genome.fa.s21.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  139  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42615146--42615175	5	6.0	5	100	0	60	40	40	0	20	1.52
42621862--42621945	42	2.0	42	92	0	141	30	20	19	29	1.97
42625941--42625977	5	7.6	5	82	17	51	81	0	0	18	0.70
42627454--42627550	49	2.0	48	85	2	131	44	14	18	22	1.86
42628672--42628698	6	4.5	6	100	0	54	37	29	18	14	1.91
42629875--42629900	13	2.0	13	100	0	52	23	7	30	38	1.83
42631978--42632075	49	2.0	49	91	0	160	40	15	21	22	1.90
42641096--42641176	21	4.0	21	87	3	103	44	18	17	19	1.87
42644097--42644143	22	2.1	22	92	0	76	10	19	40	29	1.85
42645216--42645263	20	2.4	20	82	0	60	33	22	14	29	1.94
42646075--42646121	24	1.9	25	91	4	78	10	10	2	76	1.10
42649776--42649811	3	12.0	3	100	0	72	33	0	0	66	0.92
42650320--42650370	23	2.2	24	82	10	61	37	3	1	56	1.29
42654056--42654148	46	2.0	46	100	0	186	35	15	27	21	1.93
42660449--42660532	23	3.6	22	80	10	87	40	0	2	57	1.12
42660472--42660537	10	6.9	10	75	16	68	43	0	1	54	1.09
42660470--42660536	23	2.9	23	86	6	91	41	0	1	56	1.08
42678520--42678589	33	2.1	33	100	0	140	24	0	24	51	1.49
42680495--42680529	10	3.4	10	84	7	52	40	0	8	51	1.33
42680486--42680529	21	2.1	21	100	0	88	38	0	9	52	1.33
42680486--42680521	11	3.4	11	84	7	56	36	0	11	52	1.37
42705501--42705547	24	2.0	24	95	0	85	38	12	12	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42709533--42709594	30	2.1	29	93	3	106	24	0	22	53	1.46
42711758--42711909	52	2.9	52	76	8	164	25	18	25	30	1.98
42717060--42717155	48	2.0	48	97	0	183	28	20	32	18	1.97
42719658--42719687	15	2.0	15	93	0	51	70	0	13	16	1.18
42724540--42724676	60	2.3	60	85	8	172	25	25	20	28	1.99
42724539--42724640	28	3.5	27	71	19	80	24	28	20	26	1.99
42724669--42724714	20	2.3	20	82	14	60	28	28	17	26	1.98
42724681--42724723	19	2.2	20	83	4	52	34	25	18	20	1.96
42726835--42726863	15	1.9	15	100	0	58	58	0	0	41	0.98
42729844--42729896	28	1.9	28	88	3	81	28	24	16	30	1.97
42729821--42729992	60	2.8	61	80	10	167	27	23	19	29	1.98
42732294--42732339	19	2.5	19	86	6	60	43	8	0	47	1.34
42738108--42738134	10	2.7	10	100	0	54	18	7	0	74	1.05
42741365--42741393	12	2.4	12	100	0	58	44	0	6	48	1.29
42751349--42751387	4	9.5	4	88	5	51	0	30	0	69	0.89
42751355--42751396	13	3.3	13	83	3	50	0	28	0	71	0.86
42751350--42751396	12	3.7	13	78	13	53	0	29	0	70	0.88
42753465--42753578	43	2.7	42	83	4	147	29	15	24	29	1.96
42757037--42757089	27	2.0	27	96	0	97	32	22	7	37	1.82
42758046--42758082	20	1.9	20	88	5	58	51	8	0	40	1.32
42760601--42760625	12	2.1	12	100	0	50	68	0	0	32	0.90
42762118--42762149	2	16.0	2	100	0	64	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42775625--42775752	68	1.9	68	81	0	157	21	25	14	37	1.92
42781380--42781404	8	3.1	8	100	0	50	76	0	0	24	0.80
42781392--42781450	31	1.9	31	86	6	84	57	3	0	38	1.15
42784371--42784411	21	2.0	21	100	0	82	29	14	19	36	1.92
42789898--42789991	43	2.2	43	83	9	111	40	17	20	22	1.91
42792049--42792076	14	2.0	14	100	0	56	50	7	0	42	1.30
42796639--42796736	49	2.0	49	97	0	187	40	17	12	29	1.86
42802821--42802845	2	12.5	2	100	0	50	52	48	0	0	1.00
42804631--42804711	26	3.1	26	100	0	162	30	7	27	34	1.84
42816793--42816822	14	2.1	15	93	6	53	0	26	0	73	0.84
42816883--42816915	17	1.9	17	88	11	50	21	6	0	72	1.05
42817324--42817354	15	2.1	14	94	5	53	54	6	3	35	1.42
42817341--42817409	21	3.4	20	71	16	70	55	7	1	36	1.37
42817375--42817427	27	1.9	28	88	3	81	58	5	0	35	1.22
42821597--42821659	27	2.3	27	81	5	83	38	36	6	19	1.77
42824687--42824729	21	2.0	21	100	0	86	23	41	9	25	1.84
42838892--42838951	30	2.0	30	86	0	84	56	13	3	26	1.52
42841539--42841696	48	3.3	48	81	3	192	36	15	15	32	1.89
42842620--42842675	15	3.6	16	79	11	55	44	7	1	46	1.41
42844730--42844791	27	2.3	26	78	8	70	37	0	11	51	1.38
42850884--42850950	33	2.0	33	97	0	125	22	20	22	34	1.97
42851150--42851204	5	11.4	5	76	21	55	20	1	0	78	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42851148--42851211	20	3.2	19	81	18	76	21	1	0	76	0.87
42852746--42852775	15	2.0	15	93	0	51	50	0	10	40	1.36
42852800--42852831	10	3.3	10	95	4	57	31	6	0	62	1.20
42856980--42857047	34	2.0	34	100	0	136	41	23	20	14	1.89
42858350--42858413	2	32.0	2	100	0	128	0	50	0	50	1.00
42862560--42862591	2	16.5	2	93	6	57	46	0	0	53	1.00
42864165--42864330	3	56.7	3	68	10	67	60	1	9	28	1.36
42864274--42864326	27	2.0	27	92	0	88	60	0	9	30	1.28
42864240--42864357	12	9.5	12	71	14	78	61	2	10	25	1.40
42864528--42864589	3	21.0	3	83	9	83	62	3	1	32	1.20
42864688--42864751	16	3.9	16	71	17	51	57	6	1	34	1.33
42864756--42864789	9	3.8	9	88	0	50	55	0	2	41	1.15
42864625--42864850	74	3.1	71	71	18	194	59	5	4	30	1.40
42866538--42866635	45	2.2	44	80	8	101	27	21	15	35	1.93
42866888--42867007	64	1.9	64	91	0	195	32	25	17	25	1.97
42866952--42867257	77	4.0	77	85	3	427	32	20	17	29	1.96
42866882--42867238	154	2.4	141	77	12	401	32	21	17	28	1.96
42866942--42867264	154	2.1	154	88	0	495	34	20	16	28	1.94
42871137--42871220	28	3.0	28	91	1	132	19	3	30	46	1.66
42871141--42871234	28	3.6	24	78	18	91	15	4	34	45	1.66
42882864--42882936	35	2.1	34	92	2	119	26	19	15	39	1.90
42883597--42883642	23	2.0	23	84	12	60	45	10	6	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42883604--42883648	23	2.0	23	82	8	56	40	13	8	37	1.76
42887453--42887509	30	1.9	29	86	10	80	59	10	5	24	1.51
42887706--42887740	12	2.9	12	86	0	52	45	2	8	42	1.49
42887754--42887779	3	8.7	3	100	0	52	65	0	0	34	0.93
42887576--42888162	293	2.0	293	100	0	1174	56	4	8	29	1.50
42887999--42888033	12	2.9	12	86	0	52	45	2	8	42	1.49
42888047--42888208	3	55.0	3	67	9	66	59	1	9	29	1.38
42888406--42888452	3	16.0	3	78	12	53	61	4	2	31	1.27
42888406--42888446	23	1.9	21	85	14	57	60	4	2	31	1.30
42888488--42888760	143	1.9	146	87	3	401	58	6	4	30	1.42
42890802--42890829	10	2.8	10	100	0	56	71	7	10	10	1.31
42891476--42891527	25	2.1	25	85	0	68	38	15	9	36	1.80
42896810--42896856	21	2.2	21	78	17	53	48	4	4	42	1.42
42899412--42899466	21	2.6	21	88	0	83	36	14	29	20	1.92
42900198--42900727	264	2.0	264	100	0	1060	32	18	6	42	1.75
42902914--42902977	30	2.1	30	83	11	78	56	1	0	42	1.09
42909694--42909734	7	5.9	7	83	16	50	43	0	0	56	0.99
42910919--42910952	10	3.3	11	88	12	54	38	0	17	44	1.49
42936157--42936307	51	3.1	51	84	13	226	28	23	16	31	1.96
42936154--42936312	44	3.5	44	85	10	219	28	23	16	31	1.96
42938581--42938638	29	2.0	29	96	0	107	32	13	36	17	1.89
42955139--42955296	44	3.7	43	76	10	153	33	26	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42955134--42955303	86	2.0	85	81	5	200	35	25	15	22	1.94
42958291--42958399	43	2.5	43	100	0	218	27	12	27	32	1.93
42967141--42967169	5	5.8	5	100	0	58	82	0	0	17	0.66
42974739--42974798	20	2.8	22	76	23	65	51	0	1	46	1.10
42975505--42975548	21	2.2	20	84	12	54	63	13	13	9	1.51
42976389--42976472	42	2.0	42	95	0	150	27	32	15	25	1.95
42979319--42979380	28	2.1	29	88	5	90	48	0	32	19	1.49
42980494--42980679	26	7.4	26	75	7	150	59	3	5	30	1.39
42980494--42980681	50	3.7	52	76	9	165	59	4	5	30	1.40
42980534--42980681	48	2.9	51	78	7	167	60	4	4	30	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182