	35	16	16	32	1.91
29145423--29145460	20	1.9	20	84	10	51	57	2	13	26	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29145528--29145613	4	20.8	4	73	19	61	72	5	3	18	1.20
29145727--29145760	18	1.9	18	88	5	52	52	0	14	32	1.42
29145680--29145849	90	2.0	88	85	9	233	50	1	9	39	1.43
29146914--29146954	12	3.4	12	89	0	64	12	7	51	29	1.66
29147506--29148126	44	13.7	44	71	12	242	28	21	17	32	1.96
29147498--29147793	98	3.0	98	98	0	565	30	20	14	35	1.92
29147786--29148259	131	3.6	128	78	8	433	27	22	19	30	1.98
29147715--29148172	44	10.4	44	73	10	269	27	22	19	30	1.98
29154184--29154589	112	3.7	112	93	3	639	35	17	16	30	1.92
29154642--29154679	20	1.9	20	84	10	51	57	2	13	26	1.49
29154780--29154829	22	2.3	21	79	3	55	70	6	4	20	1.25
29154917--29154950	18	1.9	18	88	5	52	52	0	14	32	1.42
29155578--29155636	30	2.0	30	90	6	93	59	0	1	38	1.08
29155578--29155629	10	5.1	10	75	13	52	55	0	1	42	1.10
29155591--29155674	38	2.2	38	95	0	150	63	0	3	33	1.12
29156490--29156530	12	3.4	12	86	0	55	12	7	48	31	1.68
29157731--29157758	2	14.0	2	100	0	56	50	0	0	50	1.00
29161977--29162035	29	2.0	29	100	0	118	38	20	13	27	1.90
29162031--29162088	29	2.0	29	100	0	116	34	13	24	27	1.93
29165754--29165822	35	2.0	35	88	2	104	37	23	5	33	1.79
29175310--29175355	23	2.0	24	86	4	67	26	21	4	47	1.69
29175767--29175878	21	5.5	21	75	12	81	14	14	39	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29176581--29176629	25	1.9	25	83	4	62	46	10	10	32	1.71
29176540--29176852	136	2.3	135	90	2	495	45	25	7	22	1.77
29178743--29178880	62	2.2	62	88	0	204	48	21	7	22	1.75
29179175--29179210	16	2.2	17	95	5	65	58	25	0	16	1.38
29179128--29179204	40	2.0	39	87	5	111	58	16	3	20	1.54
29179620--29179660	21	2.0	21	90	0	64	29	26	12	31	1.92
29179697--29179762	30	2.2	30	84	10	82	22	12	18	46	1.81
29180406--29180469	29	2.2	31	75	16	73	45	1	6	46	1.37
29183322--29183363	22	1.9	22	85	9	59	52	16	0	30	1.44
29187863--29187891	3	9.7	3	100	0	58	0	65	0	34	0.93
29195908--29196025	42	2.8	42	76	2	121	20	21	16	42	1.89
29196000--29196103	42	2.5	42	79	3	95	14	26	21	37	1.92
29206927--29206962	18	1.9	18	88	5	54	16	25	0	58	1.38
29206926--29206963	13	3.1	12	85	14	51	15	23	0	60	1.35
29213089--29213156	33	2.1	33	100	0	136	35	5	14	44	1.70
29214864--29214896	14	2.3	15	89	5	50	69	6	0	24	1.10
29216472--29216526	21	2.5	22	78	18	62	36	3	7	52	1.47
29217062--29217100	20	2.0	20	89	0	60	30	2	0	66	1.05
29217098--29217133	19	1.9	18	88	5	54	55	0	0	44	0.99
29219349--29219501	49	3.1	49	79	0	162	19	26	24	29	1.99
29226555--29226626	36	2.0	36	91	5	119	23	22	8	45	1.79
29227754--29227779	13	2.0	13	100	0	52	61	30	0	7	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29239170--29239288	43	2.8	42	76	7	123	36	26	13	24	1.92
29240414--29240438	13	1.9	13	100	0	50	40	24	4	32	1.73
29250339--29250498	41	3.7	40	77	18	151	33	1	0	63	1.10
29250333--29250492	49	3.2	49	75	15	143	31	1	0	66	1.07
29250397--29250445	11	4.5	11	76	23	59	34	2	0	63	1.06
29250397--29250480	21	4.1	21	69	25	65	34	2	0	63	1.08
29250378--29250449	9	7.6	9	73	17	65	30	1	0	68	0.99
29250407--29250498	39	2.3	42	88	11	147	34	2	1	61	1.15
29250418--29250471	28	1.9	28	81	7	65	35	3	0	61	1.14
29250356--29250492	49	2.7	49	81	10	161	33	2	0	63	1.12
29251344--29251392	25	2.0	25	88	8	73	22	22	16	38	1.92
29256487--29256534	19	2.5	19	83	9	62	27	2	0	70	0.98
29256493--29256536	14	3.3	13	84	12	54	25	2	0	72	0.96
29260376--29260418	3	14.0	3	81	13	52	27	2	0	69	1.00
29262339--29262530	50	3.8	50	85	1	242	26	22	30	21	1.99
29264681--29264738	6	9.8	6	71	17	50	20	0	1	77	0.86
29264686--29264728	9	4.8	9	91	8	70	20	0	2	76	0.89
29269660--29269698	18	2.2	18	95	0	69	28	2	10	58	1.44
29269911--29269946	7	5.1	7	89	0	54	2	52	0	44	1.15
29272973--29273261	142	2.0	142	98	0	560	27	14	16	41	1.87
29273289--29273449	77	2.1	77	97	0	304	34	8	15	41	1.78
29274417--29274454	11	3.5	11	100	0	76	47	26	0	26	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29277144--29277185	15	2.7	16	82	14	52	45	0	2	52	1.13
29277554--29277589	16	2.2	16	100	0	72	38	36	0	25	1.56
29280345--29280396	25	2.1	25	85	0	68	5	25	15	53	1.63
29280935--29280969	17	2.0	18	88	5	54	71	0	0	28	0.86
29283873--29283935	21	3.0	20	75	6	63	15	22	14	47	1.81
29283878--29283977	42	2.4	42	86	3	130	18	22	16	44	1.87
29287689--29287898	32	6.7	32	76	8	182	44	15	9	30	1.77
29287737--29287876	64	2.2	62	93	3	237	42	15	9	32	1.78
29305678--29305824	43	3.4	44	77	5	149	29	15	22	31	1.95
29308605--29308657	23	2.3	23	84	12	81	30	24	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182