Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  167  of  182  ( 21791 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51098378--51098459
30
2.7
30
85
7
121
29
13
19
37
1.90
51099299--51099358
23
2.8
21
75
20
70
31
0
28
40
1.57
51100679--51100833
43
3.6
43
86
1
213
26
16
25
32
1.96
51102262--51102300
20
2.0
19
90
5
60
33
0
2
64
1.08
51102792--51102826
5
6.8
5
90
6
52
2
0
22
74
0.95
51107857--51107894
20
1.9
20
84
10
51
13
31
0
55
1.38
51108439--51108469
10
2.9
11
90
9
55
29
29
0
41
1.56
51110138--51110229
30
3.1
30
78
6
98
34
44
10
9
1.73
51110142--51110229
29
3.0
30
76
6
90
35
44
11
9
1.72
51122060--51122147
30
3.0
30
70
6
81
35
20
21
22
1.96
51123132--51123170
17
2.3
17
90
0
60
33
5
0
61
1.18
51123152--51123200
16
3.1
16
73
23
50
46
4
0
48
1.20
51127174--51127238
30
2.2
30
97
0
121
60
16
1
21
1.45
51127267--51127314
11
4.4
11
78
0
51
60
8
10
20
1.55
51127268--51127310
22
2.0
22
90
0
68
58
9
11
20
1.61
51127275--51127315
11
3.7
11
80
0
55
56
9
14
19
1.66
51127886--51127991
51
2.1
51
96
0
194
39
10
12
37
1.77
51127970--51128100
63
2.1
63
86
2
183
28
15
16
40
1.88
51135088--51136468
132
10.5
132
89
2
1859
28
23
18
29
1.98
51135169--51135349
44
4.1
44
65
13
111
28
22
18
29
1.98
51135654--51136399
44
17.0
44
65
6
137
28
22
18
29
1.97
51136246--51136438
44
4.4
44
67
14
112
27
24
18
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51136068--51136406
44
7.7
44
66
11
174
28
23
17
30
1.97
51137832--51137869
14
2.7
15
84
12
53
13
10
0
76
1.02
51137831--51137870
21
2.0
19
90
9
62
15
10
0
75
1.05
51138814--51138853
19
2.1
19
90
0
62
67
7
12
12
1.41
51140087--51140688
301
2.0
301
99
0
1186
24
25
19
30
1.98
51141024--51141070
19
2.5
19
82
6
60
44
8
19
27
1.79
51144027--51144317
148
2.0
146
81
8
338
31
8
6
53
1.56
51145042--51145101
30
2.0
30
83
0
75
56
11
20
11
1.65
51151332--51151389
21
2.9
21
89
5
84
13
24
18
43
1.87
51153187--51153238
24
2.1
26
85
7
72
40
3
1
53
1.30
51156387--51156414
10
2.8
10
100
0
56
28
21
17
32
1.96
51156732--51156794
31
2.0
31
96
0
117
20
11
15
52
1.73
51160043--51160094
19
2.7
18
85
8
59
51
0
1
46
1.12
51162619--51162644
7
3.7
7
100
0
52
57
0
0
42
0.98
51166775--51166825
21
2.4
22
80
6
61
29
7
17
45
1.77
51168158--51168200
3
14.3
3
95
0
77
30
0
2
67
1.03
51169991--51170034
19
2.3
20
84
7
56
27
20
11
40
1.86
51172098--51172167
7
9.9
7
80
9
54
81
5
0
12
0.86
51172088--51172170
9
8.8
9
78
16
71
81
4
0
13
0.83
51172097--51172160
14
4.3
15
74
18
62
81
6
0
12
0.87
51174527--51174576
25
2.0
25
84
0
64
36
20
18
26
1.95
51174402--51175040
125
5.1
125
99
0
1260
34
20
19
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51174652--51174701
25
2.0
25
84
0
64
36
20
18
26
1.95
51174777--51174826
25
2.0
25
84
0
64
36
20
18
26
1.95
51174902--51174951
25
2.0
25
84
0
64
36
20
18
26
1.95
51176607--51177010
110
3.7
110
94
1
688
30
17
20
32
1.95
51178914--51178984
22
3.6
20
76
14
76
56
0
2
40
1.14
51178930--51178965
11
3.4
11
92
3
56
55
0
5
38
1.23
51178949--51179000
17
3.4
17
70
29
62
59
0
0
40
0.97
51178947--51179001
28
2.0
28
100
0
110
58
0
0
41
0.98
51178930--51178994
11
6.5
10
72
19
55
55
0
3
41
1.15
51190291--51190338
20
2.5
19
86
3
60
37
6
2
54
1.38
51192550--51192592
22
2.0
22
85
0
59
20
11
9
58
1.61
51202957--51203276
113
2.8
113
83
5
360
30
20
24
24
1.99
51203077--51203475
200
2.0
200
85
3
545
32
19
23
25
1.97
51203202--51203361
85
1.9
86
85
8
229
33
18
21
26
1.97
51203276--51203533
115
2.3
114
84
4
333
31
18
23
26
1.97
51203590--51203675
7
12.0
7
69
14
50
18
0
32
48
1.48
51204441--51204475
14
2.4
15
90
4
54
20
0
37
42
1.52
51206326--51206352
12
2.2
12
100
0
54
37
7
14
40
1.74
51206807--51207227
210
2.0
211
97
1
801
34
11
9
44
1.74
51208588--51208639
21
2.5
20
87
9
77
32
15
46
5
1.70
51209072--51209179
42
2.6
42
84
8
139
32
22
20
25
1.98
51209143--51209413
123
2.2
123
98
0
526
25
24
22
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51212058--51212098
21
2.0
21
95
0
73
31
26
9
31
1.89
51218103--51218127
13
1.9
13
100
0
50
64
16
8
12
1.49
51229467--51229518
26
2.0
26
85
7
70
21
23
1
53
1.55
51232523--51232602
38
2.1
38
88
4
117
37
2
6
53
1.40
51234686--51234729
23
2.0
23
86
4
63
18
11
18
52
1.74
51246048--51246284
24
10.4
22
69
18
80
54
5
7
33
1.50
51246157--51246283
69
1.9
67
81
6
157
55
3
7
33
1.46
51246185--51246296
24
4.7
24
69
21
74
57
5
6
31
1.46
51255496--51255550
19
2.9
21
76
17
57
54
5
0
40
1.23
51258007--51258042
16
2.3
16
90
4
56
13
0
13
72
1.13
51258006--51258042
15
2.3
17
81
13
51
13
0
13
72
1.11
51268188--51268259
35
2.1
35
94
0
126
36
16
27
19
1.93
51269572--51269635
17
3.7
17
85
6
76
29
29
21
18
1.97
51282238--51282263
12
2.2
12
100
0
52
34
7
7
50
1.60
51282771--51282833
33
1.9
32
87
3
90
26
39
22
11
1.87
51282772--51282841
33
2.2
32
84
2
86
28
40
20
11
1.87
51296239--51296322
36
2.3
36
83
2
96
41
16
5
35
1.73
51296530--51296634
42
2.5
42
76
16
108
27
27
21
22
1.99
51304782--51304822
19
2.1
20
86
4
57
73
2
7
17
1.17
51305418--51305670
138
1.8
138
88
1
391
39
7
5
47
1.56
51321935--51321978
16
2.8
15
86
10
61
47
22
0
29
1.51
51321935--51321977
15
2.7
16
89
7
61
48
23
0
27
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51323643--51323671
15
1.9
15
100
0
58
48
10
13
27
1.75
51331723--51331765
17
2.5
17
85
11
61
25
20
18
34
1.96
51336830--51336887
29
2.0
29
86
6
82
36
22
10
31
1.88
51337326--51337373
17
2.9
16
78
9
51
31
2
18
47
1.60
51340099--51340125
2
13.5
2
100
0
54
48
0
0
51
1.00
51356389--51356429
19
2.2
19
95
0
73
39
4
12
43
1.63
51356467--51356548
41
2.0
41
90
0
128
31
7
10
50
1.65
51362055--51362415
178
2.0
174
87
7
510
51
14
16
16
1.76
51368477--51368509
17
1.9
17
93
0
57
36
3
6
54
1.41
51374308--51374343
16
2.2
17
90
9
58
16
22
0
61
1.35
51376289--51376329
12
3.3
13
80
10
50
63
0
2
34
1.08
51376804--51376901
46
2.2
46
98
1
189
33
6
20
39
1.77
51377440--51377963
97
5.4
97
87
4
743
40
1
19
37
1.62
51377995--51378413
126
3.3
125
91
2
671
35
17
20
26
1.95
51381663--51381708
21
2.2
21
81
14
51
6
19
36
36
1.78
51384981--51385362
104
3.7
103
81
4
416
34
17
18
29
1.94
51386968--51387054
34
2.6
34
81
3
95
42
14
10
32
1.80
51387960--51387993
11
3.1
11
86
0
50
73
0
17
8
1.08
51390138--51390250
46
2.5
46
92
4
187
33
15
23
27
1.95
51392717--51392763
24
2.0
24
87
8
69
6
8
10
74
1.22
51395129--51395216
33
2.7
33
77
11
92
44
19
10
26
1.82
51395195--51395262
35
1.9
35
88
5
102
45
14
8
30
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51395477--51395524
16
3.0
16
93
0
78
60
8
0
31
1.26
51395496--51395534
16
2.4
16
86
0
51
61
10
2
25
1.41
51395473--51395536
32
2.0
33
84
9
87
59
9
1
29
1.38
51397224--51397279
29
1.9
29
88
0
85
37
7
17
37
1.78
51400296--51400361
24
2.8
22
76
15
60
37
18
3
40
1.66
51423946--51423986
7
6.1
7
86
11
50
63
0
0
36
0.95
51432322--51432362
21
2.0
21
85
0
55
43
19
9
26
1.82
51433793--51433860
25
2.7
25
79
0
73
25
23
19
32
1.97
51439568--51439697
40
3.3
40
80
8
153
32
20
25
21
1.98
51441509--51441537
13
2.1
14
93
6
51
62
0
0
37
0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182