genome.fa.s21.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  115  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35132106--35132243	69	2.0	69	97	0	258	23	20	34	21	1.96
35132447--35132656	105	2.0	106	96	0	386	21	19	26	32	1.97
35137875--35138083	40	5.2	40	100	0	418	22	20	30	27	1.98
35146053--35146105	3	17.7	3	96	0	97	30	0	35	33	1.58
35149762--35150004	50	4.8	50	94	0	414	23	22	32	20	1.98
35153164--35153321	42	3.7	43	85	5	187	33	21	21	23	1.97
35153681--35153730	21	2.4	21	89	0	82	4	38	18	40	1.69
35159187--35159336	55	2.8	54	80	4	149	26	15	29	28	1.96
35159159--35159336	27	6.6	27	77	6	146	25	15	28	30	1.96
35159160--35159315	82	1.9	81	81	6	190	25	16	28	30	1.96
35166374--35166551	27	6.6	26	83	6	178	26	15	28	29	1.96
35166375--35166530	82	1.9	81	88	3	233	26	15	28	29	1.96
35166371--35166551	82	2.2	81	83	2	229	26	15	28	29	1.96
35168774--35168856	25	3.3	25	70	0	76	33	14	25	26	1.94
35168837--35169017	73	2.5	72	78	6	193	35	22	23	18	1.96
35168969--35169043	26	2.9	26	84	4	80	37	22	22	17	1.94
35173390--35173688	40	7.5	39	87	4	379	25	27	24	22	2.00
35192263--35192440	94	1.9	94	94	0	311	22	27	20	29	1.99
35193457--35193553	40	2.4	40	89	3	142	27	27	20	23	1.99
35193506--35193596	47	1.9	47	90	0	146	26	27	21	24	1.99
35193938--35193969	16	2.0	16	100	0	64	56	6	6	31	1.49
35197268--35197409	29	4.9	29	80	3	169	36	14	27	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35197244--35197410	87	1.9	88	91	1	273	35	14	28	22	1.93
35198065--35198122	24	2.4	24	97	0	107	18	3	29	48	1.65
35201208--35201256	20	2.5	20	93	0	80	34	2	24	38	1.67
35215505--35215768	79	3.3	80	89	4	376	25	26	22	25	2.00
35215505--35215768	40	6.7	40	81	9	317	25	26	22	25	2.00
35222563--35222617	27	2.0	27	100	0	110	36	0	7	56	1.27
35232139--35232316	88	2.0	88	98	0	347	29	20	13	36	1.91
35232361--35232473	57	2.0	57	96	0	208	23	27	20	28	1.99
35233527--35233704	27	6.6	27	82	3	178	29	28	14	26	1.95
35237755--35237857	37	2.8	37	89	0	161	23	19	32	25	1.98
35242429--35242518	29	3.1	29	85	4	121	30	12	26	31	1.92
35250231--35250308	26	3.0	27	84	7	115	37	24	20	17	1.94
35250237--35250340	26	4.0	26	83	1	109	36	24	22	17	1.94
35250293--35250361	27	2.6	27	92	0	111	36	21	23	18	1.95
35254409--35254469	30	2.0	30	83	0	77	31	22	8	37	1.84
35265725--35265779	21	2.6	21	85	0	83	25	27	30	16	1.96
35274395--35274433	19	2.1	19	85	9	53	28	23	2	46	1.65
35279736--35279760	2	12.5	2	100	0	50	52	0	48	0	1.00
35285292--35285338	18	2.5	19	83	16	62	44	17	12	25	1.84
35285784--35285812	13	2.2	13	100	0	58	62	10	0	27	1.28
35286037--35286082	10	4.5	10	86	5	65	41	19	23	15	1.89
35287174--35287225	21	2.5	21	80	0	59	5	25	1	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35294482--35294527	18	2.6	18	96	0	83	63	6	2	28	1.31
35307254--35307373	39	3.1	39	90	0	177	24	26	20	29	1.99
35308662--35308702	21	2.0	21	90	9	66	34	24	2	39	1.69
35311640--35311857	45	5.0	45	89	5	263	27	28	18	24	1.98
35318215--35318412	65	3.0	65	98	0	378	30	10	21	37	1.87
35318763--35318922	86	1.9	86	85	3	225	26	19	25	28	1.99
35355648--35355892	47	5.1	47	80	6	274	33	9	28	27	1.89
35355648--35355892	97	2.5	97	84	3	323	33	9	28	27	1.89
35355866--35356002	46	3.0	46	85	0	193	34	8	30	26	1.87
35357932--35358088	68	2.3	68	83	3	192	41	17	14	26	1.88
35361082--35361263	40	4.6	41	83	8	225	24	21	28	25	1.99
35361132--35361296	79	2.1	79	83	6	201	25	20	27	26	1.99
35373498--35373691	50	3.9	50	84	5	241	29	25	18	26	1.98
35373511--35373694	101	1.8	99	88	4	280	29	26	17	26	1.97
35376173--35376239	25	2.7	25	80	0	80	47	11	19	20	1.81
35376356--35376429	27	2.8	26	85	4	94	37	17	24	20	1.93
35376381--35376436	26	2.1	27	86	3	78	39	25	21	14	1.91
35377187--35377265	6	12.8	6	70	15	54	46	12	21	18	1.82
35377199--35377265	25	2.7	25	88	0	98	44	13	22	19	1.85
35377383--35377460	26	2.9	27	83	7	88	37	20	24	17	1.94
35377624--35377685	22	2.8	22	76	9	63	32	25	24	17	1.97
35378121--35378544	27	15.7	27	89	1	580	23	21	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35378121--35378544	108	3.9	108	93	0	668	23	21	18	36	1.95
35378583--35378766	27	6.9	27	77	10	146	29	9	22	38	1.86
35378601--35378766	53	3.1	53	78	5	165	29	9	21	39	1.85
35378707--35378766	26	2.3	25	83	13	68	26	8	23	41	1.82
35387421--35387639	48	4.5	48	84	4	244	26	21	30	21	1.99
35390905--35390965	30	2.0	30	87	0	86	39	6	22	31	1.80
35392935--35393004	27	2.6	27	95	2	113	31	28	12	27	1.93
35392935--35393032	28	3.5	28	90	2	135	31	28	13	26	1.94
35397612--35397714	51	2.0	51	100	0	206	29	25	9	35	1.88
35410723--35410757	17	2.1	17	88	0	52	40	20	5	34	1.76
35411134--35411205	19	3.5	19	75	18	65	52	0	2	44	1.15
35411149--35411194	23	2.0	23	95	0	83	58	0	4	36	1.18
35411798--35411832	18	1.9	18	88	0	52	20	2	11	65	1.37
35412417--35412472	18	3.1	18	82	7	60	35	0	3	60	1.14
35412967--35413040	31	2.5	28	79	14	76	31	1	2	64	1.15
35415985--35416098	39	2.9	40	85	5	151	44	19	1	34	1.61
35416133--35416175	15	2.9	15	83	13	54	46	20	0	32	1.51
35424016--35424041	7	3.7	7	100	0	52	15	69	0	15	1.20
35424780--35424806	5	5.4	5	100	0	54	18	18	18	44	1.87
35431886--35431928	19	2.3	19	84	11	54	60	2	4	32	1.30
35436432--35436479	25	1.9	25	82	0	60	22	22	33	20	1.97
35439179--35439247	27	2.5	28	74	4	70	71	0	23	5	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35445958--35446053	44	2.2	44	94	1	165	40	12	20	26	1.88
35446071--35446316	50	4.9	50	86	0	314	25	19	31	22	1.98
35451504--35451553	3	16.7	3	82	0	55	60	4	32	4	1.34
35451860--35451950	46	2.0	46	93	0	155	24	7	16	51	1.70
35461714--35461755	21	2.0	21	81	9	50	64	2	2	30	1.19
35462519--35462575	27	2.1	27	90	0	87	24	17	29	28	1.97
35466007--35466068	31	2.0	31	93	0	106	25	24	20	29	1.99
35473676--35473727	24	2.2	24	89	0	77	53	7	3	34	1.48
35475963--35476017	23	2.4	23	81	6	67	23	0	5	70	1.07
35476697--35476734	14	2.7	14	88	8	51	52	26	0	21	1.47
35476831--35476884	21	2.5	22	87	3	74	51	27	1	18	1.56
35482280--35482315	11	3.3	11	88	0	54	22	8	27	41	1.82
35485345--35485392	6	7.7	6	78	17	53	81	6	0	12	0.87
35486904--35486948	3	15.0	3	100	0	90	66	0	0	33	0.92
35489712--35489762	3	16.7	3	77	18	52	72	0	0	27	0.85
35489712--35489747	7	5.4	7	90	9	58	72	0	0	27	0.85
35489713--35489760	23	2.0	24	88	11	73	75	0	0	25	0.81
35496200--35496257	23	2.5	24	80	5	73	72	0	3	24	1.00
35501071--35501104	15	2.3	15	94	0	59	35	8	20	35	1.84
35501192--35501239	21	2.3	21	79	10	55	58	4	8	29	1.46
35505779--35505860	41	2.0	41	97	0	155	28	10	2	58	1.45
35506021--35506055	10	3.6	10	88	7	54	22	0	5	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35506422--35506588	82	2.0	83	97	1	318	25	12	15	46	1.81
35506430--35506616	82	2.3	82	89	4	270	27	14	16	41	1.87
35507505--35507565	9	6.4	10	74	14	58	65	1	1	31	1.12
35507500--35507565	19	3.5	19	81	6	73	63	1	3	31	1.19
35508560--35508643	42	2.0	42	97	0	159	50	10	2	36	1.50
35509162--35509274	54	2.1	54	100	0	226	42	1	10	45	1.49
35509273--35509314	15	2.7	16	82	14	52	45	0	2	52	1.13
35509264--35509305	15	2.9	15	82	10	52	47	0	0	52	1.00
35509440--35509549	45	2.6	43	79	11	120	32	29	5	32	1.80
35509530--35509582	16	3.3	16	91	0	88	33	37	0	28	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182