genome.fa.s21.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  165  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50598240--50598339	26	4.0	25	67	16	82	35	0	12	53	1.38
50598888--50598932	18	2.5	18	81	0	63	28	8	48	13	1.72
50599231--50599255	12	2.1	12	100	0	50	68	8	16	8	1.38
50599851--50599875	12	2.1	12	100	0	50	8	16	8	68	1.38
50600177--50600387	39	5.3	40	74	16	156	0	32	0	67	0.91
50600185--50600369	34	5.2	35	76	18	136	0	33	0	66	0.92
50600241--50600390	4	37.0	4	74	17	98	0	32	0	67	0.91
50600218--50600385	40	4.1	43	80	15	178	0	32	0	67	0.91
50600205--50600389	82	2.2	84	84	10	245	0	32	0	67	0.91
50600234--50600389	43	3.7	46	74	19	142	0	32	0	67	0.91
50612754--50612825	26	2.7	26	93	2	117	47	0	8	44	1.33
50616454--50616509	21	2.7	21	97	0	103	26	8	35	28	1.87
50622158--50622277	44	2.7	44	80	6	136	30	25	18	26	1.98
50622246--50622412	44	3.8	42	72	7	127	20	22	24	32	1.98
50622246--50622412	88	1.9	88	85	2	228	20	22	24	32	1.98
50622527--50622987	88	5.3	88	89	1	712	24	23	22	29	1.99
50622575--50622800	43	5.2	43	61	21	101	24	22	23	29	1.99
50622527--50622987	175	2.6	176	90	2	687	24	23	22	29	1.99
50624615--50624674	28	2.1	28	87	6	86	11	8	8	71	1.30
50629617--50629682	26	2.5	25	72	18	71	56	4	3	36	1.35
50631256--50631372	30	3.9	31	93	4	195	37	10	0	51	1.42
50631256--50631372	29	3.9	29	93	4	189	37	10	0	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50631809--50631889	24	3.2	23	80	19	99	45	8	0	45	1.34
50631833--50631876	13	3.2	13	77	22	54	52	4	0	43	1.22
50631809--50631892	28	3.2	26	79	12	91	44	8	0	47	1.33
50632275--50632319	17	2.8	16	90	6	65	33	46	0	20	1.51
50633104--50633224	60	2.0	62	91	8	203	18	48	5	27	1.70
50633475--50633517	23	1.9	22	95	4	77	13	6	20	58	1.59
50636577--50636661	21	4.0	22	86	6	111	51	17	30	0	1.46
50638414--50638445	16	2.0	16	93	0	55	28	3	12	56	1.51
50646090--50646211	28	4.4	28	73	4	102	30	24	22	22	1.99
50646317--50646393	26	3.0	26	84	0	91	38	24	20	15	1.92
50646566--50646764	27	7.4	27	82	1	220	18	20	18	42	1.90
50646566--50646764	54	3.7	54	85	3	249	18	20	18	42	1.90
50646568--50646764	81	2.4	80	85	5	254	18	20	18	42	1.89
50649933--50649981	25	1.9	26	87	4	73	42	8	10	38	1.68
50650195--50650248	20	2.7	20	82	5	74	50	3	1	44	1.30
50651796--50651826	16	1.9	16	93	0	53	70	9	9	9	1.33
50656493--50656533	21	2.0	21	90	0	64	29	21	29	19	1.98
50676847--50677046	89	2.3	90	84	6	250	42	19	8	30	1.81
50676841--50677031	90	2.1	90	82	7	244	42	18	7	31	1.79
50677084--50677119	19	1.9	19	88	5	56	58	0	2	38	1.13
50677355--50677443	24	3.5	24	69	20	65	31	1	2	65	1.12
50677378--50677463	10	8.4	10	69	18	52	27	2	1	68	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50677431--50677473	19	2.3	19	92	8	70	20	4	0	74	1.00
50677376--50677476	29	3.4	29	73	5	87	30	2	0	65	1.14
50679439--50679495	29	1.9	30	83	16	75	40	3	7	49	1.47
50680321--50680354	16	2.1	17	94	5	61	41	5	0	52	1.25
50682546--50682588	3	14.0	3	86	13	61	67	0	2	30	1.03
50682735--50682770	18	2.1	18	89	5	56	80	2	0	16	0.83
50684208--50684406	95	2.1	95	87	3	285	29	21	17	32	1.95
50684326--50684450	44	2.8	44	84	2	153	28	22	16	32	1.96
50684523--50685684	45	25.9	45	75	8	796	30	19	16	34	1.93
50684305--50684613	156	2.0	157	90	0	485	29	18	15	36	1.92
50684619--50685686	89	12.0	88	75	8	757	30	19	16	33	1.93
50684619--50685684	134	8.0	133	76	7	563	30	19	16	33	1.93
50684836--50685683	179	4.7	179	77	5	714	31	19	15	33	1.93
50696107--50696186	3	26.0	3	74	14	56	65	3	5	26	1.30
50696205--50696253	12	3.7	14	76	20	52	71	2	4	22	1.13
50696330--50696364	17	2.1	16	89	5	52	77	2	0	20	0.90
50700485--50700515	14	2.1	15	94	5	55	29	12	9	48	1.73
50704324--50704351	7	4.0	7	100	0	56	28	0	28	42	1.56
50707623--50707682	11	5.4	11	87	2	84	18	33	5	43	1.72
50707623--50707690	33	2.0	35	88	5	104	20	30	4	44	1.71
50708848--50708873	7	3.7	7	100	0	52	26	0	15	57	1.38
50709522--50709561	18	2.2	18	86	0	53	17	30	7	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50710018--50710046	8	3.8	8	95	4	51	51	0	0	48	1.00
50710098--50710202	21	5.0	21	76	4	122	44	26	1	26	1.64
50710098--50710202	43	2.5	41	87	7	158	44	26	1	26	1.64
50713356--50714051	126	5.5	126	90	1	1008	28	24	17	29	1.97
50713356--50714051	253	2.8	252	88	2	1024	28	24	17	29	1.97
50714176--50714216	8	5.2	8	80	16	50	53	24	0	21	1.46
50715812--50715846	18	2.0	17	94	5	61	42	0	5	51	1.25
50715864--50715968	31	3.3	32	74	9	92	34	7	6	51	1.57
50715891--50715976	32	2.8	30	75	10	84	37	8	3	51	1.49
50717646--50717688	16	2.6	16	81	3	50	2	13	11	72	1.22
50730288--50730364	40	1.9	41	86	7	113	44	1	7	46	1.40
50730371--50730431	28	2.2	29	82	5	72	72	4	18	4	1.21
50738403--50738481	21	3.6	21	81	13	88	41	0	0	58	0.98
50738403--50738481	22	3.6	22	78	14	74	41	0	0	58	0.98
50738423--50738582	72	2.1	77	88	6	240	51	1	1	45	1.20
50738587--50738648	31	1.9	33	87	6	92	48	1	0	50	1.10
50738626--50738676	24	2.3	21	86	10	66	62	0	0	37	0.95
50738705--50738766	20	3.1	20	74	6	54	74	3	4	17	1.13
50738735--50738781	24	1.9	25	95	4	87	74	4	4	17	1.14
50738742--50738782	12	3.3	13	75	25	52	73	4	4	17	1.19
50740393--50740417	2	12.5	2	100	0	50	48	0	0	52	1.00
50740686--50740723	19	2.0	19	85	10	51	50	5	0	44	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50749848--50749906	3	20.3	3	81	13	70	33	5	0	61	1.18
50749849--50749903	28	1.9	28	89	10	85	34	5	0	60	1.20
50753051--50753093	20	2.2	20	86	0	59	65	2	4	27	1.25
50753360--50753396	18	2.1	18	100	0	74	45	16	16	21	1.84
50755198--50755245	18	2.7	18	86	0	60	64	2	6	27	1.28
50760134--50760187	18	3.0	18	78	5	65	29	9	35	25	1.87
50761186--50761376	61	3.2	61	71	14	196	44	1	4	49	1.31
50761136--50761449	120	2.6	120	95	0	574	43	0	4	51	1.28
50761412--50761482	23	3.1	22	80	11	65	39	0	5	54	1.24
50761653--50761750	45	2.2	45	85	8	130	34	27	5	32	1.79
50768076--50768742	126	5.4	125	79	7	682	40	15	15	28	1.88
50768077--50768742	250	2.7	248	80	6	728	40	15	15	28	1.88
50768625--50768662	14	2.7	14	83	0	58	55	0	13	31	1.38
50768813--50768884	25	2.9	25	87	4	101	50	2	26	20	1.62
50768922--50768946	13	1.9	13	100	0	50	24	8	4	64	1.38
50774844--50774888	23	1.9	24	86	4	65	22	6	44	26	1.77
50775415--50775476	18	3.3	18	77	4	61	41	6	17	33	1.75
50776465--50776503	17	2.2	17	86	4	51	15	25	12	46	1.81
50779378--50779431	12	4.8	12	73	13	51	33	24	1	40	1.66
50779348--50779395	22	2.2	22	82	14	55	27	20	0	52	1.47
50779407--50779447	21	2.0	21	85	0	55	29	24	2	43	1.67
50781123--50781205	25	3.3	25	81	11	98	32	22	24	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50785674--50785732	27	2.1	28	84	9	77	27	5	18	49	1.68
50787110--50787149	14	2.9	14	84	0	53	42	17	7	32	1.77
50793522--50793576	25	2.2	25	96	3	103	49	0	3	47	1.19
50799721--50799773	22	2.5	20	80	11	70	22	32	0	45	1.53
50799734--50799846	22	5.3	22	75	12	119	29	27	0	43	1.55
50799739--50799886	62	2.4	62	100	0	296	31	25	0	43	1.55
50799892--50799955	30	2.1	31	91	2	103	34	0	1	64	1.03
50800063--50800105	22	2.0	22	81	9	52	27	0	6	65	1.18
50801035--50801059	7	3.6	7	100	0	50	28	0	12	60	1.32
50802492--50802829	124	2.7	126	93	1	547	33	20	14	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182