genome.fa.s21.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  166  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50803273--50803329	18	3.2	18	75	9	62	8	10	5	75	1.18
50803307--50803417	11	9.9	11	66	17	50	11	7	7	73	1.23
50803335--50803435	4	26.2	4	71	18	54	16	3	4	74	1.15
50803403--50803435	13	2.4	14	90	10	50	24	0	0	75	0.80
50803403--50803435	7	4.7	7	88	11	50	24	0	0	75	0.80
50803335--50803462	53	2.4	53	80	11	122	19	3	5	71	1.19
50805507--50805559	16	3.3	16	76	10	63	35	24	5	33	1.79
50805748--50805845	41	2.4	41	87	1	135	32	21	17	28	1.96
50806718--50806796	25	3.1	26	77	12	76	2	24	3	69	1.17
50808584--50808637	27	2.1	26	82	6	65	55	1	1	40	1.21
50813268--50813302	17	2.0	18	88	5	54	45	11	8	34	1.71
50813625--50813734	40	2.8	41	84	5	138	34	23	17	24	1.96
50826401--50826458	23	2.6	21	74	12	62	55	3	3	37	1.34
50836018--50836055	16	2.4	17	82	13	53	55	0	0	44	0.99
50836014--50836065	15	3.6	15	80	12	56	53	0	0	46	1.00
50836134--50836185	15	3.6	15	80	12	56	53	1	0	44	1.11
50836005--50836190	59	3.1	59	70	14	191	51	4	1	43	1.31
50855351--50855375	2	12.5	2	100	0	50	0	48	0	52	1.00
50865343--50865850	126	4.1	126	84	3	616	29	17	14	38	1.89
50865346--50865844	251	2.0	249	83	3	617	28	17	14	39	1.89
50865810--50865875	28	2.4	28	86	0	96	34	12	3	50	1.55
50865822--50865872	14	3.6	14	82	10	68	35	9	0	54	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50868161--50868208	20	2.3	22	86	10	66	43	31	0	25	1.55
50874871--50874919	21	2.3	23	76	20	61	55	0	0	44	0.99
50876577--50876864	124	2.3	124	93	1	486	32	18	20	28	1.96
50877825--50877854	14	2.1	14	93	0	51	36	23	16	23	1.94
50881648--50882001	99	3.5	101	81	8	454	27	0	12	59	1.40
50882229--50882306	14	5.5	14	73	11	61	30	1	6	61	1.29
50882223--50882264	17	2.4	18	84	11	61	30	0	4	64	1.14
50886198--50886228	8	3.9	8	100	0	62	64	12	0	22	1.27
50888117--50888169	24	2.2	24	93	0	88	30	13	5	50	1.64
50888762--50888805	15	2.8	16	73	13	54	40	6	4	47	1.50
50889021--50889053	16	2.1	16	94	0	57	39	6	33	21	1.78
50889263--50889438	95	1.9	95	97	0	334	46	4	1	48	1.30
50889341--50889391	26	2.0	26	100	0	102	47	1	0	50	1.12
50892350--50892410	30	2.0	30	96	0	113	36	18	9	36	1.84
50892656--50892686	16	1.9	16	93	0	53	25	6	12	54	1.62
50892699--50892819	64	1.9	64	98	0	233	30	7	9	52	1.62
50894373--50894439	33	2.0	33	100	0	134	46	20	8	23	1.79
50904294--50904376	40	2.1	40	86	4	114	27	21	10	39	1.87
50911834--50911963	65	2.0	65	90	0	206	40	23	12	23	1.88
50918575--50918604	6	4.8	6	95	4	51	36	0	0	63	0.95
50923286--50923331	23	1.9	24	86	8	67	47	0	2	50	1.13
50923296--50923345	23	2.2	23	82	7	57	48	0	4	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50923442--50923517	16	4.8	16	73	13	61	46	0	1	52	1.08
50925190--50925241	21	2.4	22	77	6	61	34	3	9	51	1.53
50925203--50925245	21	2.0	21	95	0	77	30	4	6	58	1.45
50925870--50926022	45	3.4	45	74	0	137	38	19	17	24	1.93
50926086--50926195	34	3.2	33	80	2	121	40	11	12	35	1.80
50926077--50926227	68	2.2	69	76	8	157	39	13	13	33	1.84
50929690--50929734	24	2.0	22	86	8	63	26	22	6	44	1.77
50931446--50931518	29	2.5	30	81	2	94	17	19	12	50	1.77
50931585--50931663	41	1.9	42	92	2	133	13	20	29	36	1.91
50936677--50936889	111	1.9	111	85	1	293	33	3	13	49	1.60
50942714--50942807	31	3.0	32	66	12	95	46	15	5	31	1.69
50942691--50942807	62	1.9	62	100	0	234	46	15	6	31	1.72
50943319--50943343	2	12.5	2	100	0	50	52	0	0	48	1.00
50959443--50959484	9	4.6	9	82	14	50	50	0	4	45	1.23
50962416--50962511	37	2.6	36	81	6	111	38	15	18	27	1.91
50968676--50968759	7	12.3	7	80	14	86	39	0	46	14	1.44
50968676--50968759	19	4.1	21	81	11	86	39	0	46	14	1.44
50972811--50972837	14	1.9	14	100	0	54	66	7	0	25	1.17
50980661--50980726	35	1.9	33	90	6	105	19	12	13	54	1.70
50982180--50982314	39	3.4	40	84	3	173	14	21	18	45	1.84
50988051--50988108	22	2.6	22	81	7	64	41	17	5	36	1.72
50988585--50988907	131	2.5	131	87	3	479	25	25	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50989364--50989668	44	6.9	44	77	10	280	29	21	17	32	1.96
50989364--50989704	44	7.6	44	77	7	201	28	23	16	31	1.96
50989216--50989502	152	1.9	152	86	2	416	28	22	16	32	1.96
50994295--50994338	19	2.3	19	84	7	54	40	11	22	25	1.87
50996933--50996990	22	2.6	22	81	7	64	41	17	5	36	1.72
51000715--51000771	22	2.6	22	91	0	87	35	28	19	17	1.94
51000737--51000833	38	2.6	38	85	3	133	38	28	17	15	1.90
51003233--51003325	49	1.9	49	93	2	161	30	25	5	38	1.78
51006767--51006821	21	2.4	22	82	11	58	63	3	3	29	1.28
51006787--51006851	19	3.2	21	78	20	68	63	3	3	30	1.25
51006797--51006851	20	2.7	20	77	11	58	60	3	3	32	1.32
51007890--51007987	29	3.3	31	69	13	87	27	3	16	53	1.58
51008976--51009079	34	3.1	33	75	21	117	30	4	7	56	1.48
51009078--51009102	12	2.1	12	100	0	50	40	8	0	52	1.31
51010165--51010203	11	3.4	12	82	10	55	20	2	0	76	0.90
51011973--51012161	51	3.8	50	78	9	197	23	17	27	31	1.97
51011979--51012163	101	1.8	102	89	3	293	23	18	27	31	1.97
51015695--51015761	26	2.6	26	86	6	93	20	22	22	34	1.97
51015809--51015864	25	2.3	25	84	3	69	17	28	23	30	1.97
51015891--51015973	25	3.4	25	77	3	78	22	21	20	34	1.96
51015855--51015973	24	4.9	25	73	8	93	21	21	20	36	1.96
51023546--51023592	24	1.9	25	91	4	78	23	10	19	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51024882--51024959	26	2.9	26	86	3	111	55	10	10	24	1.64
51024887--51024968	26	3.1	26	77	11	87	56	7	9	26	1.58
51025675--51025709	13	2.7	13	100	0	70	54	0	0	45	0.99
51027440--51027512	34	2.1	34	82	2	83	35	9	15	39	1.80
51027629--51027837	43	4.9	43	75	10	178	23	17	28	30	1.97
51034492--51034704	27	7.9	27	83	0	264	19	17	19	43	1.89
51034489--51034704	81	2.7	81	88	1	299	20	17	19	42	1.89
51042475--51042520	23	2.0	24	82	4	58	32	26	0	41	1.56
51042666--51042721	3	18.7	3	84	0	76	58	0	3	37	1.15
51043466--51043515	24	2.0	24	84	3	64	54	4	0	42	1.19
51045814--51045841	9	3.1	9	100	0	56	67	10	10	10	1.42
51053714--51053910	82	2.4	82	85	4	254	45	13	13	27	1.80
51053996--51054044	23	2.1	23	92	7	82	24	8	4	63	1.40
51053909--51054120	110	1.9	108	82	8	259	38	9	11	40	1.74
51054104--51054179	39	2.0	39	87	7	111	38	2	7	51	1.45
51054019--51054268	124	2.0	126	86	1	351	43	6	11	39	1.66
51054142--51054439	87	3.5	86	77	6	280	44	8	11	36	1.69
51054170--51054439	86	3.1	84	77	4	252	46	8	11	33	1.70
51054573--51054611	14	2.8	14	84	0	51	64	0	0	35	0.94
51057337--51057671	183	1.8	184	85	5	473	34	31	8	24	1.86
51059512--51059542	10	3.1	10	95	0	53	48	9	0	41	1.36
51059740--51059806	34	1.9	35	90	3	109	44	13	8	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51060899--51061051	18	9.0	17	70	17	104	55	2	2	39	1.28
51060885--51061108	100	2.2	100	100	0	448	54	2	2	40	1.29
51064729--51064778	19	2.5	19	78	15	57	40	10	4	46	1.56
51064716--51064782	20	3.4	19	77	8	71	41	8	4	44	1.56
51065178--51065312	65	2.1	65	91	2	218	36	6	20	36	1.79
51065199--51065334	65	2.1	65	80	2	148	38	8	17	34	1.81
51074456--51074507	26	1.9	28	92	7	90	53	3	7	34	1.48
51074525--51074593	31	2.2	33	84	5	88	39	7	15	37	1.76
51079827--51079868	22	1.9	22	85	0	57	66	2	0	30	1.04
51092697--51092757	4	15.2	4	96	0	113	50	22	0	26	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182