genome.fa.s21.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  164  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50363284--50363414	63	2.1	61	85	2	172	44	15	22	18	1.86
50365064--50365104	18	2.2	19	91	4	66	17	19	17	46	1.85
50369651--50369725	34	2.3	31	84	9	96	33	21	21	24	1.97
50371941--50372162	9	25.6	9	65	21	64	32	1	16	49	1.55
50371951--50372164	36	6.0	36	81	10	255	33	1	16	49	1.55
50371941--50372147	34	6.3	29	76	19	128	33	0	15	49	1.52
50372042--50372090	14	3.3	14	81	15	62	32	0	16	51	1.45
50371951--50372151	67	3.0	67	92	3	323	33	0	15	49	1.52
50371941--50372112	34	5.5	30	81	14	138	33	1	16	49	1.53
50372082--50372162	41	2.0	41	85	4	110	33	1	17	48	1.55
50372098--50372278	98	1.9	97	89	4	287	30	3	14	50	1.61
50372193--50372260	9	7.6	9	77	6	75	35	0	17	47	1.48
50373089--50373134	13	3.5	13	75	0	56	10	15	4	69	1.32
50373087--50373137	26	2.0	26	100	0	102	13	15	3	66	1.39
50373187--50373560	72	5.2	71	76	3	293	45	12	6	35	1.68
50374958--50375170	76	2.8	77	92	0	356	22	20	26	30	1.98
50377277--50377317	13	3.2	13	86	10	57	0	26	0	73	0.84
50379517--50379627	41	2.8	39	76	8	125	27	18	16	37	1.92
50380571--50380648	39	2.0	39	87	5	113	15	20	41	23	1.90
50388021--50388156	71	1.9	71	93	3	238	36	13	2	47	1.58
50388294--50388382	26	3.4	25	73	18	74	50	1	2	46	1.21
50389424--50389452	14	2.1	14	93	6	51	58	0	13	27	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50396282--50396316	16	2.2	16	89	0	52	82	0	8	8	0.83
50397106--50397594	40	11.8	40	78	11	511	22	21	23	32	1.98
50397080--50397598	84	6.2	84	93	2	800	22	20	24	32	1.97
50397080--50397598	170	3.1	167	90	4	798	22	20	24	32	1.97
50397107--50397605	82	6.0	83	91	3	754	22	21	23	32	1.98
50414157--50414236	33	2.4	34	74	19	87	53	5	3	37	1.41
50420954--50421028	28	2.6	28	82	12	91	34	4	1	60	1.24
50420974--50421072	29	3.4	30	77	16	82	33	3	1	62	1.17
50420954--50421101	9	15.6	9	68	16	68	31	3	0	64	1.14
50420946--50421061	19	6.1	19	68	18	64	31	3	0	63	1.17
50421016--50421095	29	2.7	29	78	18	85	31	2	0	66	1.05
50421016--50421094	30	2.7	30	79	11	83	31	1	0	67	0.99
50425871--50426048	71	2.5	71	73	5	171	25	23	22	29	1.99
50428460--50428638	58	3.1	57	87	4	234	27	18	6	47	1.72
50430547--50430593	24	2.0	24	83	8	60	48	0	34	17	1.47
50436129--50436161	14	2.4	14	100	0	66	24	15	12	48	1.78
50436873--50436910	18	2.1	19	85	5	51	34	2	5	57	1.35
50438788--50438832	16	2.7	17	86	6	65	42	0	0	57	0.98
50438816--50438882	11	6.4	11	75	18	54	35	2	0	61	1.12
50438799--50438885	40	2.2	40	93	0	156	36	2	0	60	1.09
50438825--50438896	29	2.4	31	84	11	96	37	2	0	59	1.12
50438865--50438903	20	2.0	20	89	0	60	38	2	0	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50444877--50444921	21	2.1	20	84	12	54	60	11	6	22	1.54
50451376--50451419	22	2.0	22	100	0	88	31	22	13	31	1.93
50452739--50452800	27	2.4	27	81	10	76	35	14	0	50	1.43
50452739--50452810	27	2.7	26	77	8	74	33	16	0	50	1.46
50456412--50456463	24	2.2	24	89	0	77	55	9	1	32	1.43
50458382--50458433	24	2.2	24	89	0	77	55	9	1	32	1.43
50458835--50458889	16	3.5	16	77	18	53	65	1	12	20	1.35
50459053--50459254	65	3.2	65	80	11	258	63	2	6	26	1.33
50459111--50459231	57	2.1	57	93	1	206	63	2	5	28	1.30
50460720--50461242	44	11.8	44	83	2	541	30	20	16	32	1.95
50464105--50464379	41	6.7	41	95	0	478	26	21	29	22	1.99
50467444--50467491	25	2.0	25	87	4	71	14	27	20	37	1.92
50467565--50467647	27	3.3	25	77	11	89	20	26	20	32	1.97
50467631--50467695	24	2.7	24	85	0	94	16	29	18	35	1.93
50467564--50467706	24	5.8	24	69	16	71	18	25	19	35	1.95
50467579--50467712	48	2.7	49	75	6	128	18	26	18	36	1.94
50469935--50469977	21	2.0	21	100	0	86	9	18	27	44	1.80
50474271--50474455	101	1.8	102	88	3	284	24	18	25	31	1.98
50474268--50474453	51	3.7	50	76	4	194	24	18	26	31	1.97
50474464--50474552	45	2.0	45	93	0	151	24	14	24	35	1.93
50477994--50478033	20	2.0	20	86	13	57	55	17	0	27	1.43
50481469--50481513	16	2.8	15	83	12	54	62	2	13	22	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50481702--50481803	33	3.2	30	68	12	87	62	1	5	29	1.29
50481681--50481876	65	3.0	65	86	10	272	63	2	5	29	1.27
50481843--50481885	19	2.2	20	84	15	56	74	0	6	18	1.04
50488838--50488947	41	2.7	42	92	2	188	30	20	25	23	1.99
50488924--50488973	26	1.9	26	92	8	84	22	22	28	28	1.99
50488950--50489100	42	3.6	43	75	7	121	23	16	24	35	1.95
50488978--50489099	43	2.9	45	76	10	123	22	15	24	36	1.93
50491590--50491735	43	3.5	42	82	8	172	34	26	17	21	1.95
50491586--50491735	42	3.6	43	82	7	182	34	26	18	21	1.96
50491715--50491764	26	1.9	26	91	0	82	28	28	20	24	1.99
50491738--50491929	41	4.7	41	94	0	330	23	23	19	33	1.97
50497887--50497926	14	2.9	14	80	0	53	45	7	17	30	1.76
50498498--50498533	18	1.9	18	88	5	54	58	2	0	38	1.13
50500152--50500179	2	14.0	2	100	0	56	0	50	0	50	1.00
50505061--50505094	18	1.9	18	88	5	52	55	5	8	29	1.54
50507921--50507953	17	2.0	17	94	5	59	21	6	12	60	1.53
50510139--50510224	42	2.0	42	84	4	109	44	12	5	37	1.67
50510665--50510745	30	2.7	29	76	16	85	45	4	7	41	1.53
50511074--50511107	16	2.1	16	88	0	50	47	2	2	47	1.32
50525392--50526058	50	13.4	48	78	10	598	32	22	20	24	1.98
50525381--50526020	100	6.4	100	88	3	898	31	22	20	25	1.98
50525393--50526058	150	4.5	150	82	4	873	32	22	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50525393--50526035	348	1.8	348	87	4	958	31	22	20	25	1.98
50531391--50531417	12	2.2	12	100	0	54	18	0	0	81	0.69
50543192--50543227	18	2.0	18	94	0	63	44	16	19	19	1.87
50553158--50553208	24	2.1	24	82	7	59	31	13	15	39	1.87
50556586--50556636	24	2.1	24	82	7	59	31	13	15	39	1.87
50559717--50559759	21	2.0	22	86	9	61	39	9	6	44	1.64
50559843--50559884	22	2.0	22	86	13	61	33	7	4	54	1.49
50560448--50560500	5	10.4	5	91	4	79	0	22	0	77	0.77
50561401--50561442	16	2.7	15	82	7	57	54	14	0	30	1.40
50561724--50561753	16	1.9	16	93	6	53	46	0	0	53	1.00
50570730--50570776	21	2.2	22	92	3	78	21	38	19	21	1.94
50574977--50575010	16	2.1	16	94	0	59	26	2	17	52	1.58
50577875--50578393	284	1.8	284	88	2	792	47	16	14	21	1.82
50582295--50582344	20	2.5	19	80	6	55	54	6	6	34	1.50
50583844--50583871	3	9.3	3	100	0	56	32	0	0	67	0.91
50587458--50587505	20	2.4	20	100	0	96	45	16	18	18	1.85
50587813--50587882	35	2.0	35	100	0	140	37	14	17	31	1.89
50589447--50589478	16	2.0	16	100	0	64	37	6	37	18	1.76
50589458--50589569	45	2.5	45	95	2	199	37	6	26	29	1.81
50589532--50589925	196	2.0	196	98	0	761	37	4	20	37	1.73
50590044--50590095	16	3.0	18	78	21	58	53	0	0	44	1.00
50590080--50590267	57	3.1	66	67	21	208	48	4	2	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50590150--50590305	26	5.5	26	65	19	71	50	3	1	44	1.28
50590178--50590212	18	2.0	17	88	5	52	54	0	0	45	0.99
50589923--50590330	117	3.5	117	88	8	593	50	3	1	43	1.29
50590293--50590329	16	2.2	17	86	13	51	54	0	2	43	1.14
50597527--50597592	26	2.5	27	90	9	109	45	7	0	46	1.31
50597641--50597716	27	2.8	27	88	4	109	25	27	28	18	1.98
50597850--50597888	19	2.0	21	85	10	55	23	0	10	66	1.22
50598146--50598318	34	5.4	34	69	19	140	34	0	12	53	1.39
50598134--50598318	62	3.0	62	90	3	275	33	0	13	52	1.40
50598208--50598318	26	3.4	36	68	25	102	36	0	11	52	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182