genome.fa.s21.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  116  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35516457--35516485	4	7.2	4	100	0	58	0	24	0	75	0.80
35518969--35519012	22	2.0	22	100	0	88	45	27	0	27	1.54
35524521--35524550	14	2.1	14	100	0	60	6	6	6	80	1.04
35535272--35535536	40	6.7	40	85	5	295	25	27	21	25	1.99
35535468--35535545	40	1.9	41	82	10	97	26	28	20	24	1.99
35543224--35543488	40	6.7	40	85	5	286	26	27	21	24	1.99
35543191--35543488	80	3.7	80	79	9	263	25	27	21	25	1.99
35543420--35543497	40	1.9	41	82	10	97	26	28	20	24	1.99
35548236--35548293	28	2.1	28	90	0	89	17	15	22	44	1.86
35571469--35571639	57	2.9	59	74	9	197	40	8	20	30	1.83
35571439--35571620	57	3.1	61	74	10	223	38	8	21	30	1.84
35572744--35572913	85	2.0	85	92	0	286	35	14	15	34	1.88
35572914--35572982	34	2.0	34	97	0	129	28	15	7	47	1.72
35576506--35576537	16	2.0	16	93	0	55	25	15	0	59	1.36
35576761--35576951	51	3.8	50	82	6	242	31	27	16	23	1.96
35579122--35579174	27	2.0	27	84	0	70	20	32	26	20	1.98
35581668--35582098	107	4.0	107	99	0	835	51	11	9	27	1.69
35582400--35582642	50	4.7	50	80	3	216	23	27	22	26	1.99
35589361--35589399	12	3.2	12	85	0	51	20	23	5	51	1.67
35589656--35589792	50	2.7	50	85	4	161	23	30	18	27	1.97
35602488--35603412	44	21.1	44	69	9	374	32	17	21	28	1.96
35602502--35602930	175	2.4	174	89	0	642	33	17	20	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35602548--35602829	85	3.3	85	69	11	257	32	15	20	30	1.94
35602676--35603513	219	3.8	218	95	0	1451	32	18	21	28	1.96
35603509--35603695	99	1.9	100	84	1	250	33	23	17	25	1.96
35605769--35605846	18	4.2	18	66	23	54	26	10	0	62	1.27
35605748--35605887	56	2.4	57	88	7	203	27	8	2	62	1.36
35606370--35606482	57	2.0	57	98	0	217	29	16	17	36	1.92
35608011--35608059	22	2.2	22	85	0	62	79	2	14	4	0.97
35608011--35608068	17	3.6	16	76	6	55	79	1	15	3	0.95
35627630--35627852	40	5.6	39	85	3	241	26	27	20	24	1.99
35627630--35627852	120	1.9	119	81	6	272	26	27	20	24	1.99
35635537--35635721	40	4.7	40	81	5	178	27	28	20	24	1.99
35635504--35635721	40	5.5	39	77	7	165	25	27	20	25	1.99
35641529--35641610	28	2.9	29	78	5	78	23	15	24	36	1.94
35641676--35641770	44	2.2	44	86	0	127	22	18	25	33	1.97
35649228--35649416	50	3.6	51	78	7	159	28	20	25	25	1.99
35649672--35649710	20	2.0	20	90	10	62	56	5	23	15	1.59
35651104--35651149	20	2.3	20	78	14	51	45	19	6	28	1.75
35656729--35656777	3	16.3	3	82	0	62	28	2	6	63	1.30
35657097--35657156	29	2.1	29	100	0	120	23	15	20	41	1.89
35667837--35667917	25	3.3	25	74	8	67	46	4	18	29	1.70
35674791--35674826	17	2.1	17	100	0	72	5	22	16	55	1.62
35675602--35675637	17	2.1	17	89	0	54	61	8	11	19	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35676089--35676130	21	2.0	21	86	9	59	30	38	4	26	1.77
35689419--35689468	26	1.9	26	83	0	64	26	36	20	18	1.95
35698836--35699058	79	2.8	79	82	9	260	25	27	21	25	1.99
35698836--35699058	39	5.7	40	84	8	248	25	27	21	25	1.99
35702503--35702615	56	2.0	56	88	6	167	53	9	18	17	1.70
35711104--35711141	19	2.0	19	90	10	60	39	0	39	21	1.53
35713291--35713344	22	2.5	22	79	8	65	59	14	1	24	1.46
35720801--35720920	56	2.1	56	98	0	231	45	9	23	22	1.81
35722377--35722466	49	2.0	41	95	4	108	35	8	25	30	1.86
35722378--35722750	47	7.6	49	86	8	460	33	8	29	28	1.86
35722420--35722588	49	3.0	59	85	12	225	31	7	30	30	1.84
35722601--35722722	22	5.3	22	63	21	61	33	10	29	26	1.90
35745643--35745710	30	2.2	31	84	2	84	25	19	8	47	1.78
35751670--35751769	42	2.4	42	86	0	128	38	12	28	22	1.89
35758355--35758431	29	2.6	30	79	6	86	45	22	7	24	1.78
35758489--35758543	26	2.1	27	83	6	69	63	3	1	30	1.22
35758530--35758612	34	2.5	33	82	5	103	57	1	3	37	1.24
35758857--35758931	20	4.0	18	70	13	53	25	6	2	65	1.30
35758995--35759041	14	3.3	14	76	5	58	55	6	4	34	1.45
35759000--35759054	15	3.7	15	78	4	67	49	7	1	41	1.41
35758988--35759051	29	2.2	29	100	0	128	43	7	3	45	1.48
35759060--35759124	29	2.2	30	83	2	78	29	10	20	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35771821--35771870	25	2.0	26	92	4	84	22	0	26	52	1.48
35773717--35773807	17	5.4	17	66	27	50	39	4	3	52	1.38
35776098--35776147	25	2.0	25	84	7	66	46	6	8	40	1.58
35777170--35777224	22	2.4	24	84	6	69	36	10	20	32	1.87
35782908--35782950	22	2.0	22	90	0	68	9	18	27	44	1.80
35783022--35783267	43	5.7	43	89	0	323	26	29	17	26	1.98
35783022--35783267	128	1.9	129	85	2	343	26	29	17	26	1.98
35787827--35787867	21	2.0	21	95	0	73	29	43	0	26	1.55
35788065--35788118	22	2.3	24	84	9	76	62	0	0	37	0.95
35788148--35788210	22	2.9	22	85	4	83	38	42	0	19	1.51
35788223--35788263	14	2.9	15	82	10	59	39	31	0	29	1.57
35788226--35788272	15	3.3	15	82	8	53	42	29	0	27	1.56
35788497--35788612	41	2.8	41	90	2	180	27	31	20	19	1.97
35788648--35788726	39	2.0	39	90	2	122	24	20	16	39	1.92
35788648--35788785	40	3.5	40	75	5	136	22	20	18	39	1.93
35789491--35789517	9	3.0	9	100	0	54	66	0	0	33	0.92
35789831--35789964	59	2.2	58	82	5	160	41	2	4	52	1.34
35792792--35793051	46	5.6	46	85	8	348	28	23	15	32	1.95
35792790--35793051	98	2.8	97	85	10	371	29	22	15	32	1.95
35795771--35796226	228	2.0	228	98	0	876	34	24	5	34	1.80
35802365--35802578	42	5.1	42	76	10	231	35	24	17	21	1.95
35802363--35802576	84	2.5	84	94	1	367	36	25	16	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35802586--35802772	51	3.7	49	78	5	203	30	28	17	24	1.97
35802584--35802768	101	1.8	101	87	3	273	30	28	17	23	1.97
35802578--35802798	101	2.2	101	79	5	250	29	28	16	25	1.97
35812584--35812617	16	2.2	16	94	5	61	52	14	5	26	1.64
35818601--35818632	12	2.7	12	100	0	64	37	6	18	37	1.76
35820413--35820459	23	2.0	23	95	0	85	31	19	21	27	1.97
35824646--35824687	17	2.5	17	84	0	57	33	4	16	45	1.69
35824815--35825024	42	5.0	42	83	4	253	27	20	24	27	1.99
35830474--35830504	13	2.4	13	94	0	53	38	9	0	51	1.35
35835821--35836102	43	6.8	43	76	11	268	29	29	18	22	1.97
35836045--35836129	42	2.0	41	88	6	127	30	25	18	24	1.98
35840798--35840827	13	2.3	13	100	0	60	13	6	30	50	1.67
35843136--35843200	21	3.0	21	74	17	71	24	3	47	24	1.66
35844328--35844631	96	2.9	105	78	12	349	42	28	1	27	1.65
35844571--35844672	7	14.7	7	69	19	54	39	39	0	21	1.54
35844677--35844709	14	2.3	15	94	5	59	36	33	0	30	1.58
35844915--35844962	26	1.9	24	87	8	69	45	31	0	22	1.53
35844776--35844962	96	1.9	96	86	2	268	44	27	1	26	1.64
35844955--35845014	21	2.8	20	80	14	59	33	45	0	21	1.52
35844965--35845015	7	7.3	7	79	0	57	29	49	0	21	1.50
35844975--35845007	14	2.4	14	100	0	66	30	48	0	21	1.50
35845011--35845037	14	1.9	14	100	0	54	44	33	0	22	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35845039--35845071	15	2.3	15	89	5	50	36	30	3	30	1.73
35845120--35845163	20	2.1	21	91	4	72	47	25	0	27	1.52
35845478--35845715	41	5.9	41	84	1	273	28	29	21	20	1.98
35850974--35851014	20	2.0	20	85	4	55	29	0	4	65	1.13
35854905--35854949	23	1.9	24	90	4	74	17	2	51	28	1.58
35855465--35855502	18	2.1	18	85	9	51	44	5	15	34	1.69
35857306--35857384	26	3.1	25	80	7	104	50	1	3	44	1.28
35857528--35857560	16	2.1	16	94	0	57	39	6	33	21	1.78
35857540--35857636	44	2.2	44	87	5	133	31	5	28	34	1.79
35862254--35862297	7	6.3	7	94	0	79	31	0	27	40	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182