genome.fa.s21.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  142  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43628968--43629077	26	4.2	26	94	2	168	36	23	4	35	1.76
43629073--43629104	10	3.2	10	95	0	55	31	6	9	53	1.58
43637713--43637835	33	3.7	33	76	8	101	30	21	26	21	1.98
43637849--43637960	45	2.5	45	86	0	152	38	16	23	21	1.93
43637845--43638109	46	5.8	46	87	0	264	40	15	22	21	1.90
43637935--43638181	46	5.3	46	86	1	298	41	13	23	21	1.88
43640908--43640972	29	2.2	31	83	10	82	35	0	3	61	1.12
43640950--43640974	8	3.1	8	100	0	50	24	0	0	76	0.80
43644655--43644682	14	2.0	14	100	0	56	57	14	7	21	1.61
43651540--43651636	40	2.5	38	72	6	95	35	37	12	15	1.85
43652980--43653010	15	2.1	15	100	0	62	35	19	12	32	1.90
43660133--43660201	34	2.0	34	97	0	129	37	40	10	11	1.75
43665728--43665809	29	2.8	29	83	0	83	58	2	4	34	1.32
43665756--43665807	19	2.7	18	78	21	52	61	3	1	32	1.25
43667365--43667422	30	2.0	29	82	3	71	56	3	0	39	1.16
43671442--43671507	25	2.7	24	76	9	62	30	3	4	62	1.30
43671695--43671791	26	3.8	24	78	12	86	24	4	9	61	1.44
43671710--43671784	26	2.9	26	82	11	91	25	4	6	64	1.36
43673465--43673527	30	2.1	30	88	11	94	57	11	4	26	1.53
43675741--43675797	13	4.5	13	74	14	57	68	10	3	17	1.33
43685089--43685160	36	2.0	36	97	0	135	37	2	20	38	1.68
43686308--43686463	43	3.6	43	81	3	154	26	17	30	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43692211--43692371	46	3.3	49	76	11	152	26	16	28	28	1.97
43708780--43708806	2	13.5	2	100	0	54	48	0	0	51	1.00
43711444--43711520	27	2.9	27	92	0	118	29	19	12	37	1.89
43711438--43711529	27	3.4	27	80	5	105	30	19	15	34	1.93
43717759--43717851	18	5.2	18	86	0	123	27	19	16	36	1.93
43726522--43726554	6	5.5	6	100	0	66	0	15	69	15	1.19
43730181--43730222	23	1.9	21	85	9	57	33	0	30	35	1.58
43731623--43731691	22	3.2	21	77	18	54	71	5	13	10	1.31
43733338--43733379	20	2.2	19	86	4	57	73	0	9	16	1.08
43735116--43735253	39	3.5	39	92	2	224	23	20	30	25	1.98
43735115--43735259	78	1.9	78	92	2	247	23	22	29	24	1.99
43738657--43738688	16	2.0	16	100	0	64	43	18	6	31	1.75
43741273--43741434	43	3.8	42	74	12	125	32	27	18	20	1.96
43741282--43741385	42	2.4	43	83	1	129	31	26	17	24	1.97
43743759--43743792	17	1.9	17	88	5	50	41	8	8	41	1.67
43767299--43767326	14	2.0	14	100	0	56	57	0	7	35	1.26
43768966--43769019	23	2.4	22	82	11	65	61	12	1	24	1.42
43780075--43780284	28	7.5	28	92	1	334	25	14	28	31	1.94
43780047--43780284	56	4.2	56	93	3	374	25	14	28	31	1.94
43780047--43780284	84	2.8	83	88	2	334	25	14	28	31	1.94
43806992--43807059	30	2.2	31	84	2	84	25	19	8	47	1.78
43822895--43823258	47	7.7	47	95	0	638	32	8	30	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43823377--43823455	37	2.1	37	90	0	122	24	18	31	25	1.98
43828077--43828406	110	3.0	110	98	0	626	36	16	12	34	1.87
43829113--43829192	40	2.0	40	97	0	151	27	16	17	38	1.91
43831879--43831925	23	2.0	23	100	0	94	21	17	14	46	1.83
43838094--43838340	50	4.8	50	78	4	192	23	28	21	27	1.99
43844293--43844357	25	2.6	25	87	2	85	30	15	27	26	1.96
43844369--43844491	50	2.5	49	77	9	124	36	21	21	19	1.95
43844509--43844588	25	3.2	25	67	3	63	35	18	25	21	1.96
43844375--43844555	99	1.8	99	80	9	217	39	20	21	18	1.93
43845424--43845461	14	2.7	14	80	15	51	2	18	2	76	1.02
43845430--43845477	21	2.5	20	83	10	55	2	16	8	72	1.18
43845424--43845494	35	2.1	33	82	10	81	5	14	5	74	1.18
43847411--43847448	19	2.0	20	89	5	60	39	26	2	31	1.70
43852584--43852797	105	2.0	107	95	1	387	40	6	4	48	1.48
43856621--43856677	21	2.7	21	68	10	53	70	7	3	19	1.26
43856796--43856830	17	2.1	17	94	0	61	37	11	14	37	1.82
43862016--43862070	27	2.0	27	92	0	92	29	0	54	16	1.42
43863954--43863998	24	1.9	23	90	4	72	40	2	2	55	1.24
43864447--43864494	22	2.2	22	85	3	62	35	2	0	62	1.07
43865311--43865387	40	1.9	40	83	0	100	24	28	24	22	1.99
43866114--43866153	15	2.7	15	80	0	53	57	32	0	10	1.32
43886135--43886187	25	2.1	25	85	0	70	13	13	15	58	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43886846--43886897	21	2.4	21	87	9	70	73	3	1	21	1.10
43886992--43887030	20	2.0	19	85	14	53	20	2	0	76	0.90
43888765--43888789	7	3.6	7	100	0	50	28	0	12	60	1.32
43889908--43889955	25	1.9	25	91	0	78	43	0	14	41	1.45
43889994--43890798	23	36.1	22	76	12	606	46	27	0	25	1.54
43889994--43890796	46	18.0	44	82	10	713	46	27	0	25	1.54
43890136--43890259	39	3.1	39	84	11	128	50	23	0	25	1.49
43890026--43890711	199	3.4	198	86	7	881	46	28	0	25	1.55
43890756--43890807	23	2.2	23	89	3	77	50	19	0	30	1.48
43893982--43894358	124	3.0	125	89	1	562	32	22	15	29	1.94
43895944--43896042	49	2.0	49	82	0	117	24	16	27	32	1.96
43897411--43897509	49	2.0	49	82	0	117	24	16	27	32	1.96
43900351--43900449	49	2.0	49	82	0	117	24	16	27	32	1.96
43901821--43901919	49	2.0	49	82	0	117	24	16	27	32	1.96
43903289--43903387	49	2.0	49	82	0	117	24	16	27	32	1.96
43909164--43909262	49	2.0	49	82	0	117	24	16	27	32	1.96
43911261--43911294	17	2.0	17	88	0	50	47	0	2	50	1.16
43911408--43911452	5	9.2	5	95	4	83	40	0	0	60	0.97
43911470--43911545	35	2.2	34	83	2	89	46	14	5	34	1.67
43912894--43912948	21	2.8	20	78	8	67	43	23	23	9	1.82
43918853--43919030	27	6.6	27	83	3	205	26	15	28	29	1.96
43918854--43919009	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43918850--43919030	82	2.2	81	83	2	229	27	15	27	29	1.96
43937877--43937931	23	2.3	23	93	3	92	40	21	20	18	1.92
43939049--43939266	105	2.1	101	80	8	226	34	15	23	26	1.94
43939241--43939286	22	2.1	22	87	0	65	39	19	19	21	1.93
43939827--43939986	78	2.1	78	95	0	284	24	4	28	43	1.73
43941184--43941472	144	2.0	144	95	0	524	37	17	17	28	1.92
43944441--43944566	50	2.5	50	85	2	173	23	16	20	38	1.92
43944642--43945006	142	2.6	142	95	0	649	27	21	17	33	1.95
43946239--43946279	13	3.0	13	85	7	55	12	19	0	68	1.21
43947110--43947185	30	2.6	29	80	10	75	11	10	10	67	1.43
43947102--43947193	28	3.1	28	79	14	89	10	9	9	69	1.37
43951575--43951623	23	2.1	23	100	0	98	57	12	4	26	1.53
43961016--43961170	42	3.7	42	78	3	141	43	18	20	18	1.88
43961102--43961175	21	3.5	21	77	0	76	45	17	18	17	1.85
43971690--43971758	21	3.3	21	75	0	66	42	21	23	13	1.88
43971705--43971816	42	2.7	42	86	4	138	40	19	24	16	1.91
43974060--43974099	20	2.1	18	90	9	62	57	0	27	15	1.38
43976063--43976220	85	1.9	85	84	5	212	29	17	15	37	1.91
43977776--43978035	75	3.6	73	76	13	227	42	5	9	42	1.60
43977912--43978038	65	1.9	67	88	4	195	40	3	8	46	1.53
43978245--43978301	6	9.5	6	82	0	60	17	29	1	50	1.56
43983467--43983534	7	9.4	7	88	3	91	16	0	36	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43992661--43992696	16	2.2	16	90	0	54	55	13	5	25	1.60
43992780--43992840	11	6.1	10	72	12	54	22	1	3	72	1.09
43999605--43999643	18	2.2	18	85	0	51	20	30	33	15	1.94
44009854--44009891	19	2.0	19	85	10	51	52	7	21	18	1.70
44013991--44014045	27	2.0	27	92	0	92	29	12	12	45	1.79
44015828--44015870	15	2.9	15	85	0	59	41	9	16	32	1.80
44015829--44015878	15	3.4	14	81	8	55	44	10	18	28	1.81
44018042--44018255	23	9.3	23	81	2	214	23	21	25	30	1.99
44018042--44018248	46	4.5	46	84	0	279	23	21	25	30	1.99
44026568--44026605	19	2.0	19	94	0	67	23	15	0	60	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182