genome.fa.s21.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  50  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15592050--15592099	23	2.2	23	82	13	59	64	0	0	36	0.94
15597101--15597133	17	1.9	17	93	0	57	42	0	15	42	1.46
15597124--15597157	9	3.8	9	84	0	50	47	0	2	50	1.16
15598168--15598200	17	1.9	17	93	0	57	39	12	6	42	1.67
15600386--15600504	24	5.0	24	82	6	134	27	5	20	46	1.73
15600437--15600512	24	3.2	24	76	14	84	26	5	21	47	1.71
15600684--15600777	32	3.0	31	82	4	100	25	20	15	38	1.92
15600987--15601074	46	1.9	46	80	0	104	23	20	19	36	1.95
15604312--15604413	51	2.0	51	96	0	186	37	17	23	21	1.94
15608036--15608150	60	1.9	60	87	0	167	40	26	25	8	1.84
15608031--15608151	20	6.1	20	82	0	143	41	25	24	8	1.83
15622510--15622543	13	2.6	14	86	13	54	23	17	11	47	1.81
15627088--15627193	54	2.0	54	94	0	185	30	25	17	26	1.98
15639321--15639385	28	2.3	28	76	5	69	38	16	16	27	1.91
15639731--15639776	20	2.2	20	84	3	56	58	4	0	36	1.18
15642116--15642403	90	3.2	89	86	5	384	36	14	25	23	1.93
15642196--15642459	90	2.9	90	86	4	266	39	14	22	23	1.91
15642265--15642457	30	6.4	29	73	9	138	40	14	23	21	1.90
15642449--15642517	30	2.3	30	84	0	84	37	10	26	26	1.88
15648039--15648080	21	2.0	21	86	9	59	35	21	7	35	1.81
15649148--15649189	12	3.2	13	83	12	59	61	2	2	33	1.21
15649149--15649190	14	2.9	14	85	3	57	64	2	2	30	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15649430--15649464	18	1.9	18	88	11	54	57	5	0	37	1.23
15649451--15649485	15	2.3	15	95	0	61	51	5	5	37	1.50
15651000--15651623	100	6.2	100	87	2	801	23	19	23	32	1.98
15650962--15651561	50	12.0	49	73	3	403	23	19	24	33	1.97
15651643--15651729	44	2.0	44	74	0	75	24	19	21	34	1.96
15651778--15651900	44	2.8	44	86	2	167	26	23	20	29	1.99
15658315--15658385	36	2.0	36	97	0	133	40	5	22	30	1.77
15658944--15658985	12	3.2	13	83	12	59	61	2	2	33	1.21
15658945--15658986	14	2.9	14	85	3	57	64	2	2	30	1.19
15659252--15659286	15	2.3	15	95	0	61	51	5	5	37	1.50
15660761--15661556	50	15.9	50	70	2	425	23	19	23	32	1.98
15660816--15661621	100	8.1	100	85	2	1055	23	20	23	32	1.98
15661641--15662181	44	11.6	44	68	17	267	28	20	18	32	1.96
15661641--15662149	142	3.6	142	92	1	833	28	20	18	33	1.96
15667140--15667612	50	9.5	50	70	5	276	23	20	21	33	1.97
15667131--15667678	100	5.5	100	83	1	634	24	21	21	32	1.98
15667131--15667612	200	2.4	200	90	2	736	23	20	22	33	1.97
15667131--15667678	200	2.7	199	86	2	724	24	21	21	32	1.98
15671344--15671399	28	2.0	28	96	0	103	30	16	17	35	1.92
15671821--15671882	30	2.1	30	90	6	99	30	6	12	50	1.66
15675697--15675733	18	2.0	19	89	5	58	5	43	0	51	1.24
15688740--15688944	27	7.6	28	86	4	226	43	19	18	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15688751--15689165	54	7.5	54	77	10	347	45	20	17	17	1.86
15688765--15689165	81	4.8	81	77	12	364	45	19	17	17	1.86
15688954--15689165	27	7.9	27	82	7	238	46	20	16	16	1.84
15712129--15712346	79	2.7	79	81	8	230	25	22	26	25	2.00
15712130--15712312	40	4.6	40	82	9	205	25	22	27	24	2.00
15721543--15721857	79	4.0	79	98	0	603	35	20	7	35	1.82
15730249--15730285	18	2.0	19	89	5	58	5	40	0	54	1.24
15734187--15734237	25	2.0	25	92	0	84	0	27	19	52	1.46
15751813--15752117	149	2.0	149	96	0	565	33	18	17	30	1.94
15753392--15753437	3	16.0	3	84	8	60	0	36	0	63	0.95
15753398--15753437	14	2.9	14	96	0	71	0	37	0	62	0.95
15753392--15753437	14	3.2	15	84	12	69	0	36	0	63	0.95
15757315--15757392	30	2.6	30	83	0	102	24	14	28	33	1.94
15760009--15760045	16	2.2	17	90	4	58	51	0	8	40	1.32
15761139--15761572	222	2.0	221	93	0	742	35	19	10	33	1.87
15767692--15767775	28	3.0	28	91	0	141	32	19	21	27	1.97
15768168--15768832	27	25.0	27	81	6	374	19	20	21	38	1.94
15768171--15768838	54	12.6	54	82	3	748	19	20	22	38	1.94
15768159--15768838	81	8.5	80	81	6	654	19	20	22	37	1.94
15768643--15768682	20	2.0	20	95	0	71	17	20	22	40	1.92
15768171--15768763	107	5.6	100	77	11	397	19	20	22	37	1.94
15777271--15777327	24	2.4	24	90	0	87	47	8	5	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15777283--15777334	24	2.2	24	92	0	86	51	3	3	40	1.38
15780821--15780908	42	2.1	42	82	4	106	25	26	27	21	1.99
15787980--15788016	11	3.1	13	81	18	53	13	0	8	78	0.96
15787980--15788029	25	2.1	24	85	7	66	16	0	8	76	1.02
15787997--15788064	30	2.2	31	82	10	77	20	2	5	70	1.21
15788958--15788993	16	2.1	18	90	10	58	72	2	2	22	1.11
15808466--15808510	24	1.9	23	86	4	63	24	2	2	71	1.09
15816779--15816962	30	6.1	30	93	0	305	26	24	6	42	1.78
15821482--15821605	30	4.1	30	93	1	194	25	23	6	44	1.77
15821492--15821599	15	7.2	15	65	12	69	25	21	7	45	1.78
15838256--15838280	13	1.9	13	100	0	50	32	4	16	48	1.64
15846915--15846975	32	1.9	32	83	12	81	49	1	4	44	1.33
15846934--15846975	20	2.1	20	86	0	57	47	0	7	45	1.30
15852879--15853114	114	2.1	113	92	1	393	35	9	27	27	1.87
15858142--15858177	15	2.4	15	90	0	54	25	47	2	25	1.65
15859227--15859336	38	3.0	36	84	8	143	50	22	5	21	1.69
15859527--15859561	16	2.2	16	90	10	54	57	5	31	5	1.46
15859620--15859717	48	2.0	48	86	9	135	53	5	28	13	1.61
15859650--15859717	23	2.8	24	64	16	59	50	5	29	14	1.67
15876318--15876378	12	4.8	12	86	9	68	80	0	19	0	0.72
15876330--15876386	6	9.2	6	86	7	78	77	0	21	1	0.86
15877805--15878635	44	19.2	44	69	13	255	30	20	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15877805--15878626	217	3.8	217	93	0	1335	30	20	21	26	1.98
15878431--15878668	128	1.9	128	79	7	277	30	21	21	27	1.98
15878843--15878955	19	5.8	19	85	4	163	38	10	15	34	1.83
15878844--15878950	40	2.7	40	92	2	173	39	11	14	34	1.82
15879928--15880120	98	2.0	98	94	0	341	26	10	25	37	1.88
15881049--15881094	16	2.7	17	75	18	51	63	0	36	0	0.95
15894602--15894730	62	2.1	63	94	4	226	41	6	3	47	1.49
15894721--15894764	22	1.9	23	86	9	63	40	9	4	45	1.56
15894669--15894857	92	2.1	91	95	3	344	42	7	3	46	1.49
15894813--15894909	21	4.5	22	70	6	63	42	10	3	44	1.54
15894854--15894887	15	2.2	16	94	5	61	44	11	0	44	1.40
15902417--15902557	72	2.0	72	88	2	212	39	12	13	34	1.83
15915062--15915164	52	2.0	51	96	0	179	29	21	5	42	1.76
15918558--15918596	16	2.5	16	87	4	53	74	0	0	25	0.82
15918561--15918620	28	2.1	28	81	3	66	65	5	0	30	1.14
15921141--15921210	29	2.4	29	75	0	77	21	18	35	24	1.95
15922564--15922631	9	7.6	9	76	12	59	29	8	19	42	1.81
15922547--15922631	27	3.1	27	86	3	109	28	8	21	42	1.81
15922581--15922631	18	2.8	18	90	0	75	27	7	21	43	1.80
15939095--15939136	19	2.2	19	95	0	75	30	23	9	35	1.87
15953879--15954008	30	4.3	30	84	0	152	28	26	9	36	1.87
15955069--15955145	31	2.5	31	81	8	88	31	16	15	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15961793--15961907	31	3.8	30	77	6	99	22	14	22	40	1.91
15963994--15964034	21	1.9	21	90	5	64	36	9	29	24	1.87
15967199--15967235	9	4.1	9	92	0	65	29	10	13	45	1.77
15968128--15968165	19	2.0	19	94	0	67	34	31	7	26	1.85
15968518--15968582	27	2.4	26	85	12	87	29	1	36	32	1.67
15968545--15968702	51	2.9	54	77	16	175	38	1	33	26	1.65
15974222--15974250	1	29.0	1	100	0	58	0	0	0	100	0.00
15974736--15974770	2	17.5	2	93	0	61	0	2	48	48	1.16
15976011--15976049	21	1.9	20	89	5	60	41	10	2	46	1.51
15978508--15978704	89	2.3	87	82	11	219	39	18	7	35	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182