genome.fa.s21.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  18  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6423011--6423234	47	4.8	47	76	11	167	29	20	28	22	1.98
6423011--6423235	46	4.8	47	76	13	162	28	20	28	22	1.98
6435003--6435038	17	2.1	17	89	0	54	11	16	25	47	1.79
6438235--6438304	25	2.8	25	97	0	131	25	24	25	24	2.00
6438338--6438412	10	7.1	11	77	7	66	33	17	13	36	1.88
6438352--6438400	21	2.3	21	96	0	89	36	18	10	34	1.85
6438525--6439124	27	22.2	27	92	2	936	28	19	16	36	1.93
6439144--6439274	53	2.4	54	88	1	183	40	8	21	29	1.82
6439144--6439274	27	4.9	27	90	1	183	40	8	21	29	1.82
6442119--6442234	57	2.0	56	81	6	135	27	28	17	26	1.97
6442118--6442224	29	3.8	27	80	8	106	28	28	17	26	1.98
6447357--6447465	39	2.8	39	92	0	182	22	24	28	23	2.00
6447720--6447782	31	2.0	31	96	0	117	25	6	20	47	1.73
6450085--6450136	27	1.9	27	84	7	70	13	13	26	46	1.80
6455668--6455710	22	2.0	22	100	0	86	23	16	27	32	1.96
6468116--6468427	148	2.1	148	95	0	561	27	26	22	24	2.00
6469065--6469113	23	2.1	23	96	0	89	34	24	10	30	1.89
6472420--6472465	16	2.9	16	90	6	58	52	28	4	15	1.61
6474529--6474758	114	2.0	114	100	0	460	33	7	22	36	1.83
6477223--6477257	8	4.4	8	85	0	52	54	22	20	2	1.58
6477481--6477582	29	3.6	29	86	1	134	25	15	30	28	1.96
6477481--6477591	58	1.9	57	87	1	159	26	15	30	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6481886--6481995	29	3.9	28	83	7	123	26	16	30	27	1.97
6501861--6501982	43	2.9	42	79	7	156	30	14	24	30	1.95
6505275--6505425	43	3.5	43	80	8	166	30	14	21	33	1.93
6506454--6506492	19	2.1	19	85	0	51	71	7	5	15	1.26
6506932--6507046	55	2.1	56	83	8	146	34	21	24	19	1.96
6506957--6507046	27	3.2	27	85	7	119	32	23	24	20	1.98
6507152--6507216	28	2.3	28	94	0	112	30	7	27	33	1.85
6520476--6520700	40	5.6	40	83	2	290	23	26	24	25	2.00
6520440--6520700	80	3.3	80	83	3	303	23	26	24	25	2.00
6522964--6523098	49	2.7	51	79	3	159	25	20	25	28	1.99
6529178--6529219	17	2.3	18	80	12	50	19	19	35	26	1.95
6529188--6529244	17	3.3	17	80	9	62	14	21	40	24	1.90
6533269--6533342	27	2.8	26	84	8	87	22	18	17	40	1.91
6539999--6540106	43	2.5	43	80	5	128	26	13	21	37	1.91
6542444--6542470	13	2.1	13	100	0	54	29	0	22	48	1.51
6547595--6547687	27	3.4	27	81	0	105	30	7	22	39	1.82
6547980--6548053	28	2.6	28	80	2	94	29	32	14	22	1.94
6547980--6548059	29	2.8	27	75	9	79	27	32	17	22	1.96
6549149--6549176	4	7.0	4	100	0	56	75	0	0	25	0.81
6552130--6552220	29	3.2	29	76	6	80	26	31	14	27	1.95
6559963--6560042	40	2.0	40	95	0	142	23	23	26	26	2.00
6562712--6562790	37	2.1	37	90	0	122	25	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6562909--6563188	47	5.7	47	83	10	330	28	31	8	32	1.87
6562977--6563140	58	3.0	58	79	19	235	30	31	7	31	1.85
6562909--6563187	151	1.8	152	88	2	427	28	31	8	31	1.87
6569784--6569923	39	3.6	39	91	1	201	27	27	20	24	1.99
6575492--6575537	20	2.2	20	96	3	83	17	43	15	23	1.87
6578023--6578047	13	1.9	13	100	0	50	72	0	12	16	1.13
6579797--6579905	45	2.4	45	89	0	164	19	19	18	43	1.89
6579952--6579976	6	4.2	6	100	0	50	16	16	16	52	1.76
6580094--6580131	18	2.2	18	95	4	69	34	7	15	42	1.76
6580097--6580224	36	3.4	36	67	8	94	35	10	15	37	1.83
6580147--6580228	18	4.6	18	75	1	67	35	9	15	39	1.81
6580393--6580452	30	2.0	30	96	0	111	41	6	15	36	1.73
6584644--6584716	32	2.3	32	78	4	76	30	21	19	28	1.98
6584814--6584877	22	2.9	22	75	9	58	32	20	23	23	1.98
6585318--6585605	27	10.7	27	78	8	219	33	10	15	39	1.83
6585298--6585613	81	3.9	81	78	10	297	32	10	16	39	1.83
6585595--6585650	27	2.1	27	86	0	76	32	21	16	30	1.95
6587291--6587369	37	2.1	37	88	0	113	25	30	20	24	1.98
6587488--6588102	96	6.5	95	91	3	904	28	28	9	32	1.88
6587488--6588094	47	12.7	47	89	4	876	28	28	9	32	1.88
6588248--6588370	62	2.0	62	98	0	237	29	21	16	33	1.95
6596151--6596547	82	4.9	82	95	1	667	24	28	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6596150--6596547	122	3.3	119	86	5	564	24	28	21	25	1.99
6596151--6596548	40	9.8	41	87	5	558	24	28	21	25	1.99
6601101--6601278	28	6.4	28	89	2	234	32	28	13	25	1.94
6602693--6602878	80	2.3	80	83	9	229	27	27	20	23	1.99
6602695--6602878	40	4.6	40	83	7	205	27	27	21	23	1.99
6611427--6611659	40	5.8	40	85	5	290	24	28	22	24	1.99
6611427--6611659	82	2.9	81	87	2	326	24	28	22	24	1.99
6611427--6611659	122	1.9	122	84	3	317	24	28	22	24	1.99
6616058--6616365	126	2.5	126	87	4	410	36	19	16	27	1.93
6618640--6618745	41	2.6	40	78	8	108	23	21	24	30	1.99
6624027--6624066	21	2.0	20	85	5	53	42	20	0	37	1.52
6629754--6629804	24	2.1	24	100	0	102	50	15	7	25	1.71
6629776--6629826	17	3.1	16	78	16	50	49	13	3	33	1.61
6631489--6631568	38	2.1	38	85	0	106	35	21	15	28	1.93
6632635--6632680	22	2.1	22	84	4	58	17	36	34	10	1.85
6642268--6642347	38	2.1	38	85	0	106	35	21	15	28	1.93
6642802--6642889	45	2.0	45	86	0	122	43	10	30	15	1.80
6656089--6656159	37	1.9	37	94	0	124	25	32	19	22	1.98
6659342--6659514	43	4.0	43	78	12	167	24	17	24	32	1.97
6660044--6660069	11	2.4	11	100	0	52	11	7	34	46	1.69
6660076--6660153	24	3.4	23	77	13	88	17	24	19	38	1.93
6664585--6664885	125	2.4	126	82	1	372	28	14	18	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6676068--6676192	64	1.9	65	86	1	180	28	18	17	36	1.94
6676264--6676674	133	3.1	133	85	3	558	30	19	18	30	1.96
6676532--6677142	178	3.4	176	86	4	852	30	18	21	28	1.97
6676532--6677142	177	3.4	176	86	4	850	30	18	21	28	1.97
6676978--6677275	133	2.2	133	93	1	508	30	19	21	28	1.97
6679230--6679549	125	2.5	125	80	6	322	27	14	19	38	1.90
6679327--6679589	125	2.1	125	79	2	278	27	16	18	37	1.92
6694376--6694408	15	2.1	16	94	5	59	57	12	0	30	1.35
6698992--6699024	16	2.1	16	94	5	59	81	0	18	0	0.68
6702118--6702161	22	2.0	22	91	4	72	52	9	2	36	1.46
6702150--6702555	157	2.6	157	84	7	547	41	10	5	42	1.62
6719062--6719136	33	2.4	32	82	8	91	66	1	4	28	1.17
6730886--6731089	41	5.0	41	78	4	187	36	18	19	25	1.94
6730891--6731089	82	2.4	82	83	0	245	37	18	18	26	1.93
6732274--6732359	39	2.2	39	97	0	163	44	13	18	23	1.86
6738726--6738763	12	3.2	12	88	3	51	50	10	7	31	1.66
6738790--6738902	44	2.5	44	81	4	109	46	3	1	48	1.29
6738847--6738891	15	2.9	15	86	6	54	37	2	0	60	1.09
6749734--6749864	54	2.4	54	77	0	136	27	27	20	24	1.99
6749720--6749837	27	4.4	27	77	6	105	25	30	19	24	1.98
6760154--6760184	12	2.6	12	94	0	53	22	0	6	70	1.09
6760989--6761283	98	3.0	98	96	1	529	28	9	25	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6772858--6773230	44	8.6	44	70	12	161	29	21	22	27	1.99
6772670--6773281	218	2.8	217	89	2	933	28	21	23	26	1.99
6775286--6775482	98	2.0	98	93	2	333	26	9	26	37	1.87
6784546--6784585	20	2.0	20	85	5	53	47	12	12	27	1.77
6789243--6789332	46	2.0	46	97	0	171	38	15	4	41	1.67
6790553--6790581	15	1.9	15	100	0	58	27	6	27	37	1.82
6792406--6792478	37	1.9	38	86	2	103	38	17	13	30	1.89
6800195--6800243	23	2.2	22	79	10	55	48	16	0	34	1.46
6800790--6800841	16	3.2	16	91	0	77	28	0	34	36	1.58
6800822--6800916	45	2.1	44	84	1	118	34	5	25	34	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182