genome.fa.s21.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  29  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9590370--9590418	20	2.5	20	86	0	71	51	0	4	44	1.20
9594528--9594557	10	3.0	10	100	0	60	70	0	0	30	0.88
9595478--9595525	21	2.2	22	82	10	55	56	4	4	35	1.38
9596010--9596085	29	2.7	28	87	4	107	38	9	19	32	1.84
9602505--9602634	50	2.6	49	88	1	179	29	26	16	26	1.97
9602505--9602688	101	1.8	99	84	2	251	28	25	18	27	1.98
9605089--9605261	43	4.0	42	74	11	127	34	26	16	23	1.96
9605784--9605822	19	2.0	20	85	9	55	48	23	2	25	1.63
9606901--9606933	11	2.9	11	95	4	57	69	0	0	30	0.88
9609577--9609626	17	2.7	20	78	18	70	10	0	44	46	1.37
9614216--9614265	17	2.7	20	78	18	70	10	0	44	46	1.37
9622337--9622390	26	2.1	26	100	0	108	18	7	12	61	1.54
9623976--9624017	18	2.3	18	91	0	66	21	28	7	42	1.79
9626504--9626598	27	3.5	26	84	8	127	40	18	22	18	1.92
9626504--9626615	27	4.1	27	80	7	111	37	20	23	18	1.94
9626504--9626615	54	2.1	54	86	3	154	37	20	23	18	1.94
9628021--9628077	25	2.3	24	93	6	96	19	38	5	36	1.74
9628021--9628084	25	2.6	25	90	5	85	17	42	4	35	1.70
9630368--9630598	126	1.8	126	91	1	383	25	20	20	34	1.96
9630522--9630673	77	2.0	78	92	1	252	19	19	23	37	1.94
9631191--9631220	15	2.0	15	93	0	51	50	36	0	13	1.42
9631611--9631636	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9632130--9632163	18	1.9	17	88	5	50	41	8	8	41	1.67
9632429--9632464	2	18.0	2	94	0	63	47	0	0	52	1.00
9641126--9641155	8	3.6	8	91	8	51	73	13	0	13	1.10
9651281--9651328	3	16.3	3	79	12	55	64	0	35	0	0.94
9651288--9651328	12	3.5	11	90	9	64	60	0	39	0	0.96
9652481--9652520	21	1.9	21	89	0	62	12	22	30	35	1.91
9653184--9653361	43	4.2	43	85	2	229	43	19	8	28	1.80
9653188--9653361	85	2.1	83	86	4	242	44	18	8	28	1.80
9655088--9655208	47	2.5	48	89	1	181	45	18	11	24	1.82
9655101--9655208	48	2.3	47	86	1	153	46	18	10	25	1.80
9655245--9655340	6	16.0	6	78	0	84	56	14	6	22	1.61
9655243--9655340	36	2.7	37	79	3	101	55	15	6	23	1.63
9655352--9655410	12	4.9	12	89	0	82	57	10	10	22	1.61
9655352--9655410	24	2.5	24	88	0	91	57	10	10	22	1.61
9655259--9655410	48	3.0	47	75	12	133	53	11	9	25	1.66
9655860--9655899	21	1.9	21	94	0	71	27	30	15	27	1.96
9662782--9662817	13	2.8	14	84	16	51	27	25	0	47	1.52
9662769--9662809	18	2.2	19	87	12	59	29	24	0	46	1.53
9665914--9666136	40	5.6	39	82	7	209	26	27	21	25	1.99
9666442--9666520	29	2.7	29	84	5	97	27	32	13	25	1.94
9667688--9667750	32	2.0	32	96	0	117	41	26	11	20	1.86
9674776--9674881	55	1.9	55	92	0	176	41	17	4	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9680597--9680633	17	2.2	17	95	0	65	51	8	18	21	1.72
9695118--9695325	40	5.2	40	82	5	233	34	15	28	21	1.94
9697306--9697457	27	5.6	27	93	3	241	30	28	13	26	1.94
9697306--9697457	55	2.8	55	94	0	259	30	28	13	26	1.94
9702605--9702910	91	3.6	86	74	7	221	30	14	11	43	1.81
9703818--9703894	29	2.5	31	87	4	104	25	14	12	46	1.80
9704229--9704272	21	2.1	21	100	0	88	31	9	13	45	1.75
9705082--9705126	10	4.5	10	83	10	65	77	2	11	8	1.07
9705082--9705126	21	2.2	20	88	7	65	77	2	11	8	1.07
9705082--9705129	15	3.2	15	74	11	53	77	2	12	8	1.08
9705287--9705355	29	2.3	29	85	5	84	49	14	14	21	1.79
9713353--9713381	11	2.7	11	94	5	51	44	0	13	41	1.44
9713412--9713598	93	2.0	93	88	0	275	32	22	14	30	1.94
9717273--9717308	16	2.1	18	90	10	58	0	33	0	66	0.92
9720866--9720993	65	2.0	66	90	4	206	35	8	3	52	1.48
9721034--9721078	14	2.9	16	77	16	58	46	6	2	44	1.42
9731708--9731758	21	2.4	21	87	6	68	31	3	0	64	1.11
9735143--9735192	24	2.1	24	84	0	64	40	18	24	18	1.91
9738109--9738151	14	3.2	13	78	15	52	53	0	37	9	1.33
9743330--9744016	44	15.8	43	66	16	184	30	19	21	28	1.98
9743155--9743651	217	2.3	217	90	1	764	30	19	21	29	1.97
9743461--9743578	45	2.7	45	80	16	131	30	16	24	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9743459--9743821	177	2.1	177	89	0	546	30	18	22	29	1.97
9743241--9744003	394	1.9	394	88	0	1141	30	19	22	28	1.98
9743767--9744022	89	3.0	83	74	15	268	30	20	21	27	1.98
9744000--9744048	24	2.0	24	92	0	80	32	20	24	22	1.98
9744047--9744385	44	7.8	44	73	13	242	30	19	22	28	1.98
9743723--9744328	325	1.9	325	90	0	980	30	19	21	28	1.98
9744369--9744419	24	2.1	24	92	0	84	31	17	27	23	1.97
9746597--9746627	15	2.1	15	93	0	53	22	12	16	48	1.80
9748268--9748341	30	2.4	30	86	2	94	39	14	8	37	1.76
9754887--9754921	18	1.9	18	88	0	52	45	0	2	51	1.16
9755274--9755480	103	2.0	105	90	1	328	55	7	8	28	1.56
9756318--9756397	7	11.4	7	100	0	160	30	13	0	56	1.38
9757724--9757789	27	2.5	26	87	4	89	40	19	0	39	1.52
9757817--9757869	27	2.0	27	84	0	70	35	24	1	37	1.67
9757724--9757870	13	11.2	13	68	8	64	35	21	3	40	1.70
9759712--9759892	63	2.9	63	78	3	195	35	33	6	25	1.81
9761310--9761534	40	5.7	40	85	5	269	25	28	21	24	1.99
9761312--9761534	119	1.9	120	84	6	301	25	27	21	24	1.99
9765546--9765609	24	2.7	24	82	2	67	28	7	7	56	1.56
9765930--9766057	43	3.0	43	81	2	123	27	26	18	27	1.98
9765992--9766093	43	2.4	43	86	0	132	29	25	17	27	1.98
9768079--9768109	16	2.0	16	93	6	55	61	6	0	32	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9770258--9770661	132	3.0	138	88	8	614	29	14	13	41	1.84
9770527--9770748	101	2.2	101	95	1	410	29	13	13	44	1.81
9770395--9770849	240	1.9	233	91	4	750	30	15	13	41	1.85
9770803--9770894	44	2.1	44	93	0	157	36	14	10	38	1.81
9771311--9771376	22	3.1	22	76	8	57	31	43	1	22	1.62
9771336--9771394	21	2.7	22	82	10	68	38	40	0	20	1.53
9771622--9772114	114	4.3	114	92	1	783	25	25	23	25	2.00
9776425--9776453	7	4.3	7	95	4	51	89	0	10	0	0.48
9776396--9776464	37	1.9	35	88	5	102	79	5	8	5	1.04
9776394--9776473	37	2.2	36	78	12	101	76	7	8	7	1.17
9776412--9776500	21	4.6	20	70	16	53	75	6	10	7	1.19
9777304--9777367	7	9.3	7	85	14	89	68	0	15	15	1.21
9777307--9777367	27	2.2	27	85	11	88	70	0	14	14	1.17
9778617--9779497	129	6.8	129	91	1	1402	31	19	23	25	1.98
9779569--9779902	44	7.6	44	70	17	178	26	21	26	24	1.99
9779570--9779696	45	2.8	45	79	11	145	24	21	29	24	1.99
9779570--9779733	89	1.8	89	83	5	215	25	22	28	23	1.99
9779483--9780008	218	2.4	219	87	1	772	28	20	24	26	1.99
9783232--9783268	9	4.1	9	85	0	56	32	10	10	45	1.74
9787938--9787971	16	2.2	15	89	5	50	58	0	2	38	1.13
9793116--9793483	23	15.9	23	72	12	200	39	17	14	29	1.89
9793200--9793353	69	2.2	68	90	1	236	39	18	15	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9793241--9793483	92	2.6	92	87	4	366	40	16	13	28	1.88
9793108--9793468	161	2.2	163	92	1	600	39	16	15	28	1.90
9793111--9793477	46	7.9	46	73	13	295	38	16	15	28	1.89
9794173--9794299	28	4.5	28	85	3	150	30	22	12	33	1.92
9807130--9807161	14	2.3	14	94	0	55	21	18	9	50	1.75
9810481--9810532	24	2.2	24	89	0	77	55	9	1	32	1.43
9812269--9812320	24	2.2	24	89	0	77	55	9	1	32	1.43
9816697--9816754	16	3.5	16	72	9	62	62	5	0	32	1.18
9817974--9818030	29	2.0	29	89	0	87	36	29	8	24	1.86
9818458--9818571	53	2.1	54	91	3	194	37	19	13	29	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182