genome.fa.s21.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  66  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20129507--20129660	70	2.2	70	97	0	290	34	25	9	30	1.87
20134102--20134154	21	2.5	21	93	3	88	56	13	5	24	1.58
20136139--20136194	27	2.1	27	86	0	76	41	26	17	14	1.88
20136376--20136435	26	2.3	26	91	0	102	20	26	23	30	1.98
20141284--20141509	116	1.9	117	93	2	393	37	14	11	35	1.83
20143443--20143525	40	2.1	40	83	0	103	31	26	21	20	1.98
20154646--20154860	103	2.1	101	83	3	270	27	24	15	32	1.95
20154669--20154833	33	4.9	33	70	7	107	30	23	13	32	1.94
20160989--20161269	137	2.1	137	98	0	546	34	19	13	32	1.90
20162071--20162495	136	3.1	136	100	0	850	27	22	16	33	1.95
20162143--20162495	70	5.2	69	69	13	282	27	22	16	33	1.95
20162071--20162560	272	1.8	271	88	2	750	26	22	16	33	1.96
20162383--20162577	33	5.7	33	66	12	90	28	21	15	34	1.94
20164597--20164623	10	2.7	10	100	0	54	29	22	7	40	1.81
20169788--20169917	68	1.9	69	89	7	203	49	6	4	40	1.48
20169792--20169936	68	2.1	68	82	11	172	50	4	4	40	1.43
20175787--20175824	18	2.2	17	86	9	51	23	5	2	68	1.23
20184880--20185004	55	2.3	55	74	1	124	42	21	12	24	1.86
20187082--20187271	90	2.1	88	83	7	233	34	22	10	33	1.87
20187309--20187356	19	2.5	19	82	3	60	62	0	2	35	1.07
20187318--20187355	20	1.9	19	89	5	58	55	0	2	42	1.14
20187328--20187366	20	2.0	20	84	0	51	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20187520--20187594	20	3.7	21	71	16	68	32	6	4	57	1.43
20187569--20187651	27	3.0	28	72	12	80	31	6	3	59	1.39
20187521--20187602	38	2.2	38	82	10	105	30	6	3	59	1.39
20187618--20187662	19	2.4	18	82	10	54	28	6	6	57	1.50
20187534--20187686	56	2.7	55	78	12	159	30	6	3	59	1.41
20189375--20189419	7	6.4	7	80	10	56	26	4	13	55	1.57
20191814--20191904	25	3.6	25	81	11	82	24	23	23	29	1.99
20197950--20198080	64	2.0	64	95	0	235	41	8	5	44	1.57
20199810--20199843	7	4.9	7	100	0	68	26	14	0	58	1.36
20204422--20204478	25	2.2	25	96	3	105	45	3	21	29	1.68
20205171--20205222	27	1.9	27	84	0	68	28	9	26	34	1.88
20205333--20205399	27	2.5	27	80	0	80	34	11	28	25	1.91
20205788--20206570	390	2.0	390	99	0	1548	34	13	24	28	1.92
20209368--20209395	6	4.7	6	100	0	56	0	14	0	85	0.59
20213748--20213790	18	2.4	18	92	0	68	25	20	25	27	1.99
20215900--20215943	21	2.1	21	100	0	88	31	11	29	27	1.91
20241750--20241779	14	2.1	14	93	0	51	60	0	10	30	1.30
20243983--20244028	22	2.1	22	100	0	92	34	39	8	17	1.80
20249511--20249552	20	2.1	20	86	0	57	30	0	7	61	1.22
20249703--20249741	20	2.0	20	84	0	51	23	7	0	69	1.14
20255427--20255472	24	1.9	24	86	0	65	10	26	15	47	1.78
20257791--20257863	19	3.8	19	85	0	101	38	13	10	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20266185--20266220	3	12.0	3	100	0	72	33	0	0	66	0.92
20267777--20267849	10	7.5	10	71	11	53	26	2	4	67	1.22
20267777--20267849	29	2.5	28	80	12	85	26	2	4	67	1.22
20267777--20267893	9	12.4	9	69	16	60	29	1	3	65	1.18
20268459--20268501	12	3.8	12	81	6	54	41	0	0	58	0.98
20269603--20269634	7	4.6	7	92	0	55	28	3	12	56	1.51
20270284--20270318	18	1.9	18	94	0	61	25	31	8	34	1.86
20270557--20270694	25	5.7	25	79	14	173	41	0	14	43	1.50
20270522--20270684	45	3.5	44	77	14	184	40	0	14	44	1.50
20270522--20270694	95	1.8	94	97	1	328	41	0	14	43	1.50
20270710--20270899	29	7.3	29	72	24	156	45	25	0	28	1.54
20270749--20271062	66	4.5	65	70	26	239	44	27	0	28	1.55
20270710--20271037	123	2.7	122	90	6	517	44	27	0	28	1.55
20270840--20271060	95	2.3	95	93	1	372	43	28	0	28	1.55
20270935--20270997	29	2.2	29	97	0	117	42	31	0	25	1.55
20270716--20271071	21	14.9	23	71	23	179	44	26	0	28	1.57
20271065--20271304	116	2.1	116	97	0	453	37	8	9	44	1.67
20271280--20271321	17	2.4	18	80	4	50	42	7	4	45	1.52
20274512--20274738	125	1.8	125	95	0	409	31	22	16	29	1.96
20275742--20275774	16	2.1	17	88	11	52	27	0	21	51	1.48
20278594--20278672	31	2.6	29	82	11	88	44	8	10	36	1.70
20281110--20282600	748	2.0	744	91	1	2398	34	12	18	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20286001--20286065	25	2.5	26	80	14	71	36	23	23	16	1.94
20287070--20287152	42	2.0	42	97	0	157	40	14	14	30	1.86
20292609--20292657	25	2.0	26	84	11	68	44	8	10	36	1.68
20292986--20293037	26	2.0	26	100	0	104	46	11	19	23	1.82
20295923--20295963	8	5.0	8	94	5	73	39	0	0	60	0.96
20296993--20297091	41	2.4	40	81	3	99	40	1	25	33	1.62
20297202--20297311	38	2.8	40	87	6	131	23	19	24	32	1.97
20297228--20297311	38	2.2	38	97	0	159	22	19	23	34	1.96
20297244--20297377	38	3.5	39	80	9	118	22	22	26	28	1.99
20300495--20300568	37	2.0	37	97	0	139	24	10	14	50	1.75
20306895--20306975	41	2.0	41	90	0	126	30	20	18	29	1.97
20319123--20319159	18	2.0	19	89	5	58	43	13	10	32	1.79
20323423--20323518	48	2.0	48	93	0	165	31	21	9	37	1.85
20328969--20328994	7	3.7	7	100	0	52	42	15	15	26	1.87
20328993--20329019	7	3.9	7	100	0	54	44	29	0	25	1.54
20329486--20329535	20	2.6	20	81	6	59	56	0	2	42	1.11
20329875--20329945	22	3.2	22	63	21	58	38	7	12	42	1.70
20329870--20329963	44	2.1	44	96	0	170	43	7	12	36	1.71
20334726--20334792	25	2.6	25	88	4	98	38	11	0	49	1.40
20334914--20334977	4	16.0	4	81	12	69	68	0	31	0	0.90
20334904--20334988	18	4.4	18	70	15	64	63	0	36	0	0.95
20334905--20335017	36	3.2	34	78	13	104	64	0	35	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20334944--20335024	18	4.3	18	71	25	53	65	0	34	0	0.93
20335011--20335035	9	2.8	9	100	0	50	76	0	24	0	0.80
20335063--20335149	24	3.4	25	71	22	83	28	5	11	54	1.59
20338227--20338253	11	2.5	11	100	0	54	37	7	14	40	1.74
20340507--20340551	18	2.5	18	85	0	63	17	46	6	28	1.73
20341391--20341425	3	11.7	3	93	0	61	68	28	0	2	1.04
20341390--20341428	12	3.2	12	92	0	69	66	25	0	7	1.18
20341551--20341590	11	3.7	11	86	6	64	0	25	0	75	0.81
20343874--20343912	8	5.1	8	81	12	55	10	0	25	64	1.25
20344859--20344914	12	4.8	12	75	18	55	41	8	1	48	1.45
20347889--20348096	91	2.3	91	90	0	317	46	3	4	45	1.41
20348011--20348071	28	2.2	28	85	5	81	45	0	3	50	1.17
20348101--20348311	54	3.6	58	69	19	143	42	2	3	51	1.31
20348112--20348409	120	2.5	120	90	2	474	43	2	4	50	1.33
20348237--20348288	15	3.6	15	80	12	56	44	0	1	53	1.11
20348185--20348372	61	3.1	59	69	17	170	43	2	5	48	1.39
20348621--20348674	16	3.4	16	86	0	81	29	33	1	35	1.69
20363305--20363550	35	7.0	35	80	3	262	27	4	33	34	1.77
20363305--20363550	105	2.3	105	84	1	314	27	4	33	34	1.77
20371776--20371816	18	2.2	18	86	4	55	31	4	2	60	1.30
20379543--20379590	25	1.9	25	82	0	60	45	0	0	54	0.99
20395842--20395924	35	2.4	35	93	0	139	36	18	2	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20396056--20396124	29	2.4	27	74	9	66	65	2	2	28	1.22
20396132--20396165	14	2.3	15	90	5	52	73	2	0	23	0.97
20396131--20396168	15	2.5	15	83	8	51	73	2	0	23	0.95
20399364--20399404	22	1.9	21	90	5	64	82	2	14	0	0.76
20400292--20400326	16	2.2	16	94	0	61	25	25	5	42	1.77
20403512--20403551	21	1.9	21	85	10	55	55	20	5	20	1.62
20407823--20407862	21	1.9	21	85	10	55	55	20	5	20	1.62
20413345--20413482	60	2.3	61	82	6	156	43	10	5	39	1.64
20422848--20422913	33	2.0	33	84	0	87	50	18	12	19	1.78
20423083--20423111	3	9.7	3	100	0	58	31	0	0	68	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182