genome.fa.s21.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  32  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10434587--10434661	30	2.5	30	93	0	123	38	1	0	60	1.06
10434598--10434657	11	5.6	11	75	13	63	43	1	0	55	1.10
10434597--10434665	11	6.7	10	74	12	50	40	1	0	57	1.07
10434990--10435024	16	2.1	17	94	5	63	51	28	11	8	1.67
10438566--10438604	16	2.4	16	91	4	60	38	2	0	58	1.12
10440774--10440836	30	2.1	30	87	0	90	58	12	3	25	1.49
10442905--10443041	25	5.5	25	78	3	114	26	16	18	37	1.92
10442905--10443041	50	2.7	50	80	2	141	26	16	18	37	1.92
10446080--10446151	34	2.1	34	97	0	135	33	9	20	36	1.86
10448191--10448351	43	3.8	42	80	3	151	32	26	16	24	1.96
10451320--10451473	56	2.7	56	88	1	227	30	9	14	46	1.75
10455446--10455687	44	5.7	43	73	9	181	27	21	22	28	1.99
10455432--10455731	129	2.3	129	89	0	456	27	20	22	30	1.98
10455528--10455726	85	2.3	88	80	4	208	29	21	20	29	1.98
10455534--10455726	44	4.5	44	74	10	164	30	20	20	28	1.98
10455810--10456339	50	10.7	50	68	4	309	25	21	22	30	1.98
10455747--10456337	199	3.0	200	85	2	762	25	21	22	30	1.99
10455747--10456339	99	6.0	99	82	3	672	25	21	22	30	1.99
10456380--10456630	90	2.8	90	90	1	387	31	22	17	28	1.96
10456380--10456622	135	1.8	135	84	8	334	32	22	17	27	1.96
10456380--10456630	45	5.6	45	82	8	296	31	22	17	28	1.96
10457084--10457185	46	2.2	44	77	6	105	52	7	11	27	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10457939--10458007	8	8.6	8	81	9	52	7	2	4	85	0.81
10457946--10458007	9	6.6	9	75	17	54	8	3	3	85	0.81
10463671--10463704	18	1.9	17	88	5	50	73	0	5	20	1.04
10466568--10466592	13	1.9	13	100	0	50	36	0	0	64	0.94
10471301--10471465	86	1.9	85	89	7	253	35	1	16	47	1.55
10471636--10471669	16	2.1	16	88	5	50	47	0	5	47	1.26
10471963--10473571	804	2.0	804	100	0	3218	39	6	19	34	1.77
10473542--10473629	40	2.2	41	83	2	106	32	7	18	40	1.79
10473833--10473933	45	2.2	45	83	0	121	20	17	19	41	1.90
10479900--10479933	16	2.1	16	88	5	50	47	0	5	47	1.26
10484598--10484643	24	1.9	24	86	8	67	50	15	17	17	1.79
10486252--10486442	25	8.1	24	69	18	82	47	25	13	14	1.79
10486273--10486332	23	2.7	23	86	2	77	41	25	16	16	1.89
10488355--10488440	25	3.5	24	68	16	68	17	24	24	33	1.96
10494374--10494436	32	2.0	31	84	9	83	20	12	28	38	1.89
10497584--10497641	24	2.4	24	82	5	73	18	31	20	29	1.97
10497740--10497811	26	2.8	26	83	4	85	19	22	22	36	1.95
10500683--10500742	8	7.0	8	80	15	59	70	1	1	26	1.07
10503430--10503514	25	3.5	24	78	10	82	21	22	21	35	1.96
10510811--10510956	25	5.8	25	89	0	193	21	24	17	35	1.95
10510807--10510956	75	2.0	75	88	0	219	22	24	18	34	1.96
10513769--10513827	30	2.0	30	89	0	91	54	6	6	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10516028--10516071	18	2.4	18	85	7	54	54	6	0	38	1.27
10516025--10516076	19	2.7	19	79	5	52	51	7	0	40	1.30
10522148--10522190	20	2.2	20	91	0	68	44	11	4	39	1.62
10522393--10522448	21	2.8	20	83	5	76	41	12	8	37	1.74
10523839--10523895	29	2.0	29	89	0	87	42	10	19	28	1.84
10524258--10524306	14	3.6	14	78	13	57	71	0	28	0	0.86
10524257--10524313	4	15.0	4	76	20	52	71	0	28	0	0.86
10524247--10524312	23	3.0	23	80	12	75	71	0	28	0	0.87
10524257--10524313	19	3.0	19	74	23	57	71	0	28	0	0.86
10526923--10527052	48	2.7	48	78	15	135	40	10	8	40	1.70
10530726--10530774	26	1.9	26	84	12	66	61	6	4	28	1.38
10530758--10530810	11	4.7	11	80	13	54	75	3	0	20	0.96
10531191--10531247	29	2.0	29	96	0	105	29	21	8	40	1.83
10532225--10532259	3	11.3	3	93	6	61	34	0	0	65	0.93
10533004--10533167	58	2.7	61	83	6	192	40	1	3	53	1.29
10534298--10534334	18	2.0	20	89	10	60	45	0	0	54	1.00
10539224--10539284	17	3.5	17	72	16	61	27	11	14	45	1.80
10539213--10539283	36	2.0	36	91	0	115	26	11	14	47	1.77
10543277--10543347	36	2.0	36	91	0	115	25	12	15	46	1.81
10545711--10545750	14	2.9	14	88	0	62	32	5	17	45	1.70
10545719--10545785	34	1.9	35	93	3	118	31	7	13	47	1.70
10545734--10545773	20	2.0	20	90	0	62	27	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10545713--10545789	14	5.0	15	72	20	61	32	7	15	44	1.75
10547234--10547276	21	2.0	21	95	0	77	41	27	16	13	1.86
10548312--10548351	15	2.7	15	84	3	55	50	7	5	37	1.53
10548319--10548384	35	1.9	34	84	6	89	48	9	7	34	1.63
10556663--10556765	43	2.4	43	93	0	170	36	8	14	39	1.77
10557474--10557515	18	2.3	18	100	0	84	38	16	23	21	1.93
10561307--10561413	48	2.3	46	87	7	148	35	5	14	43	1.69
10563364--10563396	16	2.0	17	88	5	50	30	0	9	60	1.27
10563985--10564009	11	2.3	11	100	0	50	84	0	0	16	0.63
10576311--10576417	28	3.8	28	77	6	99	34	20	18	26	1.96
10576349--10576417	29	2.4	29	85	2	95	31	18	21	27	1.97
10576293--10576467	28	6.2	28	71	11	88	32	19	17	30	1.95
10576328--10576628	57	5.2	57	76	5	239	36	19	16	27	1.93
10576368--10576658	29	10.1	29	75	5	112	36	18	15	29	1.92
10580963--10581156	59	3.3	59	100	0	388	39	4	8	46	1.55
10581138--10581165	9	3.1	9	100	0	56	32	0	10	57	1.33
10582876--10582997	62	2.0	62	82	6	149	31	18	10	39	1.85
10582954--10583016	31	2.0	31	87	0	90	38	22	9	30	1.86
10583076--10583144	25	2.8	24	77	12	68	60	2	2	33	1.26
10590333--10590359	12	2.2	12	100	0	54	40	0	7	51	1.30
10593772--10593830	19	3.1	19	90	4	91	50	8	1	38	1.43
10593818--10593846	14	2.1	14	100	0	58	51	13	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10600031--10600274	50	4.9	50	84	1	285	27	22	29	20	1.99
10605887--10605938	17	2.9	17	80	11	50	57	15	9	17	1.64
10606638--10606693	23	2.4	23	75	21	55	62	1	8	26	1.35
10606657--10606744	24	3.6	24	76	13	81	59	6	5	28	1.46
10606766--10606894	65	2.0	65	98	0	249	50	3	6	39	1.46
10607004--10607030	5	5.4	5	100	0	54	81	0	0	18	0.69
10607832--10607875	23	2.0	23	95	4	81	18	9	31	40	1.81
10608283--10608406	44	2.8	44	80	0	140	31	23	19	25	1.98
10608336--10608986	143	4.6	143	86	2	864	27	21	20	30	1.98
10617859--10617910	17	2.9	17	80	11	50	57	15	9	17	1.64
10618618--10618673	23	2.4	23	75	21	55	62	1	8	26	1.35
10618637--10618724	24	3.6	24	76	13	81	59	6	5	28	1.46
10625236--10625610	188	2.0	188	98	0	732	28	24	18	28	1.98
10625551--10626803	47	26.6	47	96	1	2192	29	28	8	33	1.86
10628025--10628883	85	10.1	85	99	0	1709	26	26	8	38	1.84
10630409--10630496	45	2.0	45	90	0	140	35	22	15	26	1.94
10630901--10631022	61	2.0	61	100	0	244	31	24	9	34	1.88
10633432--10633475	17	2.6	16	82	7	52	47	2	6	43	1.42
10642124--10642201	40	2.0	40	86	0	111	30	10	15	43	1.80
10648032--10648109	40	2.0	40	89	0	120	29	12	16	41	1.86
10654983--10655024	18	2.3	18	87	0	57	45	4	7	42	1.52
10664482--10664508	11	2.5	11	100	0	54	48	25	0	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10665194--10665313	40	3.0	40	91	0	195	32	17	31	18	1.94
10665202--10665303	20	5.2	19	68	17	64	35	17	31	15	1.92
10668230--10668780	136	4.1	136	93	0	935	35	3	15	45	1.63
10685423--10685610	64	2.9	64	88	1	288	28	5	26	39	1.79
10685917--10685975	19	3.3	19	62	13	52	16	20	35	27	1.94
10687916--10688173	125	2.1	126	95	0	464	37	7	21	32	1.82
10691062--10691091	11	2.7	11	100	0	60	6	20	43	30	1.77
10693359--10693414	26	2.2	24	75	12	58	48	0	5	46	1.25
10696642--10696681	11	3.6	11	100	0	80	45	20	17	17	1.86
10701318--10701377	26	2.3	26	78	13	63	35	5	3	56	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182