genome.fa.s21.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  178  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54029766--54030020	91	2.9	88	82	9	324	36	18	18	26	1.93
54030101--54030366	72	3.7	72	90	2	367	33	18	15	33	1.92
54030033--54030370	143	2.4	142	81	4	385	34	19	15	30	1.93
54029943--54030559	337	1.8	339	93	2	1071	35	19	14	30	1.92
54030244--54030738	193	2.6	192	92	1	792	34	20	14	30	1.93
54042515--54042955	18	24.6	18	69	20	110	44	10	11	33	1.74
54042521--54042586	16	3.9	16	78	13	53	48	10	13	27	1.75
54042516--54042964	17	25.1	17	69	14	167	44	10	11	32	1.75
54042708--54042791	22	4.0	21	82	13	95	44	8	7	40	1.62
54042915--54042963	18	2.6	19	77	6	55	46	16	12	24	1.81
54042959--54043009	18	2.9	17	77	8	57	47	7	9	35	1.66
54043504--54043569	7	8.4	8	90	10	84	0	18	0	81	0.68
54043506--54043582	14	5.1	15	83	10	86	0	18	0	81	0.68
54043515--54043565	15	3.4	15	91	5	77	0	15	0	84	0.63
54043511--54043582	23	3.2	22	86	7	92	0	18	0	81	0.68
54043712--54043737	12	2.2	12	100	0	52	0	7	7	84	0.77
54043723--54043779	19	3.2	17	80	11	62	1	3	12	82	0.87
54043723--54043779	18	3.2	18	80	9	64	1	3	12	82	0.87
54043868--54043927	24	2.5	24	86	7	79	0	33	0	66	0.92
54043856--54043927	3	24.0	3	78	16	62	0	30	0	69	0.89
54043879--54043927	13	3.9	13	75	24	52	0	36	0	63	0.95
54043896--54043924	10	2.9	10	100	0	58	0	37	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54043983--54044032	10	5.2	10	80	7	59	0	30	0	70	0.88
54043987--54044029	19	2.3	19	88	11	63	0	30	0	69	0.88
54044281--54044397	30	3.9	29	77	11	94	44	3	22	29	1.69
54044296--54044397	30	3.4	30	84	2	134	44	3	22	29	1.71
54047882--54047950	10	7.4	10	72	19	60	43	1	1	53	1.18
54048010--54048044	6	6.0	6	86	6	54	82	0	17	0	0.66
54048739--54048791	15	3.4	15	80	16	63	39	0	11	49	1.39
54048921--54049026	37	2.7	40	73	10	101	28	14	24	33	1.94
54053854--54053887	18	1.9	17	88	5	50	14	8	2	73	1.19
54054674--54054719	3	15.3	3	100	0	92	32	0	0	67	0.91
54054793--54054851	27	2.3	26	77	8	66	23	6	6	62	1.44
54060467--54060509	21	2.0	23	86	9	63	46	2	2	48	1.27
54061845--54061898	22	2.5	22	78	0	63	33	1	1	62	1.16
54066166--54066226	29	2.0	31	84	12	83	54	4	0	40	1.22
54067841--54067891	19	2.6	20	84	12	70	35	0	5	58	1.22
54076820--54076850	13	2.4	13	94	0	53	51	12	3	32	1.56
54082137--54082176	19	2.1	19	86	9	55	40	0	2	57	1.12
54088403--54088447	21	2.2	20	84	4	54	37	0	0	62	0.96
54089574--54089599	2	13.0	2	100	0	52	0	50	0	50	1.00
54091007--54091083	9	8.6	9	87	5	75	46	20	6	25	1.75
54091007--54091083	18	4.3	18	85	6	93	46	20	6	25	1.75
54091008--54091083	27	2.8	27	82	7	100	46	21	6	26	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54106661--54106704	13	3.3	13	81	15	54	61	2	0	36	1.09
54112885--54112931	23	2.0	22	84	12	58	51	0	4	44	1.21
54113629--54113748	42	2.8	43	72	11	111	31	0	7	60	1.31
54113926--54114016	13	7.2	13	68	16	57	40	0	6	52	1.27
54113953--54113984	8	4.0	8	100	0	64	50	0	0	50	1.00
54122550--54122590	16	2.5	17	84	11	59	58	0	4	36	1.20
54138645--54138690	24	1.9	24	86	8	67	45	10	4	39	1.59
54141649--54141694	9	5.0	9	81	5	56	58	4	2	34	1.30
54141649--54141694	19	2.5	19	85	3	67	58	4	2	34	1.30
54141651--54141706	28	2.0	28	82	3	67	60	3	5	30	1.36
54163454--54163977	263	2.0	263	99	0	1039	33	20	14	31	1.92
54164197--54164265	35	2.0	35	97	0	129	20	15	42	21	1.89
54164859--54164901	2	21.5	2	100	0	86	0	48	0	51	1.00
54166605--54166638	16	2.1	16	88	0	50	50	14	17	17	1.79
54169439--54169479	21	2.0	21	90	0	64	29	21	29	19	1.98
54171385--54171418	16	2.1	16	88	0	50	50	14	17	17	1.79
54184688--54184754	30	2.3	29	87	10	93	41	22	8	26	1.83
54185692--54185725	17	1.9	17	88	5	50	58	0	2	38	1.13
54187960--54188381	139	3.1	137	81	4	487	48	11	15	24	1.77
54193200--54193242	22	1.9	22	85	4	59	34	0	6	58	1.25
54193938--54194025	33	2.6	34	73	19	85	52	4	2	40	1.34
54195862--54195925	27	2.4	27	76	10	76	43	3	6	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54197068--54197118	19	2.6	20	81	6	59	29	0	3	66	1.09
54210928--54210990	18	3.8	18	66	20	55	14	42	9	33	1.78
54218769--54218821	27	2.0	28	85	7	74	50	0	3	45	1.19
54219577--54219620	18	2.4	18	80	3	52	31	2	6	59	1.36
54221196--54221220	13	1.9	13	100	0	50	80	0	0	20	0.72
54223511--54223564	24	2.2	25	83	6	65	48	1	3	46	1.30
54223546--54223585	16	2.5	16	91	0	62	47	2	7	42	1.45
54223574--54223717	68	2.1	67	92	2	245	40	5	9	44	1.59
54223782--54223836	27	2.0	29	82	13	71	60	1	1	36	1.18
54224183--54224235	18	2.9	18	82	2	61	32	5	0	62	1.19
54226915--54226948	16	2.1	16	94	0	59	70	0	8	20	1.13
54231541--54231576	18	2.0	18	88	0	54	38	0	5	55	1.23
54231610--54231644	18	1.9	18	88	11	54	57	2	0	40	1.14
54235419--54235499	38	2.1	38	81	0	90	34	12	18	34	1.88
54240668--54240706	14	2.9	14	88	3	53	53	2	0	43	1.14
54241889--54241957	16	4.2	16	94	3	120	26	0	36	37	1.57
54241889--54241957	33	2.1	32	94	2	120	26	0	36	37	1.57
54242193--54242227	18	2.0	17	88	5	52	54	0	0	45	0.99
54242176--54242599	120	3.5	120	96	0	794	48	5	1	44	1.36
54242433--54242467	18	2.0	17	88	5	52	54	0	0	45	0.99
54242553--54242587	18	2.0	17	88	5	52	54	0	0	45	0.99
54242699--54242740	15	2.9	15	82	10	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54242080--54243105	517	2.0	517	94	0	1786	47	4	3	44	1.40
54242830--54242864	18	2.0	17	88	5	52	54	0	0	45	0.99
54242414--54242953	277	1.9	276	86	4	749	47	4	2	45	1.39
54243068--54243104	16	2.2	17	86	13	51	54	0	2	43	1.14
54242696--54243105	120	3.4	120	96	0	741	49	4	2	43	1.36
54243146--54243199	15	3.9	15	72	16	53	51	1	0	46	1.11
54243151--54243286	71	1.9	73	92	4	231	47	3	2	46	1.35
54249247--54249282	17	2.1	18	89	5	56	44	2	0	52	1.15
54250472--54250514	18	2.5	17	85	7	52	72	4	0	23	1.04
54252544--54252573	12	2.4	13	88	11	53	86	0	13	0	0.57
54260743--54260796	25	2.1	26	83	10	67	44	5	9	40	1.60
54262111--54262159	25	2.0	25	87	0	71	59	0	0	40	0.98
54268513--54268556	20	2.2	20	100	0	88	59	4	13	22	1.53
54271614--54271680	31	2.2	31	86	0	89	44	13	8	32	1.75
54275042--54275081	19	2.1	19	86	9	55	40	7	0	52	1.30
54277339--54277377	19	2.1	19	90	4	62	61	2	5	30	1.31
54294896--54294929	16	2.1	16	88	0	50	35	0	8	55	1.31
54295062--54295251	43	4.5	42	85	2	263	24	17	31	26	1.97
54295064--54295251	85	2.2	86	89	0	279	25	18	30	26	1.98
54296928--54296998	19	3.6	19	68	11	54	45	4	5	45	1.46
54297430--54297475	19	2.4	19	92	3	74	43	17	15	23	1.87
54297471--54297625	77	2.0	77	100	0	310	33	27	12	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54315750--54315810	20	3.0	20	78	2	68	37	3	3	55	1.32
54322861--54322889	13	2.2	13	100	0	58	27	27	20	24	1.99
54324335--54324366	5	6.6	5	92	7	57	40	0	0	59	0.97
54324335--54324366	14	2.2	15	94	5	57	40	0	0	59	0.97
54325888--54325932	23	2.0	23	86	8	65	48	0	15	35	1.45
54334913--54334942	14	2.1	15	93	6	53	56	0	3	40	1.16
54335691--54335769	26	2.7	29	73	15	74	48	5	10	36	1.59
54336011--54336125	11	10.7	11	76	11	78	37	2	0	60	1.11
54335963--54336115	43	3.7	42	93	3	240	34	2	0	62	1.14
54336022--54336089	32	2.1	32	83	5	84	32	2	0	64	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182