genome.fa.s21.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  182  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55662255--55662282	2	14.0	2	100	0	56	50	0	50	0	1.00
55665867--55665900	6	5.7	6	100	0	68	14	0	0	85	0.60
55666267--55666340	31	2.4	31	84	6	89	43	8	18	29	1.79
55669559--55669602	22	2.0	22	95	0	79	68	2	9	20	1.28
55669564--55669601	11	3.5	11	79	13	51	71	2	7	18	1.23
55669560--55669602	7	6.0	7	81	5	50	69	2	9	18	1.26
55672149--55672209	25	2.4	26	78	15	65	49	3	0	47	1.18
55680644--55680684	21	2.0	21	90	0	64	29	21	29	19	1.98
55682590--55682623	16	2.1	16	88	0	50	50	14	17	17	1.79
55686424--55686450	7	3.9	7	100	0	54	59	0	0	40	0.98
55687814--55687854	21	1.9	22	85	5	57	36	0	4	58	1.20
55688643--55688703	30	2.0	30	90	6	97	45	3	11	39	1.57
55695570--55695618	14	3.4	14	86	8	55	32	8	0	59	1.27
55695582--55695624	15	2.9	15	89	3	61	32	13	0	53	1.41
55697537--55697598	30	2.1	29	87	3	88	61	4	3	30	1.33
55697606--55697661	23	2.3	24	88	11	80	57	0	1	41	1.09
55703280--55703373	47	2.0	47	95	4	172	40	12	8	38	1.74
55704499--55704529	16	1.9	16	100	0	62	25	25	9	38	1.86
55706157--55706189	18	1.9	17	88	11	50	60	27	6	6	1.44
55709291--55709351	29	2.1	29	81	6	70	39	19	13	27	1.89
55709772--55709811	22	1.9	22	85	10	57	42	7	7	42	1.61
55714232--55714298	30	2.2	31	84	7	84	38	10	10	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55716750--55716796	9	5.2	9	94	0	85	44	12	10	31	1.77
55716832--55716874	21	2.0	21	82	8	52	20	41	0	37	1.53
55718920--55718955	12	2.9	12	91	4	54	27	2	0	69	1.02
55718981--55719028	25	2.0	24	84	12	62	56	10	2	31	1.45
55726878--55727185	51	6.2	51	84	9	422	27	23	16	32	1.96
55726880--55727195	102	3.3	95	87	8	474	27	23	16	31	1.96
55730757--55730858	31	3.3	30	76	5	105	34	18	21	25	1.96
55733984--55734040	29	2.0	29	82	6	71	36	19	12	31	1.89
55745123--55745164	21	2.0	21	100	0	84	52	23	4	19	1.65
55746351--55746430	26	3.2	24	77	10	79	62	2	1	33	1.16
55746369--55746437	27	2.6	27	80	15	81	62	1	0	36	1.04
55747555--55747598	22	1.9	23	86	9	63	50	6	2	40	1.42
55749212--55749239	8	3.5	8	100	0	56	39	0	0	60	0.97
55750332--55750463	25	5.5	24	83	6	153	17	21	21	39	1.92
55750931--55750964	17	2.0	17	88	0	50	35	11	17	35	1.87
55753184--55753253	25	2.9	24	72	21	65	44	4	0	51	1.21
55754688--55754765	31	2.5	32	83	8	106	67	1	1	29	1.06
55755011--55755088	24	3.3	25	67	22	69	62	3	0	33	1.13
55768734--55768791	30	1.9	30	89	6	91	36	1	0	62	1.06
55768767--55768802	19	1.9	18	88	5	54	44	0	0	55	0.99
55774760--55774784	2	12.5	2	100	0	50	52	0	0	48	1.00
55776914--55776966	26	2.0	27	85	3	72	37	16	5	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55783467--55783516	23	2.1	23	85	3	64	42	6	0	52	1.26
55784264--55784313	20	2.5	20	76	0	55	20	8	10	62	1.52
55791066--55791107	19	2.3	19	84	12	52	66	0	4	28	1.12
55791171--55791210	20	2.0	21	85	5	55	65	2	2	30	1.19
55791574--55791615	19	2.3	18	87	4	57	35	0	2	61	1.09
55793342--55793372	15	2.0	16	93	6	55	3	51	38	6	1.44
55793392--55793513	19	6.6	18	75	10	113	36	2	0	59	1.16
55799263--55799314	25	2.1	25	82	3	61	55	0	1	42	1.10
55806940--55806987	2	24.5	2	95	4	89	0	50	0	50	1.00
55814427--55814469	22	2.0	21	86	4	59	51	4	0	44	1.22
55822244--55822270	13	2.1	13	100	0	54	33	7	14	44	1.73
55827645--55827720	37	2.1	37	92	0	125	35	18	10	35	1.85
55829589--55829618	12	2.4	13	94	5	53	36	0	36	26	1.57
55834286--55834332	21	2.2	22	92	3	78	21	19	38	21	1.94
55839967--55840007	21	2.0	21	90	0	64	19	29	21	29	1.98
55846043--55846096	27	2.0	27	88	0	81	31	14	12	40	1.84
55846925--55846958	17	2.0	17	94	0	59	44	50	0	5	1.26
55851564--55851597	17	2.0	17	94	0	59	44	50	0	5	1.26
55856073--55856125	24	2.2	24	86	0	70	54	7	3	33	1.46
55857123--55857192	23	3.2	21	84	9	86	38	41	7	12	1.71
55870306--55870548	44	5.5	44	76	2	184	27	16	23	31	1.97
55870306--55870548	88	2.8	88	78	3	231	27	16	23	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55870304--55870563	132	2.0	132	92	0	439	28	16	24	30	1.96
55870577--55870629	24	2.2	24	86	0	70	54	7	3	33	1.46
55870718--55871050	44	7.5	44	71	7	208	30	17	25	27	1.97
55870715--55871050	132	2.5	133	90	1	514	30	17	25	27	1.97
55872287--55872356	23	3.2	21	84	9	86	38	41	7	12	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182

The End!