genome.fa.s21.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  105  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31680005--31680048	20	2.2	20	100	0	88	36	9	18	36	1.82
31693462--31693519	20	2.8	21	75	14	57	50	0	1	48	1.11
31695339--31695378	12	3.5	12	80	19	50	45	7	0	47	1.31
31702677--31702749	30	2.4	30	90	2	110	23	27	31	17	1.97
31702862--31702924	33	1.9	33	96	0	117	19	30	33	17	1.95
31705347--31705432	43	2.0	43	93	0	145	52	1	24	22	1.54
31705352--31705416	15	4.4	16	69	25	61	53	0	26	20	1.45
31706924--31706958	15	2.4	15	90	4	54	48	0	8	42	1.33
31708454--31708500	24	2.0	24	95	0	85	25	8	23	42	1.82
31709284--31709712	213	2.0	213	99	0	849	37	21	18	22	1.95
31711104--31711186	7	13.5	6	75	20	50	20	3	0	75	0.94
31711104--31711186	12	6.8	12	73	23	50	20	3	0	75	0.94
31711113--31711186	4	18.5	4	74	18	57	20	4	0	75	0.96
31711136--31711176	17	2.4	17	83	0	55	17	7	0	75	1.02
31712223--31712262	16	2.6	16	88	4	55	80	5	2	12	0.98
31715710--31715807	27	3.5	28	90	2	135	26	13	28	31	1.94
31715738--31715820	27	3.0	27	87	5	96	30	12	25	32	1.92
31715710--31715821	28	4.0	27	83	6	98	28	12	25	33	1.92
31717842--31717909	6	11.5	6	77	14	70	77	4	1	16	0.99
31717850--31717910	17	3.6	16	85	10	77	75	4	1	18	1.06
31721205--31721265	20	3.2	20	81	9	72	81	1	0	16	0.76
31721225--31721270	6	7.7	6	100	0	92	84	0	0	15	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31723299--31723326	14	2.0	14	100	0	56	42	14	14	28	1.84
31725954--31726026	35	2.0	36	92	5	121	35	8	4	52	1.51
31728547--31728583	19	1.9	19	100	0	74	32	21	8	37	1.83
31734755--31734843	26	3.5	24	78	10	70	60	2	2	34	1.21
31736329--31737124	143	5.6	143	87	2	1003	27	22	19	30	1.98
31736668--31737027	44	7.7	44	67	13	166	27	23	21	28	1.99
31737236--31737348	44	2.5	44	84	9	133	30	23	17	29	1.97
31737095--31737394	44	6.7	44	67	14	130	30	20	17	32	1.95
31738690--31738736	14	3.4	14	82	11	53	2	6	12	78	1.02
31738697--31738743	19	2.5	19	86	13	62	2	8	10	78	1.04
31739303--31739373	36	1.9	38	88	5	110	53	1	15	29	1.51
31747905--31747977	28	2.6	27	79	10	76	56	6	1	35	1.35
31748678--31748739	31	2.0	31	83	0	79	40	12	11	35	1.80
31758046--31758082	19	1.9	19	100	0	74	51	10	5	32	1.60
31758079--31758184	41	2.6	41	87	0	149	32	19	19	28	1.97
31766031--31766191	41	3.9	41	89	0	250	31	22	19	26	1.98
31767627--31768269	321	2.0	321	97	0	1205	34	16	10	38	1.83
31772014--31772050	16	2.3	16	95	0	65	43	5	29	21	1.75
31772283--31772408	18	6.9	18	70	20	75	56	2	0	40	1.18
31776855--31776906	12	4.4	12	80	4	61	1	1	30	65	1.14
31776941--31776986	23	2.0	23	91	0	74	17	4	15	63	1.47
31778480--31778600	59	2.1	59	96	3	226	26	14	29	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31794414--31794713	138	2.2	137	84	3	388	37	22	11	29	1.89
31794606--31794818	110	1.9	112	86	5	308	37	21	11	29	1.89
31801267--31801300	17	2.0	17	88	0	50	20	11	35	32	1.89
31802916--31802971	26	2.2	26	90	0	85	33	17	12	35	1.88
31805717--31805989	126	2.2	126	89	0	420	27	21	18	31	1.97
31816879--31816983	20	5.2	20	68	8	61	14	36	19	30	1.91
31820215--31820239	13	1.9	13	100	0	50	56	0	16	28	1.41
31823035--31823104	32	2.2	32	97	0	131	15	4	45	34	1.66
31823047--31823103	17	3.5	17	70	18	57	17	3	47	31	1.65
31844837--31844902	9	7.6	9	75	17	59	53	7	1	37	1.39
31849381--31849409	8	3.8	8	95	4	51	0	10	0	89	0.48
31850453--31850498	6	7.7	6	82	7	58	80	13	4	2	0.95
31850420--31850534	10	10.9	11	76	13	82	80	6	1	11	0.98
31850417--31850534	21	5.7	20	77	14	98	79	6	1	11	0.99
31850445--31850503	11	5.4	11	82	11	59	81	11	3	3	0.94
31850478--31850533	15	3.7	14	86	9	67	82	3	0	14	0.81
31850420--31850542	6	20.8	6	76	15	55	78	6	1	13	1.01
31850628--31850713	30	2.9	30	92	3	138	13	31	34	19	1.91
31851065--31851113	14	3.1	16	75	25	50	14	4	4	77	1.06
31855127--31855187	31	2.0	31	96	0	113	36	14	4	44	1.67
31855630--31855758	39	3.3	39	75	13	95	61	3	2	33	1.24
31855649--31855743	20	4.8	19	68	10	57	55	2	3	38	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31856075--31856237	89	1.9	88	85	3	231	31	9	20	38	1.84
31856075--31856280	89	2.3	85	80	8	216	36	7	17	37	1.79
31866845--31866872	14	2.0	14	100	0	56	28	35	7	28	1.84
31873454--31873524	23	3.1	23	84	8	99	35	23	19	21	1.96
31878969--31879015	25	2.0	23	91	8	76	31	21	0	46	1.51
31886468--31886505	6	6.3	6	96	0	67	55	28	0	15	1.41
31891266--31891474	94	2.2	94	83	1	258	36	10	19	33	1.86
31893012--31893191	55	3.3	55	94	1	299	30	28	12	27	1.93
31893012--31893191	28	6.6	27	91	3	279	30	28	12	27	1.93
31893012--31893191	83	2.2	82	92	1	297	30	28	12	27	1.93
31906259--31906297	3	13.0	3	100	0	78	66	0	0	33	0.92
31908554--31908655	41	2.5	41	95	0	177	21	24	14	39	1.91
31908695--31908740	14	3.3	13	80	14	56	78	13	0	8	0.97
31908695--31908741	15	3.3	15	75	19	55	78	12	0	8	0.95
31909894--31910008	61	1.9	61	87	3	169	16	20	15	47	1.82
31922605--31922979	94	4.1	94	77	10	385	32	20	20	27	1.97
31922752--31923064	44	7.0	44	76	8	281	31	20	21	26	1.97
31922658--31923064	182	2.2	182	84	3	523	32	20	20	26	1.97
31922802--31923065	138	1.9	138	82	7	331	31	20	21	26	1.98
31924677--31924738	3	20.7	3	100	0	124	0	0	32	67	0.91
31940967--31940996	6	5.0	6	91	0	51	30	33	16	20	1.94
31945674--31945703	6	5.0	6	91	0	51	30	33	16	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31947081--31947132	2	26.0	2	96	0	95	0	48	1	50	1.12
31953542--31953574	10	3.3	10	95	0	57	18	6	21	54	1.64
31953775--31953809	13	2.7	13	95	0	61	22	31	25	20	1.98
31958956--31958995	20	2.0	20	90	0	62	15	15	32	37	1.88
31969877--31969927	22	2.3	22	96	0	93	27	31	0	41	1.56
31969921--31970007	29	3.2	29	62	26	73	28	27	1	42	1.63
31969899--31970014	51	2.3	51	98	0	223	26	28	0	43	1.61
31970326--31971092	383	2.0	383	100	0	1534	26	21	28	22	1.99
31971536--31971568	7	4.7	7	100	0	66	27	0	15	57	1.38
31972227--31972262	18	2.0	18	94	0	63	22	30	5	41	1.76
31972632--31972716	43	2.0	43	88	4	127	41	0	11	47	1.40
31972724--31973290	29	19.6	29	90	2	809	46	29	0	23	1.54
31979699--31979747	25	2.1	24	81	11	57	44	4	4	46	1.41
31980116--31980147	17	1.9	16	93	6	55	46	0	18	34	1.49
31982425--31982528	51	2.0	51	100	0	208	40	15	13	30	1.86
31982750--31982926	46	3.8	46	89	0	273	29	25	8	36	1.85
31989209--31989682	21	22.3	22	80	9	470	44	29	0	25	1.54
31989213--31989676	43	11.0	42	80	9	464	44	29	0	26	1.54
31989209--31989675	127	3.7	125	82	6	562	44	29	0	26	1.54
31989688--31990060	127	3.0	127	91	1	590	27	23	17	31	1.97
31991150--31991185	18	2.1	16	90	10	54	63	2	0	33	1.08
31992401--31992430	9	3.3	9	90	0	51	60	26	0	13	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32003905--32004320	125	3.3	123	85	3	557	29	17	22	31	1.96
32005889--32005969	40	2.0	40	90	0	126	35	27	18	18	1.94
32007495--32007526	9	3.7	9	95	4	57	56	9	0	34	1.32
32025703--32025865	42	3.9	42	81	1	184	27	15	23	33	1.95
32027954--32028031	27	3.0	24	74	9	66	32	16	12	38	1.87
32032568--32032627	12	4.9	12	72	9	50	33	21	3	41	1.70
32032834--32033060	51	4.5	50	83	3	251	28	27	15	28	1.96
32034471--32034500	12	2.5	12	100	0	60	50	6	26	16	1.70
32037804--32037847	9	4.9	9	82	0	52	45	2	34	18	1.62
32037814--32037848	18	1.9	18	94	0	61	42	2	40	14	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182