genome.fa.s21.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  169  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51709685--51709709	8	3.1	8	100	0	50	36	12	0	52	1.39
51709867--51709919	12	4.8	11	73	17	56	35	1	1	60	1.19
51710799--51710850	16	3.2	16	76	10	52	28	0	17	53	1.44
51711205--51711268	29	2.2	30	80	8	69	48	6	3	42	1.44
51716318--51716361	24	1.9	24	86	9	65	31	6	18	43	1.76
51723629--51723690	32	1.9	33	87	9	92	64	4	9	20	1.42
51723805--51723847	21	2.1	20	83	12	52	76	2	9	11	1.10
51723737--51723858	63	2.0	62	95	4	219	66	8	12	13	1.44
51724387--51724461	38	2.0	38	84	5	98	38	13	16	32	1.87
51733114--51733165	27	1.9	27	88	0	77	65	1	3	28	1.21
51737911--51737975	30	2.2	30	78	13	73	32	9	3	55	1.47
51739981--51740049	18	3.8	18	80	0	84	11	44	4	39	1.61
51742179--51742206	13	2.2	13	100	0	56	53	14	0	32	1.41
51742611--51742650	14	2.9	14	85	10	55	47	15	2	35	1.58
51745584--51745632	25	2.0	25	87	0	71	53	10	6	30	1.59
51745589--51745641	25	2.2	24	83	6	63	52	9	7	30	1.61
51746351--51746390	20	2.0	20	85	9	55	12	40	37	10	1.77
51747230--51747335	50	2.1	50	82	6	126	25	20	22	31	1.98
51747540--51747908	132	2.8	132	88	2	544	25	25	19	30	1.98
51750414--51750519	55	1.9	55	94	0	185	18	19	18	42	1.90
51763927--51763977	18	2.8	19	71	14	54	39	13	1	45	1.55
51763911--51763977	35	1.9	35	93	0	116	38	13	1	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51769621--51769647	14	1.9	14	100	0	54	22	18	7	51	1.70
51771619--51771657	13	2.7	15	80	11	55	56	5	33	5	1.43
51773033--51773088	28	2.0	28	89	0	85	57	7	32	3	1.43
51773978--51774056	28	2.8	28	88	11	126	60	8	30	0	1.27
51773978--51774050	9	8.0	9	71	18	53	58	9	31	0	1.30
51777974--51778002	3	9.7	3	100	0	58	34	31	0	34	1.58
51778352--51778573	117	1.9	117	85	6	306	43	2	9	44	1.52
51779334--51779359	3	8.7	3	100	0	52	34	30	0	34	1.58
51779985--51780016	3	10.7	3	100	0	64	68	0	0	31	0.90
51780037--51781002	117	8.3	117	99	0	1923	29	6	13	49	1.68
51788255--51788300	23	2.0	23	91	0	74	28	6	23	41	1.79
51800820--51800867	23	2.1	23	84	0	60	10	16	2	70	1.24
51801785--51801817	14	2.3	15	89	5	50	78	0	21	0	0.75
51802114--51802190	29	2.5	31	83	4	95	48	15	9	27	1.75
51802147--51802210	29	2.1	29	82	5	74	53	15	9	21	1.70
51804114--51804238	3	41.7	3	98	0	241	0	33	0	65	0.98
51804581--51804634	21	2.7	19	75	16	56	35	11	1	51	1.48
51805323--51805889	126	4.5	125	82	3	692	30	16	22	30	1.96
51805323--51805889	251	2.3	250	85	2	735	30	16	22	30	1.96
51809064--51810267	22	56.7	21	74	12	784	25	0	29	45	1.58
51809067--51810244	43	27.6	43	73	12	747	25	0	29	44	1.58
51809580--51809728	80	1.9	80	84	2	201	25	0	26	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51809179--51809853	128	5.3	124	80	9	467	25	1	28	44	1.61
51809688--51810185	81	6.0	79	73	15	339	26	0	27	45	1.54
51809728--51809861	36	3.5	36	72	19	101	27	0	28	44	1.55
51809574--51809975	212	1.9	202	86	6	565	26	0	27	45	1.54
51810075--51810146	36	2.0	36	86	5	101	25	0	30	44	1.54
51810061--51810143	29	2.8	29	73	14	80	24	0	30	45	1.53
51810226--51810259	15	2.3	15	89	0	50	23	0	38	38	1.55
51810222--51810295	14	5.3	14	73	15	64	20	0	36	43	1.52
51810123--51810267	43	3.6	39	82	13	127	23	0	29	46	1.52
51810236--51810288	27	1.9	27	84	3	70	20	0	37	41	1.53
51812463--51812560	51	1.9	51	87	4	144	45	3	24	26	1.67
51812522--51812598	11	6.9	11	70	24	63	44	1	28	25	1.62
51812522--51812598	22	3.5	22	77	13	77	44	1	28	25	1.62
51812522--51812598	33	2.3	33	78	10	93	44	1	28	25	1.62
51814004--51814056	24	2.2	24	89	3	79	52	1	0	45	1.11
51815720--51815799	39	2.2	35	82	10	90	6	31	2	60	1.35
51817971--51818083	44	2.6	44	80	14	126	23	17	29	29	1.97
51818715--51818768	19	2.8	19	94	0	99	37	9	16	37	1.81
51818704--51818775	38	2.0	36	84	10	94	37	9	16	36	1.82
51818715--51818791	38	1.9	40	87	10	113	36	7	16	38	1.78
51818971--51819015	23	2.0	23	81	0	54	22	0	15	62	1.33
51820673--51820996	23	13.8	23	79	4	342	26	14	19	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51820673--51820995	47	6.9	46	82	3	358	26	14	19	39	1.90
51820675--51820940	70	3.8	71	86	2	340	26	15	18	39	1.90
51820673--51820995	119	2.7	119	88	1	481	26	14	19	39	1.90
51821719--51821923	82	2.5	84	83	4	236	32	22	20	25	1.98
51821719--51821938	42	5.2	42	84	6	248	33	22	19	25	1.97
51821992--51822025	14	2.4	14	95	0	59	52	20	8	17	1.71
51822249--51822319	21	3.4	21	80	0	79	2	45	18	33	1.64
51827770--51827908	18	8.0	18	67	30	65	34	0	20	44	1.52
51827770--51827908	7	16.0	9	65	32	65	34	0	20	44	1.52
51827815--51828143	26	13.1	26	87	7	441	32	0	20	46	1.55
51827899--51828139	19	13.2	19	65	27	80	32	0	20	46	1.57
51827815--51828143	147	2.2	150	89	5	515	32	0	20	46	1.55
51828003--51828124	18	6.4	18	67	26	74	35	1	18	44	1.60
51827815--51828143	52	6.5	51	87	7	487	32	0	20	46	1.55
51828179--51828403	73	3.1	73	98	1	423	41	6	1	50	1.37
51828265--51828386	41	3.2	41	64	21	118	41	5	1	50	1.36
51828180--51828400	74	3.0	74	98	0	426	41	6	1	50	1.37
51828550--51828620	13	5.5	13	86	0	106	50	2	7	39	1.44
51828549--51828620	26	2.8	26	100	0	144	50	2	6	40	1.44
51828625--51828923	17	16.6	17	70	23	161	42	1	11	43	1.51
51828592--51828932	57	6.5	57	75	20	375	44	2	10	42	1.51
51828642--51828752	44	2.7	40	86	10	177	44	1	10	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51828609--51828911	101	3.0	100	94	4	533	44	1	10	42	1.50
51828743--51828849	40	2.7	40	94	2	189	43	1	11	42	1.51
51828592--51828900	97	3.1	97	93	4	521	44	2	10	42	1.51
51830266--51830305	11	3.7	11	93	3	64	27	27	10	35	1.89
51831553--51831830	84	3.3	84	88	4	448	28	20	19	31	1.97
51833433--51833957	111	4.7	111	94	1	901	25	26	17	30	1.97
51833904--51834037	40	3.3	40	87	1	169	23	30	15	29	1.96
51835347--51835403	20	2.8	20	81	0	78	43	10	10	35	1.74
51844708--51844958	27	9.3	26	79	8	236	46	17	17	17	1.84
51844708--51844959	54	4.7	53	84	7	287	46	17	17	18	1.85
51844708--51844960	81	3.1	81	83	1	321	46	17	17	18	1.85
51845120--51845194	26	2.8	26	77	2	78	21	21	16	41	1.90
51845309--51845374	33	2.0	33	85	5	89	22	24	22	30	1.99
51845731--51845767	14	2.4	16	78	21	51	62	8	0	29	1.24
51845734--51845773	15	2.7	15	88	7	55	60	5	0	35	1.19
51848153--51848193	12	3.5	12	80	12	50	60	0	2	36	1.10
51854605--51854644	18	2.2	18	86	8	55	67	12	0	20	1.22
51855353--51855478	43	3.0	43	83	6	134	28	28	15	26	1.96
51855385--51855610	43	5.3	43	83	5	162	28	26	15	28	1.96
51855410--51855610	85	2.4	84	79	7	219	27	26	15	29	1.96
51855867--51855957	43	2.1	43	85	2	121	45	9	10	34	1.73
51859975--51860080	7	14.9	7	72	11	54	37	39	0	21	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51860026--51860074	14	3.4	14	81	13	64	34	46	2	16	1.58
51860102--51860144	22	2.0	22	90	0	68	46	32	0	20	1.51
51860849--51861212	41	8.9	39	76	7	296	31	29	17	21	1.97
51860849--51861207	124	2.9	121	80	5	382	31	28	17	22	1.97
51860849--51861207	82	4.4	80	78	6	344	31	28	17	22	1.97
51861255--51861371	40	2.9	41	82	6	123	24	20	18	35	1.95
51866610--51866675	21	3.3	20	69	26	59	34	1	3	60	1.21
51870334--51870625	126	2.3	126	89	1	451	26	20	19	33	1.96
51870823--51870890	14	4.7	15	74	16	56	48	32	0	19	1.49
51883604--51883661	29	2.1	26	81	15	64	34	3	3	58	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182