genome.fa.s21.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  11  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3682049--3682082	15	2.2	16	89	5	52	0	29	0	70	0.87
3684015--3684197	101	1.8	102	86	3	271	24	20	26	28	1.99
3684015--3684197	51	3.6	51	90	2	271	24	20	26	28	1.99
3684192--3684246	27	2.0	27	100	0	110	32	16	18	32	1.93
3689667--3689750	42	2.0	42	90	0	132	46	17	8	27	1.77
3697650--3697757	48	2.2	48	93	3	182	23	28	13	34	1.93
3705538--3705722	40	4.7	40	81	5	178	27	28	20	24	1.99
3705505--3705722	40	5.5	39	77	7	165	25	27	20	25	1.99
3714311--3714479	27	6.2	27	84	4	196	30	26	15	27	1.96
3714323--3714478	82	1.9	81	88	3	233	29	28	15	26	1.96
3716928--3716999	34	2.1	34	97	0	135	31	15	27	25	1.95
3718131--3718155	7	3.6	7	100	0	50	44	16	28	12	1.83
3732515--3732559	23	2.0	23	91	8	74	31	8	20	40	1.83
3735381--3735621	60	4.0	60	86	5	299	39	16	29	14	1.88
3735381--3735622	122	2.0	122	86	4	337	39	16	29	14	1.88
3741245--3741438	60	3.2	59	75	12	182	38	20	26	14	1.91
3741307--3741344	20	1.9	20	88	0	58	39	18	28	13	1.88
3751030--3751056	8	3.4	8	100	0	54	74	0	0	25	0.83
3772898--3772957	30	2.0	30	100	0	120	23	26	26	23	2.00
3774019--3774078	10	5.9	10	77	11	50	38	11	23	26	1.89
3774030--3774079	20	2.5	20	84	15	59	34	14	26	26	1.94
3774020--3774078	30	1.9	31	86	3	84	37	11	23	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3774083--3774158	30	2.5	30	95	0	134	34	11	38	15	1.84
3774102--3774158	11	5.5	11	82	14	77	35	10	36	17	1.84
3774940--3774964	6	4.2	6	100	0	50	0	16	0	84	0.63
3777094--3777145	25	2.1	26	82	7	63	11	15	3	69	1.32
3778465--3778524	10	5.9	10	77	11	50	38	11	23	26	1.89
3778476--3778525	20	2.5	20	84	15	59	34	14	26	26	1.94
3778466--3778524	30	1.9	31	86	3	84	37	11	23	27	1.90
3778529--3778604	30	2.5	30	95	0	134	34	11	38	15	1.84
3778548--3778604	11	5.5	11	82	14	77	35	10	36	17	1.84
3779363--3779402	16	2.4	16	87	4	53	2	20	2	75	1.04
3782604--3782742	10	13.8	10	71	15	90	35	10	30	22	1.88
3782603--3782713	30	3.7	30	79	8	102	36	11	29	22	1.90
3782684--3782742	30	2.0	30	93	0	100	37	8	35	18	1.81
3787052--3787111	28	2.2	28	87	3	86	15	30	40	15	1.87
3789050--3789086	19	1.9	19	100	0	74	37	2	16	43	1.62
3789115--3789207	41	2.3	42	90	3	145	30	4	12	52	1.58
3793266--3793465	100	2.0	100	100	0	400	27	19	18	36	1.94
3807149--3807653	254	2.0	254	96	0	920	22	19	19	38	1.94
3808288--3808411	63	2.0	62	91	1	203	32	22	20	25	1.98
3809060--3809215	78	2.0	78	94	2	278	26	15	21	35	1.93
3812515--3812699	79	2.3	81	84	7	236	24	22	27	25	2.00
3812516--3812699	40	4.6	40	83	9	216	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3812568--3812732	79	2.1	79	84	6	210	26	21	27	25	1.99
3817122--3817154	17	1.9	17	93	0	57	57	9	12	21	1.62
3827191--3827231	13	2.7	15	85	14	50	9	31	0	58	1.31
3827714--3827746	16	2.1	16	100	0	66	39	0	18	42	1.50
3832914--3833420	69	7.4	69	78	4	396	18	21	23	37	1.94
3834740--3834821	39	2.1	39	97	0	155	32	30	7	29	1.85
3836887--3836926	19	2.1	19	100	0	80	40	5	12	42	1.64
3837935--3838141	69	3.0	69	100	0	414	31	26	10	31	1.89
3839654--3839922	137	2.0	138	82	3	328	31	28	20	20	1.97
3842001--3842032	12	2.7	12	95	0	55	50	6	0	43	1.27
3842479--3842576	27	3.5	28	90	2	135	26	13	28	31	1.94
3842507--3842589	27	3.0	27	87	5	96	30	12	25	32	1.92
3851018--3851070	20	2.6	20	82	11	63	32	15	18	33	1.92
3856767--3857397	314	2.0	314	98	0	1208	32	16	19	32	1.94
3861817--3861878	31	2.0	31	93	0	106	24	24	16	35	1.95
3863143--3863171	14	2.1	14	100	0	58	24	27	13	34	1.93
3866713--3868679	555	3.6	555	91	2	3052	28	19	15	36	1.92
3870651--3870681	16	1.9	16	93	0	53	19	16	12	51	1.76
3878104--3878147	20	2.2	20	88	8	63	25	9	9	56	1.59
3891272--3891411	70	2.0	70	98	0	271	25	27	15	32	1.95
3911775--3912468	51	13.6	52	77	7	690	29	26	15	27	1.96
3911783--3912471	102	6.8	102	97	0	1231	29	26	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3912942--3913000	30	1.9	31	89	3	93	28	20	6	44	1.77
3916214--3916255	16	2.7	15	85	7	57	45	2	0	52	1.13
3923336--3923567	47	5.1	47	59	26	104	35	29	2	31	1.71
3923335--3923604	90	3.0	90	98	0	522	35	28	2	32	1.70
3928933--3928966	8	4.2	8	96	0	50	29	0	17	52	1.45
3929469--3929565	25	3.9	24	79	12	90	26	22	19	30	1.98
3929469--3929581	50	2.3	50	87	3	156	26	23	20	30	1.98
3929503--3929585	25	3.3	25	83	9	98	28	22	18	30	1.97
3932285--3932552	137	1.9	138	82	3	335	32	28	19	19	1.96
3932698--3932729	16	2.1	16	94	5	57	53	9	0	37	1.34
3942324--3942363	20	2.0	20	85	5	53	47	7	7	37	1.60
3943009--3943059	21	2.4	22	76	6	68	37	23	13	25	1.92
3955854--3956035	40	4.6	40	86	2	179	25	20	29	25	1.99
3955815--3956035	80	2.8	79	81	3	219	24	20	28	25	1.99
3955893--3956072	79	2.3	80	79	5	188	25	20	29	25	1.99
3958328--3958366	6	6.2	6	82	11	51	17	0	5	76	0.96
3958391--3958424	3	11.3	3	100	0	68	32	0	0	67	0.91
3963569--3963633	9	7.5	8	79	20	53	81	7	3	7	0.96
3963567--3963673	34	3.2	31	77	16	90	76	10	3	9	1.13
3963569--3963666	43	2.3	42	83	3	115	79	9	3	8	1.03
3963630--3963702	29	2.6	28	86	2	92	69	12	6	10	1.35
3964602--3964656	7	8.0	7	95	4	103	70	0	14	14	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3964602--3964656	20	2.7	20	97	2	101	70	0	14	14	1.16
3965882--3966278	88	4.5	87	84	0	470	29	24	22	23	1.99
3965880--3966280	175	2.3	176	82	4	479	29	23	23	23	1.99
3966564--3966812	50	5.0	50	72	4	169	33	24	19	22	1.97
3966543--3966783	100	2.4	99	88	2	338	32	24	19	22	1.97
3966550--3966821	100	2.7	100	84	1	240	33	25	18	22	1.97
3968284--3968341	6	9.2	6	80	10	53	13	5	3	77	1.07
3976770--3976876	54	2.0	54	98	0	205	38	13	7	41	1.72
3976787--3976870	26	3.2	26	62	12	62	36	13	8	41	1.74
3978346--3978396	21	2.4	22	83	6	61	7	21	1	68	1.25
3984923--3984970	21	2.3	21	85	0	60	39	0	29	31	1.57
3984932--3984973	21	2.0	21	95	0	75	40	0	30	28	1.57
3989016--3989042	14	1.9	14	100	0	54	51	7	18	22	1.70
3995636--3995668	7	4.7	7	100	0	66	60	0	0	39	0.97
3995948--3995985	17	2.2	18	90	4	60	26	13	13	47	1.79
3997614--3997639	2	13.0	2	100	0	52	50	0	0	50	1.00
4001407--4001592	50	3.6	50	82	4	201	27	22	27	21	1.99
4012419--4012508	44	2.0	44	100	0	180	37	13	15	33	1.86
4016137--4016167	15	2.1	15	93	0	53	22	19	19	38	1.93
4022615--4022657	22	2.0	22	86	4	61	74	11	0	13	1.07
4022870--4022974	55	1.9	55	84	0	138	21	19	31	27	1.97
4024029--4024111	19	4.3	19	75	4	67	44	19	25	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4027178--4027276	23	4.3	23	92	0	162	21	20	25	33	1.97
4027406--4027478	38	1.9	37	86	8	103	45	1	21	31	1.61
4027867--4027968	51	2.0	51	100	0	204	39	11	23	25	1.89
4035567--4035677	55	2.0	55	94	0	195	50	16	10	22	1.75
4037819--4037996	27	6.6	27	83	3	205	26	15	28	29	1.96
4037820--4037975	82	1.9	81	88	3	233	26	15	28	29	1.96
4037816--4037996	82	2.2	81	83	2	229	27	15	27	29	1.96
4046354--4046413	29	2.1	29	100	0	120	23	15	20	41	1.89
4057094--4057174	25	3.3	25	74	8	67	46	4	18	29	1.70
4064588--4064628	20	2.0	20	95	0	73	46	17	24	12	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182